CU088748 (transcribed_cluster) Cucumber (Chinese Long) v2

Overview
NameCU088748
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 19104423 .. 19104713 (-)
Sequence length222
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

TCAAAACCCTACCATTGCAGAAGCTTAAAAACAGAGCGACTCCAATAAACATCAAAATGATTGATCATTGCTCTGTCAAAACCGCATAATAACTGATACCGGAGATTTGCATATAGACCAAGAAAAGCACCATACCCGAGAGCATTGGTACTCACAGTTGGAACTGATACAGATAACCTTTCCTGCTTTTTACTAGAGAGAAAATTGGACAAAACACCCTAA
Library
Library categoryESTs
gynoecious flower library2
Homology
[Close]
BLAST of CU088748 vs. TrEMBL
Match: A0A0A0KDZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G411290 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV
Sbjct: 371 GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 427

Query: 108  167
           
Sbjct: 431  427

Query: 168  219
           
Sbjct: 491  427

[Close]
BLAST of CU088748 vs. TrEMBL
Match: A0A061E505_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_006400 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-20
Identity = 48/57 (84.21%), Postives = 56/57 (98.25%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           G LSNFL+SKK+E+LSV++P+VSTNALGYGAFLGLYANLRYQLLCGFD+AM+NHFDV
Sbjct: 353 GFLSNFLASKKKEKLSVTIPSVSTNALGYGAFLGLYANLRYQLLCGFDQAMVNHFDV 409

Query: 108  167
           
Sbjct: 413  409

Query: 168  219
           
Sbjct: 473  409

[Close]
BLAST of CU088748 vs. TrEMBL
Match: A0A0D2T018_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G041900 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.0e-20
Identity = 47/57 (82.46%), Postives = 56/57 (98.25%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           G LSNFL+SKK+E+LSV++P++STNALGYGAFLGLYANLRYQLLCGFD+AM+NHFDV
Sbjct: 197 GSLSNFLASKKKEKLSVTIPSMSTNALGYGAFLGLYANLRYQLLCGFDQAMVNHFDV 253

Query: 108  167
           
Sbjct: 257  253

Query: 168  219
           
Sbjct: 317  253

[Close]
BLAST of CU088748 vs. TrEMBL
Match: A0A0D2R919_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G041900 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.0e-20
Identity = 47/57 (82.46%), Postives = 56/57 (98.25%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           G LSNFL+SKK+E+LSV++P++STNALGYGAFLGLYANLRYQLLCGFD+AM+NHFDV
Sbjct: 354 GSLSNFLASKKKEKLSVTIPSMSTNALGYGAFLGLYANLRYQLLCGFDQAMVNHFDV 410

Query: 108  167
           
Sbjct: 414  410

Query: 168  219
           
Sbjct: 474  410

[Close]
BLAST of CU088748 vs. TrEMBL
Match: A0A0B0MX08_GOSAR (Ribonuclease 3 OS=Gossypium arboreum GN=F383_03169 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.0e-20
Identity = 48/57 (84.21%), Postives = 56/57 (98.25%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           G LSNFL+SKK+E+LSVS+P+VSTNALGYGAFLGLYANLRYQLLCGFD+AM+N+FDV
Sbjct: 304 GSLSNFLASKKKEKLSVSIPSVSTNALGYGAFLGLYANLRYQLLCGFDQAMVNYFDV 360

Query: 108  167
           
Sbjct: 364  360

Query: 168  219
           
Sbjct: 424  360

[Close]
BLAST of CU088748 vs. NCBI nr
Match: gi|449444691|ref|XP_004140107.1| (PREDICTED: uncharacterized protein LOC101205574 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV
Sbjct: 371 GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 427

Query: 108  167
           
Sbjct: 431  427

Query: 168  219
           
Sbjct: 491  427

[Close]
BLAST of CU088748 vs. NCBI nr
Match: gi|659097051|ref|XP_008449416.1| (PREDICTED: uncharacterized protein LOC103491309 [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 1.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV
Sbjct: 374 GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 430

Query: 108  167
           
Sbjct: 434  430

Query: 168  219
           
Sbjct: 494  430

[Close]
BLAST of CU088748 vs. NCBI nr
Match: gi|590683122|ref|XP_007041517.1| (Uncharacterized protein TCM_006400 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 2.3e-20
Identity = 48/57 (84.21%), Postives = 56/57 (98.25%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           G LSNFL+SKK+E+LSV++P+VSTNALGYGAFLGLYANLRYQLLCGFD+AM+NHFDV
Sbjct: 353 GFLSNFLASKKKEKLSVTIPSVSTNALGYGAFLGLYANLRYQLLCGFDQAMVNHFDV 409

Query: 108  167
           
Sbjct: 413  409

Query: 168  219
           
Sbjct: 473  409

[Close]
BLAST of CU088748 vs. NCBI nr
Match: gi|763780724|gb|KJB47795.1| (hypothetical protein B456_008G041900 [Gossypium raimondii])

HSP 1 Score: 104.8 bits (260), Expect = 6.7e-20
Identity = 47/57 (82.46%), Postives = 56/57 (98.25%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           G LSNFL+SKK+E+LSV++P++STNALGYGAFLGLYANLRYQLLCGFD+AM+NHFDV
Sbjct: 354 GSLSNFLASKKKEKLSVTIPSMSTNALGYGAFLGLYANLRYQLLCGFDQAMVNHFDV 410

Query: 108  167
           
Sbjct: 414  410

Query: 168  219
           
Sbjct: 474  410

[Close]
BLAST of CU088748 vs. NCBI nr
Match: gi|728820951|gb|KHG04044.1| (Ribonuclease 3 [Gossypium arboreum])

HSP 1 Score: 104.8 bits (260), Expect = 6.7e-20
Identity = 48/57 (84.21%), Postives = 56/57 (98.25%), Query Frame = -2 

Query: 48  GVLSNFLSSKKQERLSVSVPTVSTNALGYGAFLGLYANLRYQLLCGFDRAMINHFDV 107
           G LSNFL+SKK+E+LSVS+P+VSTNALGYGAFLGLYANLRYQLLCGFD+AM+N+FDV
Sbjct: 304 GSLSNFLASKKKEKLSVSIPSVSTNALGYGAFLGLYANLRYQLLCGFDQAMVNYFDV 360

Query: 108  167
           
Sbjct: 364  360

Query: 168  219
           
Sbjct: 424  360

The following BLAST results are available for this feature:
BLAST of CU088748 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDZ4_CUCSA1.5e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G411290 PE=4 SV=1[more]
A0A061E505_THECC2.7e-2084.21Uncharacterized protein OS=Theobroma cacao GN=TCM_006400 PE=4 SV=1[more]
A0A0D2T018_GOSRA8.0e-2082.46Uncharacterized protein OS=Gossypium raimondii GN=B456_008G041900 PE=4 SV=1[more]
A0A0D2R919_GOSRA8.0e-2082.46Uncharacterized protein OS=Gossypium raimondii GN=B456_008G041900 PE=4 SV=1[more]
A0A0B0MX08_GOSAR8.0e-2084.21Ribonuclease 3 OS=Gossypium arboreum GN=F383_03169 PE=4 SV=1[more]
BLAST of CU088748 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449444691|ref|XP_004140107.1|1.3e-23100.00PREDICTED: uncharacterized protein LOC101205574 [Cucumis sativus][more]
gi|659097051|ref|XP_008449416.1|1.3e-23100.00PREDICTED: uncharacterized protein LOC103491309 [Cucumis melo][more]
gi|590683122|ref|XP_007041517.1|2.3e-2084.21Uncharacterized protein TCM_006400 [Theobroma cacao][more]
gi|763780724|gb|KJB47795.1|6.7e-2082.46hypothetical protein B456_008G041900 [Gossypium raimondii][more]
gi|728820951|gb|KHG04044.1|6.7e-2084.21Ribonuclease 3 [Gossypium arboreum][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa6G411290Csa6G411290gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
G0024395G0024395EST
G0157252G0157252EST