CsaV3_6G000910.1 (mRNA) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.GTTTTTGTTATGTGTCATAAAAGTTTCACCGCCACGTGGAAGGTCTCAAGCGTAAACAGCCGTCGTAGTTTGACACTCTGGCCTGGCCACGTACTGTAGAATTGCCACCTCGTTCATCCATTTATATAATAATTAAATTTCTTCACTTACTTTCTATTGCACTATCCATGGCGGACTCTTCAGAAACTGTACAACCCAAGGCGGTGGAAATCGCCGACGATAATATTAACAATGATCAACACCCCATTACTCCATCTCCCCCGCCATCCTCTAATTTCAACAAAATGGACCATTCTCTGCCACTTTCGCCGGAGGACGAGACGGCAGAGAGTTCTCAAATGTTAGAGAAAAAGCAACCTGTTCATCGTGTTCTTGGTGCTGGAAAGCGTACGGCTAATCCCTCTTTGTGTTTTTCCAATTCTTGTATTTTTTTTTTCATCTCTAAAAATGAGTGAAAATGTTTACAAAGTAGAACCAACTTTTATATTCTATGTTTATATTTCATACATAAATTATGATATTTTTTGAAATTATTGTTTTATTAACATACATCATCTTATGTATATATATATACGTATGGAACTCGAATTTTTGTTGGTGCATCATATACTGTTATGCATTTAATTTTATTATGCTTGTTCAGTTGGTGACATTTGGTCTTTTTCTTTTTGTTTTGGAATTATGTTAGTACTTCCATAAGTTTTGTTCAATAGTTTCATCTTGTAACATTGCAAATTCAAAACGACCCTAAGTGCTTATTTTTATCCAAACCAATAAATATTGGAGGCAGCATCGAATGAGGTCGTGCATGTTGATTAACATTTGGCATTATGTAATGATCTTGTTTTTGGTAGTTGCTGACGGGTTGTTATGGCGGGACAAGAAGGTGTCGGTTGCGGTTGTTGGTGGAGCAACGATAGTTTGGGCGTTTTTTGAATTGCTTGAATATCATTTGCTTCCAATCTTATGTTATGCGTTGATCGTGGTTGTTGCTCTCTTGTTCCTTTGGTCCAATGCTCATATACTCATCTACAAGTACGTTTCAATACCTAAAATCTCTCACTTTCATTAAGTATGATGGTAGTGTATGCTTGAACCTAGCTCTTACAAAAAAAATTGAGTGCATTAATAGGAGCCCTCCTCATCTTCCGGAAGTTCGTATTAGGGAGGAACCATTTCTACAGGTAGCTTCTGCAGTAAGGACCGAGATCAATCGGGCCATTGCGATCTTGCGTGATGTTGCATCTGGGAGAGATGTGAAGAAGTTTATTGCTGTAAGTGCTGTTAAAATAAACTGCCCAATGCACTAATTGCCTTCAATACTATATGAACTTTTTAACTTTAGAGCCTACTTAATTAGATTGAACTGCATAATCTTGTTTTTTTATTAATTTTTTGATCCAATGAATGAAATAGCTCCATTCATTTGATATGTTCAGATTATTTGTTTTAATTTTCTCTACAACATTTGTTGTACTTATTATAAGTTCATAGAAATCAATCCTAACCTTAATTAACAACCTACGTGATCATGTTTATGTTTATTTATAAGAGCAATGACGAGGCAAAAAAAGCACCATATGATGGGCTATGCAGCCCAGTTGTAACCAAGTATTCTCATATATTCTAATAGTGTTGAGTTTTACAATGTCAGGTGGTTGTTGGCTTGTGGTTCCTATCAGTAGTAGGAAATTGGTGCAATTTTTTGACCTTGTTTTACATAGGTAAGATTTACTTTCACAATACACCTCGAAACTCCCTGACCATTTCGACATTACTCAATTTTTTTCTTCTTTTTTTACAGTTGTGGTACTGCTGCACATGGTACCGGTCTTTTACGAGAAGTACAAGTACAAAATCGACTCATTTGCGGAAAAGATCGTGGCCGAGATTAGAAAGAAGTATACAGTTTTTAACGAGAAAGTGGCGAGTAAATTTTCCAAAGAACCATTAAGAGACAAGAAGGATTGAAAGAAAGGGAGGAAAAGAGTATAATGTGTGTTCTCTTTTGGACTTGAAAGTCTTCATTTTCGTTCTGGTTAATGTTGTGTAAATGTTTTGATTTGAAGTTCAAACCAAAGCTTATATGTGTCCTTGTACATATCAAACTTTTAGTGTAAGGTTACTTCTTTTCTTGAATTTGATTCGGTAGATGGATTTTGAATAGTGTGGTGAATTGATGTGGTTGTATTATGTGGTGATCGTTGAGACTTGTATGTGACAAAATTGACTAGGGAATGAATGTGAATGGGTATACTTCTGCC ATGGCGGACTCTTCAGAAACTGTACAACCCAAGGCGGTGGAAATCGCCGACGATAATATTAACAATGATCAACACCCCATTACTCCATCTCCCCCGCCATCCTCTAATTTCAACAAAATGGACCATTCTCTGCCACTTTCGCCGGAGGACGAGACGGCAGAGAGTTCTCAAATGTTAGAGAAAAAGCAACCTGTTCATCGTGTTCTTGGTGCTGGAAAGCTTGCTGACGGGTTGTTATGGCGGGACAAGAAGGTGTCGGTTGCGGTTGTTGGTGGAGCAACGATAGTTTGGGCGTTTTTTGAATTGCTTGAATATCATTTGCTTCCAATCTTATGTTATGCGTTGATCGTGGTTGTTGCTCTCTTGTTCCTTTGGTCCAATGCTCATATACTCATCTACAAGAGCCCTCCTCATCTTCCGGAAGTTCGTATTAGGGAGGAACCATTTCTACAGGTAGCTTCTGCAGTAAGGACCGAGATCAATCGGGCCATTGCGATCTTGCGTGATGTTGCATCTGGGAGAGATGTGAAGAAGTTTATTGCTGTGGTTGTTGGCTTGTGGTTCCTATCAGTAGTAGGAAATTGGTGCAATTTTTTGACCTTGTTTTACATAGTTGTGGTACTGCTGCACATGGTACCGGTCTTTTACGAGAAGTACAAGTACAAAATCGACTCATTTGCGGAAAAGATCGTGGCCGAGATTAGAAAGAAGTATACAGTTTTTAACGAGAAAGTGGCGAGTAAATTTTCCAAAGAACCATTAAGAGACAAGAAGGATTGA ATGGCGGACTCTTCAGAAACTGTACAACCCAAGGCGGTGGAAATCGCCGACGATAATATTAACAATGATCAACACCCCATTACTCCATCTCCCCCGCCATCCTCTAATTTCAACAAAATGGACCATTCTCTGCCACTTTCGCCGGAGGACGAGACGGCAGAGAGTTCTCAAATGTTAGAGAAAAAGCAACCTGTTCATCGTGTTCTTGGTGCTGGAAAGCTTGCTGACGGGTTGTTATGGCGGGACAAGAAGGTGTCGGTTGCGGTTGTTGGTGGAGCAACGATAGTTTGGGCGTTTTTTGAATTGCTTGAATATCATTTGCTTCCAATCTTATGTTATGCGTTGATCGTGGTTGTTGCTCTCTTGTTCCTTTGGTCCAATGCTCATATACTCATCTACAAGAGCCCTCCTCATCTTCCGGAAGTTCGTATTAGGGAGGAACCATTTCTACAGGTAGCTTCTGCAGTAAGGACCGAGATCAATCGGGCCATTGCGATCTTGCGTGATGTTGCATCTGGGAGAGATGTGAAGAAGTTTATTGCTGTGGTTGTTGGCTTGTGGTTCCTATCAGTAGTAGGAAATTGGTGCAATTTTTTGACCTTGTTTTACATAGTTGTGGTACTGCTGCACATGGTACCGGTCTTTTACGAGAAGTACAAGTACAAAATCGACTCATTTGCGGAAAAGATCGTGGCCGAGATTAGAAAGAAGTATACAGTTTTTAACGAGAAAGTGGCGAGTAAATTTTCCAAAGAACCATTAAGAGACAAGAAGGATTGA MADSSETVQPKAVEIADDNINNDQHPITPSPPPSSNFNKMDHSLPLSPEDETAESSQMLEKKQPVHRVLGAGKLADGLLWRDKKVSVAVVGGATIVWAFFELLEYHLLPILCYALIVVVALLFLWSNAHILIYKSPPHLPEVRIREEPFLQVASAVRTEINRAIAILRDVASGRDVKKFIAVVVGLWFLSVVGNWCNFLTLFYIVVVLLHMVPVFYEKYKYKIDSFAEKIVAEIRKKYTVFNEKVASKFSKEPLRDKKD
BLAST of CsaV3_6G000910.1 vs. NCBI nr
Match: KGN45697.1 (hypothetical protein Csa_6G006830 [Cucumis sativus]) HSP 1 Score: 496.9 bits (1278), Expect = 4.2e-137 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. NCBI nr
Match: XP_008458672.1 (PREDICTED: reticulon-like protein B2 [Cucumis melo]) HSP 1 Score: 428.7 bits (1101), Expect = 1.4e-116 Identity = 228/259 (88.03%), Postives = 237/259 (91.51%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. NCBI nr
Match: XP_011656361.1 (PREDICTED: reticulon-like protein B2 [Cucumis sativus]) HSP 1 Score: 422.2 bits (1084), Expect = 1.3e-114 Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. NCBI nr
Match: XP_023514697.1 (reticulon-like protein B1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 316.6 bits (810), Expect = 7.8e-83 Identity = 170/261 (65.13%), Postives = 205/261 (78.54%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. NCBI nr
Match: XP_022964049.1 (reticulon-like protein B1 [Cucurbita moschata]) HSP 1 Score: 314.3 bits (804), Expect = 3.9e-82 Identity = 164/251 (65.34%), Postives = 201/251 (80.08%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TAIR10
Match: AT4G11220.1 (VIRB2-interacting protein 2) HSP 1 Score: 233.4 bits (594), Expect = 1.6e-61 Identity = 113/202 (55.94%), Postives = 157/202 (77.72%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TAIR10
Match: AT2G46170.1 (Reticulon family protein) HSP 1 Score: 227.6 bits (579), Expect = 8.6e-60 Identity = 118/217 (54.38%), Postives = 157/217 (72.35%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TAIR10
Match: AT4G23630.1 (VIRB2-interacting protein 1) HSP 1 Score: 221.9 bits (564), Expect = 4.7e-58 Identity = 111/202 (54.95%), Postives = 151/202 (74.75%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TAIR10
Match: AT5G41600.1 (VIRB2-interacting protein 3) HSP 1 Score: 214.2 bits (544), Expect = 9.8e-56 Identity = 111/207 (53.62%), Postives = 145/207 (70.05%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TAIR10
Match: AT1G64090.2 (Reticulan like protein B3) HSP 1 Score: 196.8 bits (499), Expect = 1.6e-50 Identity = 108/214 (50.47%), Postives = 143/214 (66.82%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. Swiss-Prot
Match: sp|Q9SUT9|RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 2.8e-60 Identity = 113/202 (55.94%), Postives = 157/202 (77.72%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. Swiss-Prot
Match: sp|O82352|RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana OX=3702 GN=RTNLB5 PE=1 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 1.6e-58 Identity = 118/217 (54.38%), Postives = 157/217 (72.35%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. Swiss-Prot
Match: sp|Q9SUR3|RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 8.5e-57 Identity = 111/202 (54.95%), Postives = 151/202 (74.75%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. Swiss-Prot
Match: sp|Q6DBN4|RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana OX=3702 GN=RTNLB6 PE=1 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 2.7e-55 Identity = 111/211 (52.61%), Postives = 150/211 (71.09%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. Swiss-Prot
Match: sp|Q9FFS0|RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1) HSP 1 Score: 214.2 bits (544), Expect = 1.8e-54 Identity = 111/207 (53.62%), Postives = 145/207 (70.05%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TrEMBL
Match: tr|A0A0A0KBC8|A0A0A0KBC8_CUCSA (Reticulon-like protein OS=Cucumis sativus OX=3659 GN=Csa_6G006830 PE=4 SV=1) HSP 1 Score: 496.9 bits (1278), Expect = 2.8e-137 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TrEMBL
Match: tr|A0A1S3C9M8|A0A1S3C9M8_CUCME (Reticulon-like protein OS=Cucumis melo OX=3656 GN=LOC103498001 PE=4 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 9.3e-117 Identity = 228/259 (88.03%), Postives = 237/259 (91.51%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TrEMBL
Match: tr|A0A068UJX6|A0A068UJX6_COFCA (Reticulon-like protein OS=Coffea canephora OX=49390 GN=GSCOC_T00027827001 PE=4 SV=1) HSP 1 Score: 264.6 bits (675), Expect = 2.3e-67 Identity = 130/202 (64.36%), Postives = 166/202 (82.18%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TrEMBL
Match: tr|A0A200R2I2|A0A200R2I2_9MAGN (Reticulon-like protein OS=Macleaya cordata OX=56857 GN=BVC80_737g6 PE=4 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 9.7e-66 Identity = 127/212 (59.91%), Postives = 167/212 (78.77%), Query Frame = 0
BLAST of CsaV3_6G000910.1 vs. TrEMBL
Match: tr|B9RCJ7|B9RCJ7_RICCO (Reticulon-like protein OS=Ricinus communis OX=3988 GN=RCOM_1689400 PE=4 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 9.7e-66 Identity = 128/202 (63.37%), Postives = 160/202 (79.21%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
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