MELO3C018933T1 (mRNA) Melon (DHL92) v3.5.1

Overview
NameMELO3C018933T1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionProbable Fe(2+)-trafficking protein
Locationchr7 : 13576861 .. 13577118 (+)
Sequence length258
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAGTGTAAAGCAGATTCCTCAGGTAGAGGTAAAGGATGAGGTTTGGTCAGCCACAACCGTTCACTGCATAATTGGCATCCACAAGAACAGGGCAAAGTTAAAATTCCTTAGAACCAAGCAAGATGGTAAATCTGAGGTTGAAAAAGTGAACGGTGAAGATGAAGATGAGAAAGAAGAAGAAGAAGTCCCACAAAAATGCAAACAACAAAGCAAGGAAGGAGGCCTCTGGATTGAAAAGAGTAAAATCCTCTAA

mRNA sequence

ATGTTCAGTGTAAAGCAGATTCCTCAGGTAGAGGTAAAGGATGAGGTTTGGTCAGCCACAACCGTTCACTGCATAATTGGCATCCACAAGAACAGGGCAAAGTTAAAATTCCTTAGAACCAAGCAAGATGGTAAATCTGAGGTTGAAAAAGTGAACGGTGAAGATGAAGATGAGAAAGAAGAAGAAGAAGTCCCACAAAAATGCAAACAACAAAGCAAGGAAGGAGGCCTCTGGATTGAAAAGAGTAAAATCCTCTAA

Coding sequence (CDS)

ATGTTCAGTGTAAAGCAGATTCCTCAGGTAGAGGTAAAGGATGAGGTTTGGTCAGCCACAACCGTTCACTGCATAATTGGCATCCACAAGAACAGGGCAAAGTTAAAATTCCTTAGAACCAAGCAAGATGGTAAATCTGAGGTTGAAAAAGTGAACGGTGAAGATGAAGATGAGAAAGAAGAAGAAGAAGTCCCACAAAAATGCAAACAACAAAGCAAGGAAGGAGGCCTCTGGATTGAAAAGAGTAAAATCCTCTAA

Protein sequence

MFSVKQIPQVEVKDEVWSATTVHCIIGIHKNRAKLKFLRTKQDGKSEVEKVNGEDEDEKEEEEVPQKCKQQSKEGGLWIEKSKIL*
Homology
[Close]
BLAST of MELO3C018933T1 vs. TrEMBL
Match: A0A0A0LAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.6e-11
Identity = 37/81 (45.68%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 4   VKQIPQVEVKDEVWSATTVHCIIGIHKNRAKLKFLRTKQDGKSEVEKVNGED-EDEKEEE 63
           ++++PQVEVKD +W  +T+H II IHKN+AK+K L+TK +G   V++++ +D E+E +++
Sbjct: 101 LEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTK-EGCKVVKEIDDDDVEEEDKKD 160

Query: 64  EVPQKCKQQSKEGGLWIEKSK 84
            +PQK K+Q KE  L  +K+K
Sbjct: 161 NIPQKRKRQDKEDDLGSKKAK 180

[Close]
BLAST of MELO3C018933T1 vs. NCBI nr
Match: gi|659123193|ref|XP_008461541.1| (PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo])

HSP 1 Score: 95.1 bits (235), Expect = 6.2e-17
Identity = 45/80 (56.25%), Postives = 65/80 (81.25%), Query Frame = 1 

Query: 4  VKQIPQVEVKDEVWSATTVHCIIGIHKNRAKLKFLRTKQDGKSEVEKVNGEDEDEKEEEE 63
          + ++ QV+VKDE+ S++T+HCII IHKN+AKLK L+TKQDGKS+V+ V+ EDE+EKE+++
Sbjct: 2  LDKLSQVKVKDEILSSSTLHCIIAIHKNKAKLKCLKTKQDGKSKVKTVDDEDEEEKEKDD 61

Query: 64 VPQKCKQQSKEGGLWIEKSK 84
          VP K K+Q +E  L  +K K
Sbjct: 62 VPLKRKRQGEEEALGSKKIK 81

[Close]
BLAST of MELO3C018933T1 vs. NCBI nr
Match: gi|700202594|gb|KGN57727.1| (hypothetical protein Csa_3G263250 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 5.1e-11
Identity = 37/81 (45.68%), Postives = 61/81 (75.31%), Query Frame = 1 

Query: 4   VKQIPQVEVKDEVWSATTVHCIIGIHKNRAKLKFLRTKQDGKSEVEKVNGED-EDEKEEE 63
           ++++PQVEVKD +W  +T+H II IHKN+AK+K L+TK +G   V++++ +D E+E +++
Sbjct: 101 LEKLPQVEVKDGIWLPSTLHRIIAIHKNKAKIKCLKTK-EGCKVVKEIDDDDVEEEDKKD 160

Query: 64  EVPQKCKQQSKEGGLWIEKSK 84
            +PQK K+Q KE  L  +K+K
Sbjct: 161 NIPQKRKRQDKEDDLGSKKAK 180

The following BLAST results are available for this feature:
BLAST of MELO3C018933T1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAN0_CUCSA3.6e-1145.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G263250 PE=4 SV=1[more]
BLAST of MELO3C018933T1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123193|ref|XP_008461541.1|6.2e-1756.25PREDICTED: H/ACA ribonucleoprotein complex subunit 4-like [Cucumis melo][more]
gi|700202594|gb|KGN57727.1|5.1e-1145.68hypothetical protein Csa_3G263250 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C018933MELO3C018933gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C018933T1MELO3C018933T1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018933T1.cds1MELO3C018933T1.cds1CDS