Csa6G091290.1 (mRNA) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTGTACGTAGCCCTAGGCGCTTCAAAAACCAAAGGCTGAGATTTATTTATAAAGAGATCAAACGGTCCACAATTCACAGCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTAAACTCCAGATTTCCCTTTTTTCGTTTCGTATTTGGATCCAACTAATTTCAGTTTCTTCTTTCAATCAGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGTATGTCAATTAGTGTGAACCCTTTTACCTTTTGTTTAATCTAATATTTTCTTCCATGATGGTGATTGAACTGTTATGTGAATTCCAAATGCAGGACGTGAAATGCCAGGGTTGCTTTAACATGTAAGATTTCGTTTTTTTTTCCCATCAATTATGTCTACTTCAGTGTGAATATATGTTTTTTTTTTCATAAAATGAATGATGATATAAGATTATTTGAATGATGAACAGAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAATTCTTTGCCTCAGAATTGGTTTGTAGTAGGATAAGGATGGGTGGGTTTGAATTTTGATATTGCAATTGAGCATATTTTGTCTTTGTCCTCGGGTTTTCTTTATCTACATTTTGGATGTTGATTATTCAATTTTGCTTGAGAAAGAAAGAGCATTTTGGCACCCCTGTTCCAGTACAATGCAACTAAGTTAAGTTTTGTTTGAAGTAATTTACATCGAACTATTTTGATTTGCTTGCCATTATTTGCAATAGTTGTAAAATTAAATCGCATTTTCTGCTTCTTTTAGTGTTTGAAATGAAATATTGAATTGTTCTTGGTGTGCGATAGCTCAAG ATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA ATGGACGGTTATACCCTCTGCCTGATGGAAGGGTGTCCGCTCCTTTATATTCATCCTAGACGGCGCTCTTCTCCTCTTTCTTCACCTTCATCGCACCGCTCCGCCTTCGTTCTCTCGCGAACTGTCGTTGGAGTTTTAGGGTTTGCGATCCACACAGCTCCCCTTCCTTTGATCATCATGGTTCTTCAAAACGACATCGATTTGCTCAACCCCCCCGCCGAGCTTGAGAAGAGAAAGCACAAGCTCAAGCGTCTCGTACAATCGCCCAACTCATTCTTCATGGACGTGAAATGCCAGGGTTGCTTTAACATAACCACTGTATTCAGTCATTCACAAACAGTTGTGGTATGTGGGAATTGCCAGACGGTCTTGTGCCAGCCAACTGGGGGGCGAGCTAAGCTAACAGAAGGGTGCTCCTTTAGAAGAAAGGGCGATTAA MDGYTLCLMEGCPLLYIHPRRRSSPLSSPSSHRSAFVLSRTVVGVLGFAIHTAPLPLIIMVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRAKLTEGCSFRRKGD*
BLAST of Csa6G091290.1 vs. Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2) HSP 1 Score: 181.4 bits (459), Expect = 7.0e-45 Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1
BLAST of Csa6G091290.1 vs. Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=3 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 7.3e-42 Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1
BLAST of Csa6G091290.1 vs. Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2) HSP 1 Score: 170.2 bits (430), Expect = 1.6e-41 Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 1
BLAST of Csa6G091290.1 vs. Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=2 SV=2) HSP 1 Score: 168.7 bits (426), Expect = 4.7e-41 Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1
BLAST of Csa6G091290.1 vs. Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 9.2e-37 Identity = 72/86 (83.72%), Postives = 75/86 (87.21%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TrEMBL
Match: A0A0A0K9G0_CUCSA (40S ribosomal protein S27 OS=Cucumis sativus GN=Csa_6G091290 PE=3 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 6.8e-79 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TrEMBL
Match: B9GZ08_POPTR (40S ribosomal protein S27 (Fragment) OS=Populus trichocarpa GN=POPTR_0003s15960g PE=3 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 4.2e-44 Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TrEMBL
Match: M0SFS6_MUSAM (40S ribosomal protein S27 OS=Musa acuminata subsp. malaccensis PE=3 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 9.3e-44 Identity = 93/122 (76.23%), Postives = 98/122 (80.33%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TrEMBL
Match: E5GB53_CUCME (40S ribosomal protein S27 OS=Cucumis melo subsp. melo PE=3 SV=1) HSP 1 Score: 183.0 bits (463), Expect = 2.7e-43 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TrEMBL
Match: A0A0D2MUG4_GOSRA (40S ribosomal protein S27 OS=Gossypium raimondii GN=B456_004G062400 PE=3 SV=1) HSP 1 Score: 182.6 bits (462), Expect = 3.5e-43 Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TAIR10
Match: AT3G61110.1 (AT3G61110.1 ribosomal protein S27) HSP 1 Score: 181.4 bits (459), Expect = 4.0e-46 Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TAIR10
Match: AT2G45710.1 (AT2G45710.1 Zinc-binding ribosomal protein family protein) HSP 1 Score: 171.4 bits (433), Expect = 4.1e-43 Identity = 79/84 (94.05%), Postives = 81/84 (96.43%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TAIR10
Match: AT5G47930.1 (AT5G47930.1 Zinc-binding ribosomal protein family protein) HSP 1 Score: 168.7 bits (426), Expect = 2.7e-42 Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1
BLAST of Csa6G091290.1 vs. TAIR10
Match: AT3G61111.1 (AT3G61111.1 Zinc-binding ribosomal protein family protein) HSP 1 Score: 152.1 bits (383), Expect = 2.6e-37 Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 1
BLAST of Csa6G091290.1 vs. NCBI nr
Match: gi|700191201|gb|KGN46405.1| (hypothetical protein Csa_6G091290 [Cucumis sativus]) HSP 1 Score: 301.2 bits (770), Expect = 9.7e-79 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1
BLAST of Csa6G091290.1 vs. NCBI nr
Match: gi|566162921|ref|XP_002304634.2| (hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]) HSP 1 Score: 185.7 bits (470), Expect = 6.0e-44 Identity = 95/122 (77.87%), Postives = 101/122 (82.79%), Query Frame = 1
BLAST of Csa6G091290.1 vs. NCBI nr
Match: gi|659119940|ref|XP_008459925.1| (PREDICTED: 40S ribosomal protein S27-2 [Cucumis melo]) HSP 1 Score: 183.0 bits (463), Expect = 3.9e-43 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of Csa6G091290.1 vs. NCBI nr
Match: gi|763755386|gb|KJB22717.1| (hypothetical protein B456_004G062400 [Gossypium raimondii]) HSP 1 Score: 182.6 bits (462), Expect = 5.1e-43 Identity = 85/95 (89.47%), Postives = 88/95 (92.63%), Query Frame = 1
BLAST of Csa6G091290.1 vs. NCBI nr
Match: gi|255543244|ref|XP_002512685.1| (PREDICTED: 40S ribosomal protein S27-2 [Ricinus communis]) HSP 1 Score: 181.8 bits (460), Expect = 8.6e-43 Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
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