Cucsa.074380.1 (mRNA) Cucumber (Gy14) v1
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCACATTCTTCTTCTGATCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCACTTTTCCCTCATAAATATCCCCCCATTCCACTCCCACTCCTCTTCAATTCAAACTCAGGCCCTAATTCCTAATTCTATCTCACCACCTCACTTCAATGGCATTTTCCGCTGAGAAATCAGGATTCGAGGACTGGCTGCCCACGATGGCAGAGAGGCTGGGCGGGGAGGGCCTCATCGGGGAGCTGTGCAATGGATTCAATCTTCTGATGAATAGAGAGAAGGGAGTGATTGATTTCGAGAGCCTGAAGAGGAACGCTGCGGCGCTAGGGCTGGGGGATCTAAGCGATGAGGATCTGAGATCAATGTTGAGAGAaGGGGATTTTGATGGTGATGGTGCTCTTAATCAGATGGAGTTTTGTGTTCTTATGTTTAGATTGAGCCCTGAATTGATGGAAGAATCGTGGTTCTTGCTTGAGGAAGCTCTACATCAAGAATTCAAGGATTTTTGTTGATTTCCTTTTCTTTCTTTTCTTTTCTATTAATTACTGATTTTTCTTAACTCACTGATCTTTTACTTGGAAATTAAATTAAAATAAATTGATACTTTTTACTAACCAA TCACAttcttcttctgatcttctttttcttcttcttcttcttcttcttcttcACTTTTCCCTCATAAATATCCCCCCATTCCACTCCCACTCCTCTTCAATTCAAACTCAGGCCCTAATTCCTAATTCTATCTCACCACCTCACTTCAATGGCATTTTCCGCTGAGAAATCAGGATTCGAGGACTGGCTGCCCACGATGGCAGAGAGGCTGGGCGGGGAGGGCCTCATCGGGGAGCTGTGCAATGGATTCAATCTTCTGATGAATAGAGAGAAGGGAGTGATTGATTTCGAGAGCCTGAAGAGGAACGCTGCGGCGCTAGGGCTGGGGGATCTAAGCGATGAGGATCTGAGATCAATGTTGAGAGAAGGGGATTTTGATGGTGATGGTGCTCTTAATCAGATGGAGTTTTGTGTTCTTATGTTTAGATTGAGCCCTGAATTGATGGAAGAATCGTGGTTCTTGCTTGAGGAAGCTCTACATCAAGAATTCAAGGATTTTTGTTGATTTCCTTTTCTTTCTTTTCTTTTCTATTAATTACTGATTTTTCTTAACTCACTGATCTTTTACTTGGAAATTAAATTAAAATAAATTGATACTTTTTACTAACCAA ATGGCATTTTCCGCTGAGAAATCAGGATTCGAGGACTGGCTGCCCACGATGGCAGAGAGGCTGGGCGGGGAGGGCCTCATCGGGGAGCTGTGCAATGGATTCAATCTTCTGATGAATAGAGAGAAGGGAGTGATTGATTTCGAGAGCCTGAAGAGGAACGCTGCGGCGCTAGGGCTGGGGGATCTAAGCGATGAGGATCTGAGATCAATGTTGAGAGAaGGGGATTTTGATGGTGATGGTGCTCTTAATCAGATGGAGTTTTGTGTTCTTATGTTTAGATTGAGCCCTGAATTGATGGAAGAATCGTGGTTCTTGCTTGAGGAAGCTCTACATCAAGAATTCAAGGATTTTTGTTGA MAFSAEKSGFEDWLPTMAERLGGEGLIGELCNGFNLLMNREKGVIDFESLKRNAAALGLGDLSDEDLRSMLREGDFDGDGALNQMEFCVLMFRLSPELMEESWFLLEEALHQEFKDFC*
BLAST of Cucsa.074380.1 vs. Swiss-Prot
Match: PBP1_ARATH (Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 4.1e-35 Identity = 72/106 (67.92%), Postives = 89/106 (83.96%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. Swiss-Prot
Match: KIC_ARATH (Calcium-binding protein KIC OS=Arabidopsis thaliana GN=KIC PE=1 SV=2) HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26 Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 2.3e-09 Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 5.1e-09 Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.5e-08 Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. TrEMBL
Match: A0A0A0L347_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099590 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 1.8e-61 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. TrEMBL
Match: A0A0A0L2H0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G081900 PE=4 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 6.8e-45 Identity = 90/110 (81.82%), Postives = 100/110 (90.91%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. TrEMBL
Match: B9I051_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s13280g PE=4 SV=2) HSP 1 Score: 185.7 bits (470), Expect = 3.4e-44 Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. TrEMBL
Match: A9PD88_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43 Identity = 90/113 (79.65%), Postives = 101/113 (89.38%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. TrEMBL
Match: U5GTT3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s42270g PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 1.3e-43 Identity = 90/113 (79.65%), Postives = 101/113 (89.38%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. TAIR10
Match: AT4G27280.1 (AT4G27280.1 Calcium-binding EF-hand family protein) HSP 1 Score: 161.8 bits (408), Expect = 2.7e-40 Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. TAIR10
Match: AT5G54490.1 (AT5G54490.1 pinoid-binding protein 1) HSP 1 Score: 148.7 bits (374), Expect = 2.3e-36 Identity = 72/106 (67.92%), Postives = 89/106 (83.96%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. TAIR10
Match: AT2G46600.1 (AT2G46600.1 Calcium-binding EF-hand family protein) HSP 1 Score: 120.2 bits (300), Expect = 8.8e-28 Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. NCBI nr
Match: gi|449463164|ref|XP_004149304.1| (PREDICTED: calcium-binding protein PBP1 [Cucumis sativus]) HSP 1 Score: 243.0 bits (619), Expect = 2.6e-61 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. NCBI nr
Match: gi|659102784|ref|XP_008452312.1| (PREDICTED: calcium-binding protein PBP1 [Cucumis melo]) HSP 1 Score: 237.7 bits (605), Expect = 1.1e-59 Identity = 115/118 (97.46%), Postives = 117/118 (99.15%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. NCBI nr
Match: gi|449470409|ref|XP_004152909.1| (PREDICTED: calcium-binding protein PBP1 [Cucumis sativus]) HSP 1 Score: 188.0 bits (476), Expect = 9.8e-45 Identity = 90/110 (81.82%), Postives = 100/110 (90.91%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. NCBI nr
Match: gi|743860682|ref|XP_011030921.1| (PREDICTED: calcium-binding protein PBP1-like [Populus euphratica]) HSP 1 Score: 186.0 bits (471), Expect = 3.7e-44 Identity = 91/114 (79.82%), Postives = 101/114 (88.60%), Query Frame = 1
BLAST of Cucsa.074380.1 vs. NCBI nr
Match: gi|566195260|ref|XP_002316949.2| (hypothetical protein POPTR_0011s13280g [Populus trichocarpa]) HSP 1 Score: 185.7 bits (470), Expect = 4.9e-44 Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
|