CU118836 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU118836
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Alpha-xylosidase 1
Location	Chr6 : 2756753 .. 2757013 (+)
Sequence length	259

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

AAAAGGCAAACAATGCCCAACTGGAACAGGACCTGGCTGGATTTGTTGTCTAGACTGCAAGAACATTACGAAAACAAGATGGGATGATCCACCTTACAAGATAAATGCATCAGGTTTGCAGGTGCCAATTGGCTTCAAAACAATTGCGACCAGTGCAGTTCACTACAATGGTGTTCTTGAGTATGATGCTCACAGTCTCTATGGGTTCTCTCAGTCTGTTGCAACTCATAAGGCCCTTCTCGGTCTTGAGGGAAGAGGC

Library


Library category	ESTs
fruit (8DPP) library	2
gynoecious flower library	1

Homology

[Close]

BLAST of CU118836 vs. Swiss-Prot
Match: XYL1_ARATH (Alpha-xylosidase 1 OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-38
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           +GKQCP+G GPGW+CCLDCKNITKTRWDDPPYKINA+G+  P+GFKTIATSA HYNGV E
Sbjct: 456 EGKQCPSGEGPGWVCCLDCKNITKTRWDDPPYKINATGVVAPVGFKTIATSATHYNGVRE 515

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHS+YGFS+++ATHK LL ++G+
Sbjct: 516 YDAHSIYGFSETIATHKGLLNVQGK 540

Query: 122  181
           
Sbjct: 576  540

Query: 182  241
           
Sbjct: 636  540

Query: 242  257
           
Sbjct: 696  540

[Close]

BLAST of CU118836 vs. Swiss-Prot
Match: XYL2_ARATH (Putative alpha-xylosidase 2 OS=Arabidopsis thaliana GN=XYL2 PE=5 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-14
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 2


Query: 98  KINASGLQVPIGFKTIATSAVHYNGVLEYDAHSLYGFSQSVATHKALLGLEGR 157
           +INA+G +  +GFKTI TSA HYNGV EYDAHS+YGFS+++ATHKALL ++G+
Sbjct: 440 EINATGHKASLGFKTIPTSAYHYNGVREYDAHSIYGFSEAIATHKALLAVQGK 492

Query: 158  217
           
Sbjct: 500  492

Query: 218  257
           
Sbjct: 560  492

[Close]

BLAST of CU118836 vs. Swiss-Prot
Match: AGLU_ORYSJ (Probable alpha-glucosidase Os06g0675700 OS=Oryza sativa subsp. japonica GN=Os06g0675700 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-13
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 2


Query: 83  DDPPYKINASGLQVPIGFKTIATSAVHYNGVLEYDAHSLYGFSQSVATHKALLGLEGR 142
           DDPPY+IN SG++ PI  KT+  SAVHY GV EYDAH+L+GF ++ ATH ALL   GR
Sbjct: 460 DDPPYRINNSGVRRPINNKTVPASAVHYGGVAEYDAHNLFGFLEARATHDALLRDTGR 517

Query: 143  202
           
Sbjct: 520  517

Query: 203  257
           
Sbjct: 580  517

[Close]

BLAST of CU118836 vs. Swiss-Prot
Match: AGLU_BETVU (Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-11
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 2


Query: 83  DDPPYKINASGLQVPIGFKTIATSAVHYNGVLEYDAHSLYGFSQSVATHKALLGLEGRG 142
           D+PPYKIN SG +VPI  KTI  +A+HY  V EY+AH+LYGF +S AT +AL+    RG
Sbjct: 488 DNPPYKINNSGGRVPINSKTIPATAMHYGNVTEYNAHNLYGFLESQATREALVRPATRG 546

Query: 143  202
           
Sbjct: 548  546

Query: 203  260
           
Sbjct: 608  546

[Close]

BLAST of CU118836 vs. Swiss-Prot
Match: AGLU_SPIOL (Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-08
Identity = 26/55 (47.27%), Postives = 37/55 (67.27%), Query Frame = 2


Query: 83  DDPPYKINASGLQVPIGFKTIATSAVHYNGVLEYDAHSLYGFSQSVATHKALLGL 142
           D+PPYKIN SG+ +PI  KTI  +A+HY  + EY+ H+L+G+ ++  T  AL+ L
Sbjct: 484 DNPPYKINNSGVMLPIINKTIPPTAMHYGDIPEYNVHNLFGYLEARVTRAALIKL 538

Query: 143  202
           
Sbjct: 544  538

Query: 203  248
           
Sbjct: 604  538

[Close]

BLAST of CU118836 vs. TrEMBL
Match: A0A0A0K959_CUCSA (Alpha-glucosidase OS=Cucumis sativus GN=Csa_6G039020 PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.2e-44
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE
Sbjct: 469 KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 528

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHSLYGFSQSVATHKALLGLEG+
Sbjct: 529 YDAHSLYGFSQSVATHKALLGLEGK 553

Query: 122  181
           
Sbjct: 589  553

Query: 182  241
           
Sbjct: 649  553

Query: 242  257
           
Sbjct: 709  553

[Close]

BLAST of CU118836 vs. TrEMBL
Match: V4SSU2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033422mg PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-43
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCPTGTGPGW+CCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSA HYNGVLE
Sbjct: 491 KGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAYHYNGVLE 550

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHS+YGFSQS+ATHKALLGLEG+
Sbjct: 551 YDAHSIYGFSQSIATHKALLGLEGK 575

Query: 122  181
           
Sbjct: 611  575

Query: 182  241
           
Sbjct: 671  575

Query: 242  257
           
Sbjct: 731  575

[Close]

BLAST of CU118836 vs. TrEMBL
Match: A0A067FRH3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0022562mg PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-43
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCPTGTGPGW+CCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSA HYNGVLE
Sbjct: 162 KGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAYHYNGVLE 221

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHS+YGFSQS+ATHKALLGLEG+
Sbjct: 222 YDAHSIYGFSQSIATHKALLGLEGK 246

Query: 122  181
           
Sbjct: 282  246

Query: 182  241
           
Sbjct: 342  246

Query: 242  257
           
Sbjct: 402  246

[Close]

BLAST of CU118836 vs. TrEMBL
Match: A0A0D2PK82_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G368700 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-42
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCP+GTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE
Sbjct: 466 KGKQCPSGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 525

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHSLYGFSQ++ATHKAL GLEG+
Sbjct: 526 YDAHSLYGFSQAIATHKALQGLEGK 550

Query: 122  181
           
Sbjct: 586  550

Query: 182  241
           
Sbjct: 646  550

Query: 242  257
           
Sbjct: 706  550

[Close]

BLAST of CU118836 vs. TrEMBL
Match: A0A0D2T2M4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G183500 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.3e-42
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCP+GTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE
Sbjct: 466 KGKQCPSGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 525

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHSLYGFSQ++ATHKAL GLEG+
Sbjct: 526 YDAHSLYGFSQAIATHKALQGLEGK 550

Query: 122  181
           
Sbjct: 586  550

Query: 182  241
           
Sbjct: 646  550

Query: 242  257
           
Sbjct: 706  550

[Close]

BLAST of CU118836 vs. NCBI nr
Match: gi|449446197|ref|XP_004140858.1| (PREDICTED: alpha-xylosidase 1 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 7.1e-45
Identity = 84/85 (98.82%), Postives = 85/85 (100.00%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE
Sbjct: 469 KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 528

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHSLYGFSQSVATHKALLGLEG+
Sbjct: 529 YDAHSLYGFSQSVATHKALLGLEGK 553

Query: 122  181
           
Sbjct: 589  553

Query: 182  241
           
Sbjct: 649  553

Query: 242  257
           
Sbjct: 709  553

[Close]

BLAST of CU118836 vs. NCBI nr
Match: gi|659089719|ref|XP_008445661.1| (PREDICTED: alpha-xylosidase 1 [Cucumis melo])

HSP 1 Score: 184.9 bits (468), Expect = 6.0e-44
Identity = 82/85 (96.47%), Postives = 85/85 (100.00%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           +GKQCPTGTGPGWICCLDCKNIT+TRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE
Sbjct: 471 EGKQCPTGTGPGWICCLDCKNITETRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 530

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHSLYGFSQSVATHKALLGLEG+
Sbjct: 531 YDAHSLYGFSQSVATHKALLGLEGK 555

Query: 122  181
           
Sbjct: 591  555

Query: 182  241
           
Sbjct: 651  555

Query: 242  257
           
Sbjct: 711  555

[Close]

BLAST of CU118836 vs. NCBI nr
Match: gi|641851087|gb|KDO69958.1| (hypothetical protein CISIN_1g0022562mg, partial [Citrus sinensis])

HSP 1 Score: 184.5 bits (467), Expect = 7.8e-44
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCPTGTGPGW+CCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSA HYNGVLE
Sbjct: 162 KGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAYHYNGVLE 221

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHS+YGFSQS+ATHKALLGLEG+
Sbjct: 222 YDAHSIYGFSQSIATHKALLGLEGK 246

Query: 122  181
           
Sbjct: 282  246

Query: 182  241
           
Sbjct: 342  246

Query: 242  257
           
Sbjct: 402  246

[Close]

BLAST of CU118836 vs. NCBI nr
Match: gi|568861951|ref|XP_006484460.1| (PREDICTED: alpha-xylosidase 1 [Citrus sinensis])

HSP 1 Score: 184.5 bits (467), Expect = 7.8e-44
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCPTGTGPGW+CCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSA HYNGVLE
Sbjct: 462 KGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAYHYNGVLE 521

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHS+YGFSQS+ATHKALLGLEG+
Sbjct: 522 YDAHSIYGFSQSIATHKALLGLEGK 546

Query: 122  181
           
Sbjct: 582  546

Query: 182  241
           
Sbjct: 642  546

Query: 242  257
           
Sbjct: 702  546

[Close]

BLAST of CU118836 vs. NCBI nr
Match: gi|567890295|ref|XP_006437668.1| (hypothetical protein CICLE_v10033422mg [Citrus clementina])

HSP 1 Score: 184.5 bits (467), Expect = 7.8e-44
Identity = 80/85 (94.12%), Postives = 84/85 (98.82%), Query Frame = 2


Query: 2   KGKQCPTGTGPGWICCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAVHYNGVLE 61
           KGKQCPTGTGPGW+CCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSA HYNGVLE
Sbjct: 491 KGKQCPTGTGPGWVCCLDCKNITKTRWDDPPYKINASGLQVPIGFKTIATSAYHYNGVLE 550

Query: 62  YDAHSLYGFSQSVATHKALLGLEGR 121
           YDAHS+YGFSQS+ATHKALLGLEG+
Sbjct: 551 YDAHSIYGFSQSIATHKALLGLEGK 575

Query: 122  181
           
Sbjct: 611  575

Query: 182  241
           
Sbjct: 671  575

Query: 242  257
           
Sbjct: 731  575

The following BLAST results are available for this feature:

BLAST of CU118836 vs. Swiss-Prot


Match Name	E-value	Identity	Description
XYL1_ARATH	2.2e-38	76.47	Alpha-xylosidase 1 OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1	[more]
XYL2_ARATH	1.0e-14	66.04	Putative alpha-xylosidase 2 OS=Arabidopsis thaliana GN=XYL2 PE=5 SV=1	[more]
AGLU_ORYSJ	1.1e-13	62.07	Probable alpha-glucosidase Os06g0675700 OS=Oryza sativa subsp. japonica GN=Os06g...	[more]
AGLU_BETVU	1.0e-11	57.63	Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1	[more]
AGLU_SPIOL	3.1e-08	47.27	Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1	[more]

BLAST of CU118836 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K959_CUCSA	3.2e-44	98.82	Alpha-glucosidase OS=Cucumis sativus GN=Csa_6G039020 PE=3 SV=1	[more]
V4SSU2_9ROSI	3.5e-43	94.12	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033422mg PE=3 SV=1	[more]
A0A067FRH3_CITSI	3.5e-43	94.12	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0022562mg PE=3 ...	[more]
A0A0D2PK82_GOSRA	1.3e-42	94.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G368700 PE=3 SV=1	[more]
A0A0D2T2M4_GOSRA	1.3e-42	94.12	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G183500 PE=3 SV=1	[more]

BLAST of CU118836 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449446197\|ref\|XP_004140858.1\|	7.1e-45	98.82	PREDICTED: alpha-xylosidase 1 [Cucumis sativus]	[more]
gi\|659089719\|ref\|XP_008445661.1\|	6.0e-44	96.47	PREDICTED: alpha-xylosidase 1 [Cucumis melo]	[more]
gi\|641851087\|gb\|KDO69958.1\|	7.8e-44	94.12	hypothetical protein CISIN_1g0022562mg, partial [Citrus sinensis]	[more]
gi\|568861951\|ref\|XP_006484460.1\|	7.8e-44	94.12	PREDICTED: alpha-xylosidase 1 [Citrus sinensis]	[more]
gi\|567890295\|ref\|XP_006437668.1\|	7.8e-44	94.12	hypothetical protein CICLE_v10033422mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G039020	Csa6G039020	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
FKNP3UI02LS6Z7	FKNP3UI02LS6Z7	EST
FKNP3UI02MOM6B	FKNP3UI02MOM6B	EST
G0208780	G0208780	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22762	ALPHA-GLUCOSIDASE	coord: 26..85 score: 3.3
None	No IPR available	PANTHER	PTHR22762:SF56	ALPHA-XYLOSIDASE 1-RELATED	coord: 26..85 score: 3.3