CU097935 (transcribed_cluster) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CU097935
Type	transcribed_cluster
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Leucine-rich receptor-like protein kinase family protein
Location	Chr6 : 6202987 .. 6203346 (+)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

ACATTTACAGCTTTGGGGTTATATTAAGAGTTCTGTTAACCGGTAGAGATCCGATAGAGACCGAACAGGTGTCGTCAGATAGAGGAGATAGCAGTGGCAGTGGGGGGAAGTTTAGGGAGGTGGGTTGAGCAATCAGTGGAGCCACGAGAAGCTCTTGATAAAACCATTATAGGAGAAGGAATGGAAGAAGAAGAAGAAGAGATGGTGTTGGCATTGAGAATTGCTGGTGTGTGCACATCAGAATTGGCTGAAGACAGGCCTTGTAGCGATGAATTACTTGTGATGTTGACCCAATTACAGAGCTTTTAAAGCAGTTGTAAGCTTATTTTCCGGCCACCATTGATTGCAGATAAAGTTGATAAG

Library


Library category	ESTs
gynoecious flower library	13
hermaphrodite flower library	3

Homology

[Close]

BLAST of CU097935 vs. Swiss-Prot
Match: CRN_ARATH (Inactive leucine-rich repeat receptor-like protein kinase CORYNE OS=Arabidopsis thaliana GN=CRN PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 1


Query: 97  AVGGSLGRWV---EQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCS 156
           A GGSLG+W+   +QS E REALDKTI+           ++ALRI  +C S+   DRP S
Sbjct: 331 ASGGSLGQWLKHLQQSGEAREALDKTILGEEVEEDEM--LMALRITIICLSDFPADRPSS 390

Query: 157 DELLVMLTQLQSF 216
           DEL+ MLTQL SF
Sbjct: 391 DELVHMLTQLHSF 401

Query: 217  276
           
Sbjct: 451  401

Query: 277  307
           
Sbjct: 511  401

HSP 2 Score: 32.0 bits (71), Expect = 5.7e+00
Identity = 14/17 (82.35%), Postives = 14/17 (82.35%), Query Frame = 3


Query: 3   IYSFGVILRVLLTGRDP 54
           I+SFG+IL VLLTGRDP
Sbjct: 306 IFSFGMILGVLLTGRDP 322

[Close]

BLAST of CU097935 vs. TrEMBL
Match: A0A0A0KAB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091860 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-21
Identity = 57/68 (83.82%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 103 GGSLGRWVEQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCSDELLV 162
           GGSLGRWVEQSVEPREALDKTII           VLALRIAGVCTSELAEDRPCSDELLV
Sbjct: 320 GGSLGRWVEQSVEPREALDKTIIGEGMEEEEEEMVLALRIAGVCTSELAEDRPCSDELLV 379

Query: 163 MLTQLQSF 222
           MLTQLQSF
Sbjct: 380 MLTQLQSF 387

Query: 223  282
           
Sbjct: 440  387

Query: 283  307
           
Sbjct: 500  387

[Close]

BLAST of CU097935 vs. TrEMBL
Match: A0A0A0KAB3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091860 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.5e-03
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 3


Query: 3   IYSFGVILRVLLTGRDPIETEQV 62
           IYSFGVILRVLLTGRDPIETEQV
Sbjct: 287 IYSFGVILRVLLTGRDPIETEQV 309

Query: 63   72
           
Sbjct: 347  309

HSP 2 Score: 99.8 bits (247), Expect = 2.5e-18
Identity = 54/69 (78.26%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 103 GGSLGRWVEQSVEPREALDKTIIXXXXXXXXXXX-VLALRIAGVCTSELAEDRPCSDELL 162
           GGSLGRWV+QSVEPREALDK+I             VLALRIAGVCTSELAEDRPCSDELL
Sbjct: 320 GGSLGRWVKQSVEPREALDKSIRGEGMEEEEEEEMVLALRIAGVCTSELAEDRPCSDELL 379

Query: 163 VMLTQLQSF 222
           VMLTQLQSF
Sbjct: 380 VMLTQLQSF 388

Query: 223  282
           
Sbjct: 440  388

Query: 283  307
           
Sbjct: 500  388

[Close]

BLAST of CU097935 vs. TrEMBL
Match: E5GB59_CUCME (Receptor-like protein kinase OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 8.5e-03
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 3


Query: 3   IYSFGVILRVLLTGRDPIETEQV 62
           IYSFGVILRVLLTGRDPIETEQV
Sbjct: 287 IYSFGVILRVLLTGRDPIETEQV 309

Query: 63   72
           
Sbjct: 347  309

HSP 2 Score: 65.9 bits (159), Expect = 4.0e-08
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 103 GGSLGRW---VEQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCSDE 162
           GGSLGRW   V+++ E +EALDK+II           ++ALRIA VC S+L  DRP SDE
Sbjct: 272 GGSLGRWLHQVQEAGEAQEALDKSIIGEEVEEDEM--LMALRIAVVCQSDLPADRPSSDE 331

Query: 163 LLVMLTQLQSF 222
           L+ MLTQL SF
Sbjct: 332 LVPMLTQLHSF 340

Query: 223  282
           
Sbjct: 392  340

Query: 283  307
           
Sbjct: 452  340

[Close]

BLAST of CU097935 vs. TrEMBL
Match: A0A164TGP6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024629 PE=4 SV=1)

HSP 1 Score: 34.3 bits (77), Expect = 1.3e+02
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 3


Query: 3   IYSFGVILRVLLTGRDPIE 60
           I+SFGVIL +LLTGRDP++
Sbjct: 245 IFSFGVILGILLTGRDPLD 263

HSP 2 Score: 65.9 bits (159), Expect = 4.0e-08
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 97  AVGGSLGRWV---EQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCS 156
           A GGSLGRW+   +Q+ E REALDK+I+           ++A+RIA VC S+L  DRP S
Sbjct: 320 AGGGSLGRWLRHLQQAGEAREALDKSILGEEVEEDEM--LMAVRIAVVCLSDLPADRPSS 379

Query: 157 DELLVMLTQLQSF 216
           DEL+ MLTQL SF
Sbjct: 380 DELVPMLTQLHSF 390

Query: 217  276
           
Sbjct: 440  390

Query: 277  307
           
Sbjct: 500  390

[Close]

BLAST of CU097935 vs. TrEMBL
Match: F6HJ63_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00020 PE=4 SV=1)

HSP 1 Score: 33.9 bits (76), Expect = 1.7e+02
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 3


Query: 3   IYSFGVILRVLLTGRDPIE 60
           ++SFGVIL VLLTGRDP++
Sbjct: 295 VFSFGVILGVLLTGRDPMD 313

HSP 2 Score: 65.1 bits (157), Expect = 6.8e-08
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 97  AVGGSLGRWV---EQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCS 156
           A GGSLGRW+   +Q+ E REALDK+II           ++A+RIA VC S+L  +RP S
Sbjct: 283 ASGGSLGRWLRHLQQAGEAREALDKSIIGEEGEEDEM--LMAVRIAVVCLSDLPAERPSS 342

Query: 157 DELLVMLTQLQSF 216
           DEL+ MLTQL SF
Sbjct: 343 DELVHMLTQLHSF 353

Query: 217  276
           
Sbjct: 403  353

Query: 277  307
           
Sbjct: 463  353

[Close]

BLAST of CU097935 vs. NCBI nr
Match: gi|449445592|ref|XP_004140556.1| (PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-21
Identity = 57/68 (83.82%), Postives = 57/68 (83.82%), Query Frame = 1


Query: 103 GGSLGRWVEQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCSDELLV 162
           GGSLGRWVEQSVEPREALDKTII           VLALRIAGVCTSELAEDRPCSDELLV
Sbjct: 320 GGSLGRWVEQSVEPREALDKTIIGEGMEEEEEEMVLALRIAGVCTSELAEDRPCSDELLV 379

Query: 163 MLTQLQSF 222
           MLTQLQSF
Sbjct: 380 MLTQLQSF 387

Query: 223  282
           
Sbjct: 440  387

Query: 283  307
           
Sbjct: 500  387

[Close]

BLAST of CU097935 vs. NCBI nr
Match: gi|659119914|ref|XP_008459910.1| (PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 1.6e-18
Identity = 54/69 (78.26%), Postives = 56/69 (81.16%), Query Frame = 1


Query: 103 GGSLGRWVEQSVEPREALDKTIIXXXXXXXXXXX-VLALRIAGVCTSELAEDRPCSDELL 162
           GGSLGRWV+QSVEPREALDK+I             VLALRIAGVCTSELAEDRPCSDELL
Sbjct: 320 GGSLGRWVKQSVEPREALDKSIRGEGMEEEEEEEMVLALRIAGVCTSELAEDRPCSDELL 379

Query: 163 VMLTQLQSF 222
           VMLTQLQSF
Sbjct: 380 VMLTQLQSF 388

Query: 223  282
           
Sbjct: 440  388

Query: 283  307
           
Sbjct: 500  388

[Close]

BLAST of CU097935 vs. NCBI nr
Match: gi|296085518|emb|CBI29250.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 97  AVGGSLGRWV---EQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCS 156
           A GGSLGRW+   +Q+ E REALDK+I+           ++A+RIA VC S+L  DRP S
Sbjct: 304 AGGGSLGRWLRHLQQAGEAREALDKSILGEEVEEDEM--LMAVRIAVVCLSDLPADRPSS 363

Query: 157 DELLVMLTQLQSF 216
           DEL+ MLTQL SF
Sbjct: 364 DELVPMLTQLHSF 374

Query: 217  276
           
Sbjct: 424  374

Query: 277  307
           
Sbjct: 484  374

[Close]

BLAST of CU097935 vs. NCBI nr
Match: gi|731377185|ref|XP_010657252.1| (PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Vitis vinifera])

HSP 1 Score: 67.4 bits (163), Expect = 2.0e-08
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1


Query: 97  AVGGSLGRWV---EQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCS 156
           A GGSLGRW+   +Q+ E REALDK+I+           ++A+RIA VC S+L  DRP S
Sbjct: 320 AGGGSLGRWLRHLQQAGEAREALDKSILGEEVEEDEM--LMAVRIAVVCLSDLPADRPSS 379

Query: 157 DELLVMLTQLQSF 216
           DEL+ MLTQL SF
Sbjct: 380 DELVPMLTQLHSF 390

Query: 217  276
           
Sbjct: 440  390

Query: 277  307
           
Sbjct: 500  390

[Close]

BLAST of CU097935 vs. NCBI nr
Match: gi|1021029710|gb|KZM87495.1| (hypothetical protein DCAR_024629 [Daucus carota subsp. sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.6e-08
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 1


Query: 103 GGSLGRW---VEQSVEPREALDKTIIXXXXXXXXXXXVLALRIAGVCTSELAEDRPCSDE 162
           GGSLGRW   V+++ E +EALDK+II           ++ALRIA VC S+L  DRP SDE
Sbjct: 272 GGSLGRWLHQVQEAGEAQEALDKSIIGEEVEEDEM--LMALRIAVVCQSDLPADRPSSDE 331

Query: 163 LLVMLTQLQSF 222
           L+ MLTQL SF
Sbjct: 332 LVPMLTQLHSF 340

Query: 223  282
           
Sbjct: 392  340

Query: 283  307
           
Sbjct: 452  340

The following BLAST results are available for this feature:

BLAST of CU097935 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRN_ARATH	1.0e-09	52.05	Inactive leucine-rich repeat receptor-like protein kinase CORYNE OS=Arabidopsis ...	[more]

BLAST of CU097935 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAB3_CUCSA	1.8e-21	83.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091860 PE=4 SV=1	[more]
A0A0A0KAB3_CUCSA	8.5e-03	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091860 PE=4 SV=1	[more]
E5GB59_CUCME	8.5e-03	100.00	Receptor-like protein kinase OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A164TGP6_DAUCA	1.3e+02	73.68	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_024629 PE=4 SV=1	[more]
F6HJ63_VITVI	1.7e+02	73.68	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00020 PE=4 SV=...	[more]

BLAST of CU097935 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445592\|ref\|XP_004140556.1\|	1.2e-21	83.82	PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Cuc...	[more]
gi\|659119914\|ref\|XP_008459910.1\|	1.6e-18	78.26	PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Cuc...	[more]
gi\|296085518\|emb\|CBI29250.3\|	2.0e-08	53.42	unnamed protein product [Vitis vinifera]	[more]
gi\|731377185\|ref\|XP_010657252.1\|	2.0e-08	53.42	PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Vit...	[more]
gi\|1021029710\|gb\|KZM87495.1\|	2.6e-08	54.93	hypothetical protein DCAR_024629 [Daucus carota subsp. sativus]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR011009	Kinase-like_dom_sf

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Csa6G091860	Csa6G091860	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
G0018490	G0018490	EST
G0019670	G0019670	EST
G0027771	G0027771	EST
G0032416	G0032416	EST
G0032586	G0032586	EST
G0085464	G0085464	EST
G0087569	G0087569	EST
G0097245	G0097245	EST
G0101367	G0101367	EST
G0116277	G0116277	EST
G0130921	G0130921	EST
G0151005	G0151005	EST
G0184669	G0184669	EST
H0018689	H0018689	EST
H0099277	H0099277	EST
H0131572	H0131572	EST

InterPro

Analysis Name: InterPro Annotations of cucumber unigene v3
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011009	Protein kinase-like domain	unknown	SSF56112	Protein kinase-like (PK-like)	coord: 2..98 score: 1.1
None	No IPR available	GENE3D	G3DSA:1.10.510.10		coord: 2..98 score: 2.
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 2..96 score: 2.7
None	No IPR available	PANTHER	PTHR27000:SF71	SUBFAMILY NOT NAMED	coord: 2..96 score: 2.7