CsaV3_UNG146130.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTACTTCTACTCTTTTCAAGTTATTGATTGGTGTTTGTTTTCTCGTGCTTCTTCACGGCCTTCCTGCCTCCGCGCAGCTTTTCGTCGTCAATGGTTGTGTCTACTGCGACACTTGTCGGTGTGGTTTCGAGACAAACGTCTCCACTCCCATTTCTGGTAATGCTTCTTTTATGTCTCTGTTTGTAATGCTTCTTTTATATTTCTGTTTGTAATGCTTCTCTTTTATAACAAGTAATGAAATGGACGATTGTTTTACTAGAAAATTAATCAATGAAATGAAACAGGTGCAAAAGTGAGGTTGGAGTGTAGAGATAGAGCCACATGGGTGTTGAAGTTCACCAAAGAAGCTATTACCGATTCTAAAGGAAAATACAAAATCAATGTGTATGAAGACCACAAGGATGAGAGTTGTAAGGTAGTTCTTGTGAGTAGTCCTCATCTTGGGTGCAACCGTCCCGATGTAGGTCGAAACAGTGCTACTGTCATTCTCACCAACAACAATGGCCTCACTAGCATCTTCCGCTATGCAAATGCAATGGGCTTCCTGATCCGACGTCCTCTTGCTTTCTGCCCCACAATTCTCAAACAATATCTCGACTTCGATGAGTCGTTGTGA ATGCCTACTTCTACTCTTTTCAAGTTATTGATTGGTGTTTGTTTTCTCGTGCTTCTTCACGGCCTTCCTGCCTCCGCGCAGCTTTTCGTCGTCAATGGTTGTGTCTACTGCGACACTTGTCGGTGTGGTTTCGAGACAAACGTCTCCACTCCCATTTCTGGTGCAAAAGTGAGGTTGGAGTGTAGAGATAGAGCCACATGGGTGTTGAAGTTCACCAAAGAAGCTATTACCGATTCTAAAGGAAAATACAAAATCAATGTGTATGAAGACCACAAGGATGAGAGTTGTAAGGTAGTTCTTGTGAGTAGTCCTCATCTTGGGTGCAACCGTCCCGATGTAGGTCGAAACAGTGCTACTGTCATTCTCACCAACAACAATGGCCTCACTAGCATCTTCCGCTATGCAAATGCAATGGGCTTCCTGATCCGACGTCCTCTTGCTTTCTGCCCCACAATTCTCAAACAATATCTCGACTTCGATGAGTCGTTGTGA ATGCCTACTTCTACTCTTTTCAAGTTATTGATTGGTGTTTGTTTTCTCGTGCTTCTTCACGGCCTTCCTGCCTCCGCGCAGCTTTTCGTCGTCAATGGTTGTGTCTACTGCGACACTTGTCGGTGTGGTTTCGAGACAAACGTCTCCACTCCCATTTCTGGTGCAAAAGTGAGGTTGGAGTGTAGAGATAGAGCCACATGGGTGTTGAAGTTCACCAAAGAAGCTATTACCGATTCTAAAGGAAAATACAAAATCAATGTGTATGAAGACCACAAGGATGAGAGTTGTAAGGTAGTTCTTGTGAGTAGTCCTCATCTTGGGTGCAACCGTCCCGATGTAGGTCGAAACAGTGCTACTGTCATTCTCACCAACAACAATGGCCTCACTAGCATCTTCCGCTATGCAAATGCAATGGGCTTCCTGATCCGACGTCCTCTTGCTTTCTGCCCCACAATTCTCAAACAATATCTCGACTTCGATGAGTCGTTGTGA MPTSTLFKLLIGVCFLVLLHGLPASAQLFVVNGCVYCDTCRCGFETNVSTPISGAKVRLECRDRATWVLKFTKEAITDSKGKYKINVYEDHKDESCKVVLVSSPHLGCNRPDVGRNSATVILTNNNGLTSIFRYANAMGFLIRRPLAFCPTILKQYLDFDESL
BLAST of CsaV3_UNG146130.1 vs. NCBI nr
Match: XP_011653120.1 (PREDICTED: major pollen allergen Lol p 11-like [Cucumis sativus] >KGN53218.1 hypothetical protein Csa_4G028420 [Cucumis sativus]) HSP 1 Score: 338.6 bits (867), Expect = 1.2e-89 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. NCBI nr
Match: XP_008453801.1 (PREDICTED: major pollen allergen Lol p 11-like [Cucumis melo]) HSP 1 Score: 319.7 bits (818), Expect = 5.8e-84 Identity = 153/163 (93.87%), Postives = 158/163 (96.93%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. NCBI nr
Match: XP_022941733.1 (protein DOWNSTREAM OF FLC-like [Cucurbita moschata]) HSP 1 Score: 245.4 bits (625), Expect = 1.4e-61 Identity = 118/160 (73.75%), Postives = 135/160 (84.38%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. NCBI nr
Match: XP_023525170.1 (protein DOWNSTREAM OF FLC-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 244.6 bits (623), Expect = 2.4e-61 Identity = 118/163 (72.39%), Postives = 135/163 (82.82%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. NCBI nr
Match: XP_022136800.1 (protein DOWNSTREAM OF FLC [Momordica charantia]) HSP 1 Score: 243.0 bits (619), Expect = 6.9e-61 Identity = 119/165 (72.12%), Postives = 134/165 (81.21%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TAIR10
Match: AT4G08685.1 (Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 130.6 bits (327), Expect = 9.0e-31 Identity = 73/154 (47.40%), Postives = 91/154 (59.09%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TAIR10
Match: AT5G10130.1 (Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 125.9 bits (315), Expect = 2.2e-29 Identity = 68/149 (45.64%), Postives = 85/149 (57.05%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TAIR10
Match: AT5G45880.1 (Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 120.9 bits (302), Expect = 7.2e-28 Identity = 62/133 (46.62%), Postives = 83/133 (62.41%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TAIR10
Match: AT1G29140.1 (Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 119.4 bits (298), Expect = 2.1e-27 Identity = 64/154 (41.56%), Postives = 91/154 (59.09%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TAIR10
Match: AT4G18596.1 (Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 117.1 bits (292), Expect = 1.0e-26 Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. Swiss-Prot
Match: sp|Q9LX15|DFC_ARATH (Protein DOWNSTREAM OF FLC OS=Arabidopsis thaliana OX=3702 GN=DFC PE=2 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 4.0e-28 Identity = 68/149 (45.64%), Postives = 85/149 (57.05%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. Swiss-Prot
Match: sp|Q8LGR0|CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album OX=3559 PE=1 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 8.4e-26 Identity = 65/153 (42.48%), Postives = 88/153 (57.52%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. Swiss-Prot
Match: sp|P33050|PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays OX=4577 GN=MGS1 PE=2 SV=1) HSP 1 Score: 118.2 bits (295), Expect = 8.4e-26 Identity = 59/133 (44.36%), Postives = 84/133 (63.16%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. Swiss-Prot
Match: sp|Q6NMJ2|OLE96_ARATH (Pollen-specific protein-like At4g18596 OS=Arabidopsis thaliana OX=3702 GN=At4g18596 PE=2 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 1.9e-25 Identity = 60/133 (45.11%), Postives = 82/133 (61.65%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. Swiss-Prot
Match: sp|Q8H6L7|PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense OX=15957 PE=1 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 4.6e-24 Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TrEMBL
Match: tr|A0A0A0KUJ2|A0A0A0KUJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G028420 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 8.0e-90 Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TrEMBL
Match: tr|A0A1S3BYB8|A0A1S3BYB8_CUCME (major pollen allergen Lol p 11-like OS=Cucumis melo OX=3656 GN=LOC103494419 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 3.8e-84 Identity = 153/163 (93.87%), Postives = 158/163 (96.93%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TrEMBL
Match: tr|A0A2J6LRI4|A0A2J6LRI4_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X42161 PE=4 SV=1) HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36 Identity = 76/147 (51.70%), Postives = 102/147 (69.39%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TrEMBL
Match: tr|A0A2G9IAI4|A0A2G9IAI4_9LAMI (Uncharacterized protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_00468 PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 3.9e-36 Identity = 78/153 (50.98%), Postives = 104/153 (67.97%), Query Frame = 0
BLAST of CsaV3_UNG146130.1 vs. TrEMBL
Match: tr|A9PHV1|A9PHV1_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G167900v3 PE=2 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 5.1e-36 Identity = 79/154 (51.30%), Postives = 104/154 (67.53%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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