CsaV3_7G003560.1 (mRNA) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G003560.1
TypemRNA
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7 : 2654436 .. 2655839 (-)
Sequence length200
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTGAGCGTTTCATCATCTCCCTTTTACCTTATTGACTCCATGCTTGGCTTGGCATATTTTTGACGAAGTATTCTTAAATTGTTTAACATAGGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGTAAATGACCAACCTTCGTTTTTCTGATTGTAAAGTTTGTTTTTAAAATTGTAGTAGCACTATGAGGGTGAGGATCAGAAATTAGAATCACAGATCTCTCGGTTAGGCTAACACGTCAGTTGTGCTAATTTGATTGTTTAAGTTAAATATTTGATTTGGTCTTTTAAACCTTTTGAAAATTTAAAAACTTGGATGTATTATATTTTAAATGAAGACATTCCAGAAATAAGTTTGCTAAAATTTATTAACTTAAAGTAATTGTGTAGTTGAATTTTTGTTTTAGTAACATACTTAGACATGCCTCTTGGTAGAAATGTGTTTTTCCCCTTTCTTGCTTAGGCGGGTGGTGTTCTATACGTCAGGTAGAATTTATATGGCAAGCTTTAGTAATTCAATGATACACCAAATTTGTTTTGACAAATGTTAACCAATTTCTTAATGGAAAGGACCTAATGCAGAATTCTGTATACATTGGAGGTTATACTGAGATCAAATTGAGAATTATCTAAAAGATTAAAATACCTGGTTTATATCTAGCCGACGGATATAAAAAAAATCTATTTAAGAGTTCAGATATCAACATCTTCTTAAGACCCTTTGGGGTAAGGGCTAATATAGGGCCAGTATTGTTTCTTATATTGACAATATTTTTAACTATTAATTCAATTGTTTTTTTTATAAAGAAATGTGAAATTCACAATGGAGAAATTAGGAGAAGTGAATTGCATTTTTCAATTATAAATTTTGGTTAGAATTTTAATCACACTTAGAAATAGATTTTATTTTTGTTTACTATCAAAGTGAAAATGTGAACTTTTAACTTTTGGTAGACTTAACAAGTTTGCCTTGAAAGATGAACTAGATTAAAAAGAGATGGTTGGTAGATGCGTTGAACTGAACTTTGAAATAAAAGAGTAATATCCATCTTAGGTAGAAACTATACCTAATCAGGTAACATTGTGTAACATCTAAATTAGTAAATAATATCATTAGCCTGACATCAAGGATGCTTTGTTAAGACAATATTGTCTTAGCCATTGGGAGAAAAAGACAGTCTAACAAATAGTCTTTTAATGGTGGAATTTTACTATGGCTTCTATCTAATAATGGCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

mRNA sequence

ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

Coding sequence (CDS)

ATGGTCTGTATTATAAGATTAAGATGGCGGCCTTGTCTTTGTCCCCATCTTGTTAGGGGATATAATTTGCAAAGGAGTGAAATTTCAGTAGAGCTTAAGCTACCATTTAAATGGAATTCACGACTAAAGTCACTTCCAGAGTTCCAGGGACCAGCAATTCAATTGAACTTATGTGGGAGCAACATCTTAACAATCATCAG

Protein sequence

MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGSNILTIIX
Homology
[Close]
BLAST of CsaV3_7G003560.1 vs. NCBI nr
Match: KGN58671.1 (hypothetical protein Csa_3G727890 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
          MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 19 MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 78

Query: 61 NILTII 67
          NILTII
Sbjct: 79 NILTII 84

[Close]
BLAST of CsaV3_7G003560.1 vs. NCBI nr
Match: XP_011651826.1 (PREDICTED: uncharacterized protein LOC105434945 isoform X1 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1   MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
           MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 54  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 113

Query: 61  NILTII 67
           NILTII
Sbjct: 114 NILTII 119

[Close]
BLAST of CsaV3_7G003560.1 vs. NCBI nr
Match: XP_011651827.1 (PREDICTED: uncharacterized protein LOC105434945 isoform X2 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 6.7e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
          MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 23 MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 82

Query: 61 NILTII 67
          NILTII
Sbjct: 83 NILTII 88

[Close]
BLAST of CsaV3_7G003560.1 vs. TrEMBL
Match: tr|A0A0A0LF24|A0A0A0LF24_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727890 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.5e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 60
          MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS
Sbjct: 19 MVCIIRLRWRPCLCPHLVRGYNLQRSEISVELKLPFKWNSRLKSLPEFQGPAIQLNLCGS 78

Query: 61 NILTII 67
          NILTII
Sbjct: 79 NILTII 84

The following BLAST results are available for this feature:
BLAST of CsaV3_7G003560.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN58671.16.7e-31100.00hypothetical protein Csa_3G727890 [Cucumis sativus][more]
XP_011651826.16.7e-31100.00PREDICTED: uncharacterized protein LOC105434945 isoform X1 [Cucumis sativus][more]
XP_011651827.16.7e-31100.00PREDICTED: uncharacterized protein LOC105434945 isoform X2 [Cucumis sativus][more]
BLAST of CsaV3_7G003560.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G003560.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G003560.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LF24|A0A0A0LF24_CUCSA4.5e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727890 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsaV3_7G003560CsaV3_7G003560gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsaV3_7G003560.1CsaV3_7G003560.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G003560.1.cds3CsaV3_7G003560.1.cds3CDS
CsaV3_7G003560.1.cds2CsaV3_7G003560.1.cds2CDS
CsaV3_7G003560.1.cds1CsaV3_7G003560.1.cds1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsaV3_7G003560.1.exon3CsaV3_7G003560.1.exon3exon
CsaV3_7G003560.1.exon2CsaV3_7G003560.1.exon2exon
CsaV3_7G003560.1.exon1CsaV3_7G003560.1.exon1exon