Lsi08G001850.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G001850.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRetrotransposon protein, putative, Ty1-copia subclass
Locationchr08 : 3972167 .. 3983781 (+)
Sequence length798
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAGGTTATTGTTCTACTATAGGTTCATCTAGTTGATTGGGTTGGGAAGTAATTAACTAAAGAAAGTGCCAAAACGCTTTACATGTTGCTACTTGAATTTTAATTTGGACTCGATTTTCTCTTCTACATACCTAGCTCATTCAAATTCATCAAAGACTACATCTCTACTAATTAGAATTCTAGATGAATTAGGTTCTAAGCAACATATTATTGCGTTGATATTGGCTATATTTTTTCTTACAGATAATGATGTTGGCAATTATGTCCTACATCTTGTTTTATGTATTGTCAAGCATGATGTTTCACCATGTGTAGATTGGAAGTATTTTTCTTGTTTAAGTTAGGATTGTCGTTTTTTCTAGTTCTTTTTATTTTCTGGTGGCTTGATAGCATCGAAAATGTGCTATCATGTTCAGTTTAATTTAAGATCATTCATTGGTTTTATATGTTTATTTAGTGATTGTTACAGGTCTCGGACATCAAAGAGGTAGAATCGAGCGTTAGGATCAAAATGAAGCTACAACGAACAAAAACAGAGCTCAAATGCATTAACCGAGGAAAGCATAGGCAAAAGTACGAAAATACCCTTGGAGGCCCAACACCACAACGGAATTCCAATAGCCTCAAATGCATTGAGCGCCGCGACACTACGTAGGTTGACGGATGCACGCGCGATGAAACACTCTAGGCCTAGGATTCAGAATCCGGATTCAGCAACTGATGGCCCCAACATTCGTCTACATCCTGACAACATCATCCTTACTTGACTTGAATACTTCTAAGAGTGAAGACTATCCCCACAAACCAACACGAGTCATTTCAGCATGCTTTATCCTCACTCACATGCTTCCTAAGAAAATTTCCAAGAGGTCACCCGACATAGAAGTGCTCAAAGCTAATCACATTTAACTTTGAAGTTTTTATGATTGAGTGGTCTAGCGGAATTCGTTGCCTAATTTCGGACCAAATTTTTTTTTAAATTATTTCTACCTAAATGTGTATCAATGGTAGCACCGGTCAAACATAGGGAACTGTTAAATTTCTCTATTAAATGGTTTACAGTTCGAGGTAACCACGGGGGGTTGTAATTAGTTTGTTGATTATTGTAAGAAAAATAATCTGCATAAAGTAAATTGCAGATTAAATCCAATGATTAAAAACATAGCCTAGACATTCAAGTTAATTCCCCAATTTTGCAACTTGATCATAGGTTCATCAGATAATTCCTATATTATCTAACTTTAACTGACTCACCTAAAAGTGCTACGTGGGAGTCCTAATTATCGAATTAACCAATTTAATTAGATGAAACACATCCTAACTAGTTGGCTAACTGCATTAAGATCAAGGAATCCACCAAGATGAATTTCTAATAGGAAACGCCTAATTAGTCATTTAATATGATTCTTCCCTAGGTCAATTAATCAGTGTTCGTTGATCTCAATTCATAACTTACAAGCTAATCTAATCTGTTGCTACACTGAATTAACATGTAATTAATTAAAATTAAATCTTAGCTATTGATCATAAATCATCAAGCAGAACTACAATCAAAATCATTCATAACCAGAGAAGGAATCAAAAGGTAATACAAAAAAATTGATGTAAAATGATCTAAACGTCACAAGTGTGCAAAACGAGGAAAACTACTCTATGCTTAGACTAGAAAATGTTACCTTAGCCTATAATGGGCATCATGGACATCAAAGGATTGTCCTCATAGCCGAAGTTCATAACTTTAACGATCACCTCTGACGGCCAACTCCAACAACCACCGCCTGCACCCAACTACGGCAACTTCCAACCACCCCTATTGACGACCAACTTTGGCGACCACCTCCGACAGCCAACTCCAGCGACATCCAATCACCACTGCTGAGAGCCAACTCTGGCAACCTCCAACGGTGGCCATTCCACCAACTCCGACGACCATTATTTTAAATTATGACTACTACAAATTTGAAGTTTATTGACACATCCTCTCTTTTAAATTTTGACTACTACTCAAAATCCTCTCTTTGCTACAGTGTTTACTATTTTTTGCTCATCCTCTCTTTTTTTTCTTTTCTACAGTGTTTACTATTTTCTACCCAAACAAAACTATTTTACACCCTAATCACAAATTATTATAATTTAGACCATAATAGTCTGCTTCCCAAACACAAAATATTATAACTCATTGACTATTATAACCCACTGACTATAATAACCAACTCAGCATCCCAAACGCCCCCTAAATATTTATATTTAAGTTAACGCACAAAATTGTCAAGAAAAACACCTTGATTGACAGAAAAGTACGTAAGTTTCATCAGAACGTTGAATTTCTGGTTTTTTTATTAGTTCATAGTATTTTATAGTCATTCTTTATAGTAATTGAACATTCATAAGATCACTTTTATCATGTAAGAAATCGAATAATTTGTATGTAAAAATAAACTTTTAAGAAAAAATTGTCAGACACATAAGTAGTTTATATTTTAAAAAGTTTTTATCAAAAATGTTAAAATAAAAATGACTTAACTAGAAACGTCACCTGCACAAATTTGTAAAATGATTGCTTAAATTAAAAAAAAATGAAATGCATGATCCAAAAGTAAACTCTAAACCTCATTTCCCAAAACTCCCAACAATATATATGTATTTAAAAAATAATAAAATAAAGTGCAATCTATAGTTTATTTAAAAAATATGAATAAAAAAATTTTCAAAAAAAAAACAATCATCATAAAAACAGATTATTTATGTAAAAAAAAAAATTACATCAGATACGCCTGACATATGAACTCAGCACCCCAAACACCCAAAATACAGACATATGAACTCCACAGACATATAAACTTCACAGACATCATATCTCTAAACTTCATATCTCAACTCAGCACCCTAAACAGCCCCTCAGGATTAAAATCGAGTCACATATGATCATCCTATGAAATGTCAATCTCTTCAATTAACGACGTTATAAAAAGAGACGAAACATTTCGCGGTTCAGTCTTATACAAACTCTTTGTGTAGGATACCCTCACTCGCATGTCTCTACATGAACGATTAGGATCAAATTGTTTGTAACACTTTACAACTTTTGTAACAATTACAAAGTGGGTCGTATCCGTAGTGTCACAGGATCAGACACCCAACCTTATCCATATACTACAGACCATGTAGTTTATTACTTAAACATGATGCACATGTATTGTTAAGTTAGTTACTAGTTGTTGGTTGATCTCAACTTCATTTCTGACCTCTCTTTCTTCCTATAAATAGGCCTCACTTAAGTTTTTTTATATTATTTTTTGTACTGTGATATAGAGAGATAAGAGTGTATCTTGTGTCTGTAGGCCTTTTGTTAAATTCATTCAAGAATAAAGATAAAGTTTTCTTTGATCAGTGGATGTAAGCCTTGTGCTGAATCACTTTAATCTCTTGGTGTTTTTTTCTTTCTTCCTCTTATCTTCTCTTATTTTCATCTCTGCTCTTAAGTTTTACTTGGTTGTTCTTATTGTTGGGCAAAGTTTCTATCTTCATAATATTTTTATCAAGCATGATTTAGTTTCCAGCTTGAGGTCTTTTTTATTACAGTGGTATCAGAGCCCAACCACGACCAAGAAACTAATTCTTGATTTAGTCAAGAATGACTGTTGCGAGGTTTGATATAGACAAGTTTGATGGTAAGTCAGACTTTGGGTTATGGAAGGCCAAGATCAAAGCCATCTTAGGCCAGCAAAAAGCTTTGAAAGCTTTTGAAGACCCAAACAAACTTTCCGAGAGCATCACAGCAGATGAAAGAGAAACTTTGGAATCTATAGCATATGTGACTCTAATTCTAAATCTCACTGACAATGTCCTTAGACAGGTTATTGAAGAAGAGTCATCTTTTAAGATTTGGACCAAGCTAAATGAGCTTTATGTGTCAAAGGACTTATCAAATAAAATGTACATTCGAGAAAAATTCTTTACCTTCAAGATGGATCTTTCTAAAGGAGTTTCTGAAAATCTTGATGATTTTAAAAGAATCACTACCGAATTCAAGAATCTTGGAGAGAAACTTGGAGATAAAAATGAGTCTTTCATTCTCCTGAATTCATTACTAGAAAGCTATAAAGATGTCAAGACAGCCTTGAAATATAGCAGAAATTCTATCACAGTAAGTGCAATCATCTCAGCCATAAAGACTAAAGAAATGGAGCTTCAGTCTTCAACTAAAGATACTCAGAATGCAGAAGGTCTTTTTGTCAAAGGCAAATATAAATCCAAGAACTAACAGACTGAAGAGAAGGGGAAGAATAAACCAAAATGTAATTACTGTCACAAGGAAGACCATTGGAAGAAAGATTGTTGGTCTCTTAACAGAAAGCAAAACAAGAAAAACAAGAATCCAAAACAAAGTGAACCATCACTTCCAGCTACTGAAAGCTCTTTCTCGTTCTCTGATGCTCTAACCATAACAGAAAGAGATGAAGAAAGTTCAAGATCACAAACTAGTGCAGATTGGGTTTTGGATTCTGGTTGTTTCTACCACATGACACTAGATAAAGAATGGTTCTACACTTATAAAAGCTGGGATGGTGGATTAGTATTCATGGGGAATCATGATTCATGTGAAATAGTAGGAATTGGATCAGTATCCTTACAACTTCAAGATGGCACTGCTACTCTTTTGAGAAATGTAAGACATGTACCAAACCTTAAAAGAAATCTTATCTCCTTAGATATGCTTGACTCAATAGACTGCCAATACAAGGATCAAGAAGGAAAGCTTCATGTTTTAAACGACTCAAAAATTGTTCTAACAGGAGAAAAGAGGAATGGTGTGTATGTCATTAAAAATGTACACAAATCTCAAACAGCTTTAACTATCACAAACAGCAAGATGACCATAGGAGACCTCTGGCACAAACGACTATCACATATCAGTTCTAAAGGCCTGGAGGCCCTCTCCAAACAAGGTATTCTACCCAATGGAATAGCAGAACAGATGAAGTTTTGTGAGTTTTGCATAATTGGTAAGGCCAAAAGACAGAGTTTTCAGAGGTCTGAACTCAAATCAACAGACATTCTATCTTATGTGCACTTGGATCTTTGGGGACCTGCTCAAACTCCCTCACTCAGTAATTCAAGGCTTTACTGATGATTATTCAAGGAAGAGCTGGATTTATATTTTGAAAATCAAAGACCAAGTGTTTGAAAAATTCAAAGAATGGAAAACATGTTGAGAAACAAACTTCAAAAACTATTAAATGTCTTAGAACTGATAATGGTCTTGAATTTTGCAACAATGAGTTTGACCAATTTTGCAAAAGTGAAGGAATAGTTAGGCATCGTACTGTCAGGTACACTCCTCAGCAAAACGGTATAGCAAAGAGGCTAAACAGGACTATAATGGAAAGAGTAAGGTGTCAGCTCTCAGACGCAATGCTCCCTGAAAAGTTATGGGCAGAGGCAATCTCTTACACTGTTCATACTCTAAACAGGTGCCCTCATCACTCTTTAGGCCTTCTAACACCTGAAGAGAAATGGACTGGTAAGACTCCAAAACTGGATCACTTGAAGGTTTTTGGTAGTGTAGCCTATGTTCATCAAAATCATGGAAAGCTTAAGCCTAGAGCCGTGAAATGTATGTTTATTGGCTTCACCAAAGGAGTTAAAGGATACAGACTCTGGCATCCTGTTGAACAAAAATGCATCAATAGTAGAGATGTGACATTTAGAGAAGAGGAGATGTTCATGTCTCAAGAAGATAGTGTAGGCTCAAGTTGAGGTGGAATACATTACAGAGCCAAGCACTAGCAGACTTGAGCATGACACTACTTTTTCTGATCTACCTGAGTCAGTGGTAGAATAGGATTCTTACACGGACTTGCCTAACCTATAGGACTATTCTGTTGCAAGGGACAGACAAAGAAGACAAATAAAATCCCCTGCAAGGTATGTTGATTTTGTTTCTTGTGTTTTAAATGCAGAAGCTTATGTGAATAATTCAGAGCCCTCAAACTTCAATCAAGCTGTAAGTGGACCTAATGCTAGAGAATGGATTGCTGCTATGAATGAAGAAATGGATTCTTTGTTAAAAAATGAGACCTGGATTCTTCAACCTCTTCCCAAAGGTTACAAACCCATAGCTTCCAAGTGGATCTACAAAATAAAGGAGGGGGTGACTAACAACCAACCACCTAGATACAAAGCTAGACTTGTGGCTAAGGGGTTCACTCAAAAGGAAGGTATAGACTATAATGAGATATTCTCTCCTGTAGTAAAGCAAACCTCAATTAGATTGTTGTTTTCTCTAGTAGTTCAGAATGATTTGGAGCTAGACCAGCTGGATGTGAAGACTGCCTTCTTACATGGGCATTTAAATGAAACCATATATATGGTGCAGCCTCAAAGGTATGCTCAAAAGGGAAGTGAAGACCTTGTTTGTCTTCTTAAAAGGTCTATATATGGTCTTAAGCAGTCTCCTCGTTGCTGGTACCAAAGATTTGATGATTATGTTTCAACGATTGGATTCACAAGAAGCTCTTTTCACAGCTGTGTTTACATAAACACTAACACCTATGATGAGAGAGTGTACTTGTTACTCTATGTAGATGACATGCTCCTTGCAGTAAAATCAAAAGAAGTCATAAAGAAAGTGAAAATGTTACTCAAGAGAGAATTTGAGGTTAAAGATATGGGTGATGCCAAGAAAATTCTTGGCATTGGAATCACTAGAGATAGAAAGTCTTCATCTCTAACCATAAGTCAGAGCCATTATTGTGATAAAATACTTCATAGATTCAACATGAAGGAAGCAAAACAAGTTTCAGTTCCTCTAGCTCAACACTTTAAGCTCTCATCAGGTAACTGTTCGAAGGAACAAGAGACAGATCACAGATACTACATGGACCTAATTCCTTATTCTCAAGCAGTGGGAAGTCTAATGTATCTTATGATCTCAACAAGATCTGATTTGGCTTATGCTTCTAGTCTTGTTAGCAGATTCATGTCTAATCCTGGCAGAAGACACTGGGAGGCAACAAAATGGATCTTAAGATACTTGAAATATTCAAATGAAGCTAGTCTAATCTACAAACAAAATGATACTTCCAAAGATTATCTTTATGTGTATGTAGATTTTGATTTTGCAGGGGACTTTGACAAAAGAAGATCCTTGTCTAGCTATATTTTCTTAATTGGGAAAAATATCCTAAGCTGGAAAGCCTCTTTACAGTCAGTAATTAATTGCCTTTTCAACAACTGAGGCAGAATTCGTTGCATTGGAAAAAGCTGTCAAAGAAGCCTTATGGCTGAAAGCTTTATTAAGAGACTTTGGGATCATTCAAGACTCAATTCAGATTTTTTGTGATAACCAAAGTATAATACATCTATCTAAAAACTAACAATTTCATACTCGAACAAAGAATATTGACATCAAATATCATTTTGTTCGAGAAGAAATTGAAAAAGGGAAAATAGAAGTTTTGAAGGTTCACACTGCTGATAATGCCTCTGACATGCTAACAAAACCAGTTGCTAAACAGAAACTGAGACATTGTGCAAACTTAATAGGGTTAGTTCTGCCAGAGAAAGGGTGATTGTATCTTCATCAAAGAAGGTGTCAGTATTCTTGTTGGATCAAAGGTGGAAATTGTTAAGTTAGTTACTAGTTGTTGGTTGATCTCAACTACGTTTCTGACTTCTCTTTCTTCCTATAAATAGGCCTCACTTAAGTTTTCTTTATATTATCTTTTGTACTGTGATATAGAGAGATAAGAGTGTATCTTGTGTCTATAGGCCTTTTGTTAAATTCATTCAAGATTAAAGATAAAGTCTTCTTTGATCAATGGATGTAAGCCTTGTGCTGAACCACTTTAATCTCTTGGTGTTTTTTTTTTCTTCCTTTTATCTTCTTTTATTTTCATCTCTGCTCTTACGTTTTACTTGATTGTTCTTATTGCTGGGCAAAGTTTCTCTCTTCATAATATTTTCTTCAAGCATGATTTAGTTTCCAGCTTGAGGTCTTTTTTATTACATGTATGTCAACCACATACATGTTTAAGTTACATAAAATAATCACGGATTTTAGTTTATTGGATTGAGTTAATACAGTCTAAATTTCGAATAAAATATAACTCTTTATTTTATTAAATACATAATTCGTATACAAAATACAAACTATGAGAACCAAGAGATTTAGGACATCAATCCCAATAGAATATCCGTTCAATCTCAGGATCAAAAGACAAAAGATTAGAATCTTTATCACATGACATTTAATAGAATAAATGAGAGTTTTTAAAAATAGAAAAATGAGAAAAACTATTTACACAAAGTAGCAAAATTTTTAGATAGTTATGATAGACGCTGATAGAAGTCTATTAGAGTCTATCAGTGATAAAAATGATAGAAGTCTATCACTGATAGATGCTGATAGAAGTCTATCAATGTCTATCAGTATTTTTTTTGCTATTTTCTGTAAATAGTTTGACATTTTTTCTATTTATAAAAATTTCCCTAGAATAAATCCAACCAATTTTTTTTAAAAAAAACAAATAAAATACATCTTAGTCTAGAATATCTCCAATTCTTAAAATATTAAACAAAAACCATTTTTTTTTTATCAATGACAATGGTGCCTTGTGTGATTCTTGATAGGATGGTAGTAAAAACCCAAAATCGTTTAAAGACAAACTGATAATAAGATGATTAAAGGTGGATTTCATCAAAAAAAAAAAAAAATAGAATTTCCCGAAAACATGTATTCTATATTTTTTCCATAAGGAATCGAGCAGGTCCTTACAAGAAAAAAGACAGAATACCAAAAATTTGATTAAAAATAATTTGCAATGAGCAATTAAGGTTGTTTATATCACTTCCCAATCCACTATTGCTACCATGCACAGGTTTGAGGGTCGTTGATAAATAGATGGGGCCTATATGCATTCTCACCATTTAAAAAGAAACTTAGTTCAGAATCATTTCTTATCAAATACGTTGGAGCTCTAAATCCAAAATTGTATAAACATCTTAAGATAAAGGTTGTGATGGTTCGGGTTATTCCTACTTAGCTTATACGACCCTATAAAAAATTCCTCATATCTAATATCACATCTTACTTCCAATCCCTCTAGATCAACCCCCTAGATAATCTTGTTTTTCTTCCTTTTAAATACCACCATAGCAAACAAATATGCGAGACATTCTGCAAATAAATAATATAAATAGACTCATACATAAACTAGAGAGAAGTGAATTTAGACAAGAACAAAAACACCAAAGACAACTAACAAAAATCTACTATTACATGAAATCAAGATTGACCATGGAAGGAAATTGAATGAAAAAAAAAAATTGCAAAAACTACTCCTAATGTATGGTGACAGTTGCAATTATACCCATAAATTTTCAATTCTAAAAATTGAGTCCTCAAAATAACATAAGTATTAAAATTGGGTCAAATTAGACTTTCAAACTTACATAATTATATAAATTGTAACATTAGTATAAATTTGAGGGTTCAATTTTTATCATATGTGGATCCAATTTCTACAATTATTGTAAGCTTGAGGGTCCGATTTTAACACTTATAGAAGTTTAAGAACCTAATTTTTATAATTGAAAGTCTGAGAGTATTGTACTTGTAATTATCACGATACTTTAGGGGTGAATTTTACAATTTGCCTAAAAAACAAATTCTGTGAAATCTCTCGTAAAAATTGGCCACGGTCAACCTTATGGAAAATCTTGGTAAGGTTGGACCAAATTTAACTCTTACAAAAAAAATCTTGATAAAAGTAGATTGAAATCTCAAGGTGTTAAAGAAATAATAATAATAATTAAAAAAAAAAAAAAAAAAAGTTAAAAACATCATCTCTCCCTCGCAACGAAATTTTTGTTTTCAAAATTTTTCTTTAAAAATAACAACAAATTTATCATAAATTTTGATTAACACTTATCCAAAACATGAAAACAATTATACTGTTAAGATATGATATTAAATTTATCCTCCACCTATCAGCTTAAGCTTTTGGGTGAATTGACGATTGATACAAAATATTTTGGTACGAAGATGAAAGGAAAAAAAAACCAAAAAATGGTTACAATTCACAGCTAAACTTAATAGATGGAGGACAAATTTAATATCATATCTTAACATATACTCTACATAGATCAAAATAAAAAACATACTTATTATCTCATATAGATTCTAAAAAAAAAAAATAAAAATTTAAAATTTGAAGTTTAAAATTGAAGTTAGATTTAAAAAATTATATTAGATAAATTAAGTAAATAAAAGATAAAATAGACTTTTTATTATTTAGAACCCTCTAATTAAAATCTAAAAGGTAAAAAATAGTTCAAATAGTTTTAAAAAAGACGTTAATTTGAAAGGTGAAAAACTTTTTAAATTGATAAAAATGATTATGTTTAAGAATTAAGAAGATAAAACCTTACAAACAAATCTTAAAAGAAAACCGTAATTCAATAATAAAATAATAAAAAGATCATAGAAATATAATTCTAAAATCAAAATATGAGAATTCAAATACACCTTTCATCTCTTCGAAAAGAAAAAAAATATATATATATATATCTTTAAAAAAAAAAATATTTAAGGTAGGTTCGAATTGACTTAAAAAAATATTTTTTAAAAAAAAAAATTCATTTTTATTTAAACTCTTTAGATACAAATTGTTTAAAATACACCTTAAAAGTTATTTTAAATTATTGTCAAATACTTCAATTTTTTTAAAATAATTTATTTTTTAAATTAAACACTTAAAAATATATTACACACTTAATCTAAACGCAAAATAAATTAAAAGCATATTATATTTTGTACATTTTAACTAAAAAAGAAGTTACAACAATGTAACTATCTATTGAAAATATTAAAGAACTTTACCGAAGAGAAAAAGAGCTATCCTTTTCTCACTCTCTATATCATTGATTGCAATGGTTTTAACACTTGCTTGTGAATTTTTTATTAAATAATTTGAAATATTTAAATGCTTCTTGTACTACCTATCTATCTGTGCAGCCTAAAAAGCTGTCTAATAAAATACTGTCGCTGTTCTTTTGTTTTTCATAAAAAAGAAAATTTAATTTTTCGTATTAAAAAAAGAGAGTATGAAATTAGGTGGATTGCGAAGATGCCATTATTTTGCTTCTCCAAGAGTATTATTCTTGGTTCCTCAACATTACATAAAGTACCGTCTTAATTTACATATAAAACTACAGTAGAAAACATTAACCATCACAATACATAACAGCAAGAAAATTGATCTCTCACAGTTCCTGCCTCGGCCCGCCGGACTTGTTCAGCTCGGCGGCCGGCGGTTGTTCATCCAAAATGCCGACCACTCTCGGACCCTTAATCTTCTCCGGCGAAAGCTTCGACAAAGTGACCTTAAGAACCCCATTCTGAAGCTGAGCTTTAACAGACTCCAAATCCGCATTACTCGGCAGCCGAAACTGCCTCCAGAATTTTCCATAGCTTCGTTCCAATCTATGCCAATGCTCACTCTGTTTCTCCTCTTCCCTTTTCCTCTCTCCGATCACTTTCAAAATCCTGTTTTCCTCGTCCAATTCGATCTGCAGCTCCTCCTTCTTCATTCCCGGCACATCTAG

mRNA sequence

ATGGCAAAGACTGAAGAGAAGGGGAAGAATAAACCAAAATGTAATTACTGTCACAAGGAAGACCATTGGAAGAAAGATTGTTGGTCTCTTAACAGAAAGCAAAACAAGAAAAACAAGAATCCAAAACAAAGTGAACCATCACTTCCAGCTACTGAAAGCTCTTTCTCGTTCTCTGATGCTCTAACCATAACAGAAAGAGATGAAGAAAGTTCAAGATCACAAACTAGTGCAGATTGGGTTTTGGATTCTGGTTGTTTCTACCACATGACACTAGATAAAGAATGGTTCTACACTTATAAAAGCTGGGATGGTGGATTAGTATTCATGGGGAATCATGATTCATGTGAAATAGTAGGAATTGGATCAGTATCCTTACAACTTCAAGATGGCACTGCTACTCTTTTGAGAAATAAAACATTAACCATCACAATACATAACAGCAAGAAAATTGATCTCTCACAGTTCCTGCCTCGGCCCGCCGGACTTGTTCAGCTCGGCGGCCGGCGGTTGTTCATCCAAAATGCCGACCACTCTCGGACCCTTAATCTTCTCCGGCGAAAGCTTCGACAAAGTGACCTTAAGAACCCCATTCTGAAGCTGAGCTTTAACAGACTCCAAATCCGCATTACTCGGCAGCCGAAACTGCCTCCAGAATTTTCCATAGCTTCGTTCCAATCTATGCCAATGCTCACTCTGTTTCTCCTCTTCCCTTTTCCTCTCTCCGATCACTTTCAAAATCCTGTTTTCCTCGTCCAATTCGATCTGCAGCTCCTCCTTCTTCATTCCCGGCACATCTAG

Coding sequence (CDS)

ATGGCAAAGACTGAAGAGAAGGGGAAGAATAAACCAAAATGTAATTACTGTCACAAGGAAGACCATTGGAAGAAAGATTGTTGGTCTCTTAACAGAAAGCAAAACAAGAAAAACAAGAATCCAAAACAAAGTGAACCATCACTTCCAGCTACTGAAAGCTCTTTCTCGTTCTCTGATGCTCTAACCATAACAGAAAGAGATGAAGAAAGTTCAAGATCACAAACTAGTGCAGATTGGGTTTTGGATTCTGGTTGTTTCTACCACATGACACTAGATAAAGAATGGTTCTACACTTATAAAAGCTGGGATGGTGGATTAGTATTCATGGGGAATCATGATTCATGTGAAATAGTAGGAATTGGATCAGTATCCTTACAACTTCAAGATGGCACTGCTACTCTTTTGAGAAATAAAACATTAACCATCACAATACATAACAGCAAGAAAATTGATCTCTCACAGTTCCTGCCTCGGCCCGCCGGACTTGTTCAGCTCGGCGGCCGGCGGTTGTTCATCCAAAATGCCGACCACTCTCGGACCCTTAATCTTCTCCGGCGAAAGCTTCGACAAAGTGACCTTAAGAACCCCATTCTGAAGCTGAGCTTTAACAGACTCCAAATCCGCATTACTCGGCAGCCGAAACTGCCTCCAGAATTTTCCATAGCTTCGTTCCAATCTATGCCAATGCTCACTCTGTTTCTCCTCTTCCCTTTTCCTCTCTCCGATCACTTTCAAAATCCTGTTTTCCTCGTCCAATTCGATCTGCAGCTCCTCCTTCTTCATTCCCGGCACATCTAG

Protein sequence

MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGSVSLQLQDGTATLLRNKTLTITIHNSKKIDLSQFLPRPAGLVQLGGRRLFIQNADHSRTLNLLRRKLRQSDLKNPILKLSFNRLQIRITRQPKLPPEFSIASFQSMPMLTLFLLFPFPLSDHFQNPVFLVQFDLQLLLLHSRHI
Homology
[Close]
BLAST of Lsi08G001850.1 vs. TrEMBL
Match: A0A0B2PX14_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_019352 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.9e-16
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1 

Query: 3   KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALT 62
           K   K KN+  C YC KE H++K+C     ++ KKN      E  +      +  ++ L+
Sbjct: 216 KRRSKYKNEKACYYCKKEGHFRKEC----PERKKKNNGKYNDESDIAVVADGYESAEVLS 275

Query: 63  ITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGS 122
           I       S  + S +W+LDSGC +HMT + EWF +YK  DGG V MGN+  C ++GIG+
Sbjct: 276 I-------STKKHSEEWILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMVCNVIGIGT 335

Query: 123 VSLQLQDGTATL 135
           + L++QDG   L
Sbjct: 336 IKLKVQDGFVKL 336

[Close]
BLAST of Lsi08G001850.1 vs. TrEMBL
Match: A0A077SK66_PHAVU (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 6.7e-16
Identity = 50/144 (34.72%), Postives = 82/144 (56.94%), Query Frame = 1 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKN-------KNPKQSEPSLPATES 60
           M+K++ +   K +C +CH++ HWKKDC  L +K+           K+  +S+ SL  + S
Sbjct: 157 MSKSKGRVVAKDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESDISLIVSLS 216

Query: 61  SFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHD 120
           + S+ D                  +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN +
Sbjct: 217 ASSYPD------------------EWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDN 276

Query: 121 SCEIVGIGSVSLQLQDGTATLLRN 138
            C+ VGIGS+ L+  DG+  +LR+
Sbjct: 277 PCKTVGIGSIKLRNHDGSTRILRD 282

[Close]
BLAST of Lsi08G001850.1 vs. TrEMBL
Match: G8DCX4_PHAVU (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-15
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 1 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNK-KNKNPKQSEPSLPATESSFSFSD 60
           M+K++ +   K +C +CH++ HWKKDC  L +K+   ++ N  + +  +   ES  S   
Sbjct: 158 MSKSKGRAVAKDECAFCHEKGHWKKDCPKLQKKEKVLQDANVAECKSDV---ESDISLIV 217

Query: 61  ALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVG 120
           +L         S S    +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN + C+ VG
Sbjct: 218 SL---------SASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVG 277

Query: 121 IGSVSLQLQDGTATLLRN 138
           IGS+ L+  DG+  +LR+
Sbjct: 278 IGSIKLRNHDGSTRILRD 283

[Close]
BLAST of Lsi08G001850.1 vs. TrEMBL
Match: A0A151T3S7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_016214 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 1 

Query: 2   AKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDAL 61
           ++++ KGKNK +C  C KE H+KKDC                     P  ES+    + L
Sbjct: 108 SRSKSKGKNK-RCFICDKEGHFKKDC---------------------PNRESA----EVL 167

Query: 62  TITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIG 121
            +T++D       T  +W+LDSGC +HMT +K+WF TY   DGG V +GN+ +C+++GIG
Sbjct: 168 AVTDQD-------THKEWILDSGCSFHMTPNKDWFETYNQVDGGTVLLGNNKACKVIGIG 210

Query: 122 SVSLQLQDGTATLLRN 138
           SV L++ DG   +L++
Sbjct: 228 SVRLRMFDGMDRVLQD 210

[Close]
BLAST of Lsi08G001850.1 vs. TrEMBL
Match: Q69FA7_PHAVU (Retrovirus-related pol polyprotein (Fragment) OS=Phaseolus vulgaris GN=BA1 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.5e-15
Identity = 49/144 (34.03%), Postives = 80/144 (55.56%), Query Frame = 1 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKN-------KNPKQSEPSLPATES 60
           M K++ +   K +C +CH++ HWKKDC  L +K+           K+  +S+ SL  + S
Sbjct: 197 MCKSKGRVVAKDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESDISLIVSLS 256

Query: 61  SFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHD 120
           + S+ D                  +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN +
Sbjct: 257 ASSYPD------------------EWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDN 316

Query: 121 SCEIVGIGSVSLQLQDGTATLLRN 138
            C+  GIGS+ L+  DG+  +LR+
Sbjct: 317 PCKTAGIGSIKLRNHDGSTRILRD 322

[Close]
BLAST of Lsi08G001850.1 vs. NCBI nr
Match: gi|734354227|gb|KHN13665.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine soja])

HSP 1 Score: 93.6 bits (231), Expect = 5.6e-16
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1 

Query: 3   KTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDALT 62
           K   K KN+  C YC KE H++K+C     ++ KKN      E  +      +  ++ L+
Sbjct: 216 KRRSKYKNEKACYYCKKEGHFRKEC----PERKKKNNGKYNDESDIAVVADGYESAEVLS 275

Query: 63  ITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIGS 122
           I       S  + S +W+LDSGC +HMT + EWF +YK  DGG V MGN+  C ++GIG+
Sbjct: 276 I-------STKKHSEEWILDSGCSFHMTPNLEWFSSYKEIDGGKVLMGNNMVCNVIGIGT 335

Query: 123 VSLQLQDGTATL 135
           + L++QDG   L
Sbjct: 336 IKLKVQDGFVKL 336

[Close]
BLAST of Lsi08G001850.1 vs. NCBI nr
Match: gi|670449696|emb|CDN96898.1| (putative Ty-1 copia retrotransposon [Phaseolus vulgaris])

HSP 1 Score: 92.8 bits (229), Expect = 9.6e-16
Identity = 50/144 (34.72%), Postives = 82/144 (56.94%), Query Frame = 1 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKN-------KNPKQSEPSLPATES 60
           M+K++ +   K +C +CH++ HWKKDC  L +K+           K+  +S+ SL  + S
Sbjct: 157 MSKSKGRVVAKDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESDISLIVSLS 216

Query: 61  SFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHD 120
           + S+ D                  +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN +
Sbjct: 217 ASSYPD------------------EWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDN 276

Query: 121 SCEIVGIGSVSLQLQDGTATLLRN 138
            C+ VGIGS+ L+  DG+  +LR+
Sbjct: 277 PCKTVGIGSIKLRNHDGSTRILRD 282

[Close]
BLAST of Lsi08G001850.1 vs. NCBI nr
Match: gi|353685482|gb|AER13159.1| (putative Ty-1 copia retrotransposon [Phaseolus vulgaris])

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 1 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNK-KNKNPKQSEPSLPATESSFSFSD 60
           M+K++ +   K +C +CH++ HWKKDC  L +K+   ++ N  + +  +   ES  S   
Sbjct: 158 MSKSKGRAVAKDECAFCHEKGHWKKDCPKLQKKEKVLQDANVAECKSDV---ESDISLIV 217

Query: 61  ALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVG 120
           +L         S S    +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN + C+ VG
Sbjct: 218 SL---------SASLYLDEWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVG 277

Query: 121 IGSVSLQLQDGTATLLRN 138
           IGS+ L+  DG+  +LR+
Sbjct: 278 IGSIKLRNHDGSTRILRD 283

[Close]
BLAST of Lsi08G001850.1 vs. NCBI nr
Match: gi|1012350517|gb|KYP61706.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-15
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 1 

Query: 2   AKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKNKNPKQSEPSLPATESSFSFSDAL 61
           ++++ KGKNK +C  C KE H+KKDC                     P  ES+    + L
Sbjct: 108 SRSKSKGKNK-RCFICDKEGHFKKDC---------------------PNRESA----EVL 167

Query: 62  TITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHDSCEIVGIG 121
            +T++D       T  +W+LDSGC +HMT +K+WF TY   DGG V +GN+ +C+++GIG
Sbjct: 168 AVTDQD-------THKEWILDSGCSFHMTPNKDWFETYNQVDGGTVLLGNNKACKVIGIG 210

Query: 122 SVSLQLQDGTATLLRN 138
           SV L++ DG   +L++
Sbjct: 228 SVRLRMFDGMDRVLQD 210

[Close]
BLAST of Lsi08G001850.1 vs. NCBI nr
Match: gi|38194907|gb|AAR13295.1| (retrovirus-related pol polyprotein [Phaseolus vulgaris])

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-15
Identity = 49/144 (34.03%), Postives = 80/144 (55.56%), Query Frame = 1 

Query: 1   MAKTEEKGKNKPKCNYCHKEDHWKKDCWSLNRKQNKKN-------KNPKQSEPSLPATES 60
           M K++ +   K +C +CH++ HWKKDC  L +K+           K+  +S+ SL  + S
Sbjct: 197 MCKSKGRVVAKDECAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESDISLIVSLS 256

Query: 61  SFSFSDALTITERDEESSRSQTSADWVLDSGCFYHMTLDKEWFYTYKSWDGGLVFMGNHD 120
           + S+ D                  +W+LDSGC YHM   ++WF+ ++  DGG+V+MGN +
Sbjct: 257 ASSYPD------------------EWILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDN 316

Query: 121 SCEIVGIGSVSLQLQDGTATLLRN 138
            C+  GIGS+ L+  DG+  +LR+
Sbjct: 317 PCKTAGIGSIKLRNHDGSTRILRD 322

The following BLAST results are available for this feature:
BLAST of Lsi08G001850.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G001850.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0B2PX14_GLYSO3.9e-1637.88Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycin... [more]
A0A077SK66_PHAVU6.7e-1634.72Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1[more]
G8DCX4_PHAVU1.5e-1536.23Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1[more]
A0A151T3S7_CAJCA2.5e-1537.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=... [more]
Q69FA7_PHAVU2.5e-1534.03Retrovirus-related pol polyprotein (Fragment) OS=Phaseolus vulgaris GN=BA1 PE=4 ... [more]
BLAST of Lsi08G001850.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G001850.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|734354227|gb|KHN13665.1|5.6e-1637.88Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Glycine so... [more]
gi|670449696|emb|CDN96898.1|9.6e-1634.72putative Ty-1 copia retrotransposon [Phaseolus vulgaris][more]
gi|353685482|gb|AER13159.1|2.1e-1536.23putative Ty-1 copia retrotransposon [Phaseolus vulgaris][more]
gi|1012350517|gb|KYP61706.1|3.6e-1537.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan][more]
gi|38194907|gb|AAR13295.1|3.6e-1534.03retrovirus-related pol polyprotein [Phaseolus vulgaris][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi08G001850Lsi08G001850gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi08G001850.1.CDS.1Lsi08G001850.1.CDS.1CDS
Lsi08G001850.1.CDS.2Lsi08G001850.1.CDS.2CDS
Lsi08G001850.1.CDS.3Lsi08G001850.1.CDS.3CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi08G001850.1Lsi08G001850.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 7..137
score: 9.8
NoneNo IPR availablePANTHERPTHR11439:SF192SUBFAMILY NOT NAMEDcoord: 7..137
score: 9.8