Csa4G165870.1 (mRNA) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa4G165870.1
Type	mRNA
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Putative exosome complex exonuclease; contains IPR020568 (Ribosomal protein S5 domain 2-type fold)
Location	Chr4 : 8536859 .. 8538319 (+)
Sequence length	798

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCCGATGGTGAAGAAGAAGTTGTCGCCGGTGATGAAAATGCGGATGATCTAGCAGTATTACCGCCAGTGATTAAAACATCAATGGTTATTGATGAAGAAGACGGCCGGGGGATGAACTATGAAGAAATAGCCGAAGAAGGTAAGTAAGGAGCGGGTGAAGATTTGAATGTATTCAAGAAGAGTATTTTTGGAAAATTGAAAAATGAAAAAGAGGCGTGTCCTAAGCCCTCCCTATGTTTCTTTTTCAGATTTATGTAAATGATCCTGAAATTAAGGCAGTTAATTGAGTAATTCTAGGTTAAGTGTGAGTGGTAAAAGAAAAATTGTGAATCTTCAGTTTTGCTACACGAACGCTGCGGGAATACATCCCCCACCTCGCCACTCCCTCTCTCTCACGCCAACTCTCCCTCCTCGCCTTCCGCTGCTCGCAGCCACTCTTCCTCCGCCCCTCGCCACCGAAGCCCCGCCGCCTCCACCCGCTGTCGACCGCCGGTGAGAGAGCTTCTCTATCGTCTCTCTCTCAGAACTTTTCTTTGCACAGTTTCGCCAACGTTGCATCGCCAACAGCCGAGCGCCACCGCTCCGACCTATATGGAATGACCTTTTTTTCCCTTTTTCAAATCATAACTGGTTTGCAATTTATGTAAACAGATAACAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTACTGAATCAATACGTCCTGATGGAAGATCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGTTAGTTCAGGTTTTGATTTTCAATGATTTGTCATTTCTTACCATTTCCAGCTTTTGTTTATCATTTCGGGTTTGCTTCATCGATTTTGACACTTTAAACTGAATTTGGATATCGACTATTCATCCAGGACCAGTATCTTCTGCAAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGGTGAGTACCTCCACACTTGACCTTATCATATGTGCTAGGGTTTTGTGACGGTTTGTTCTTAATTTGATATAGTGCAGACAATGTTGGCTGCTATCAAAATGGAAGTAATGACACCTTCTGTTGAGTCACCCGATGAGGGTTGCATAGGTTGGCCACTGTCAATTGCTAAAGATTTTTCGTCATTGTTCATCATAATCTTTATGATAACATCCTATACATCTTGGTGATTTGGAGTCTATCTTTTCCAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATTGTTAGGCCTGGGAGACCGGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGGTACCATTTCACATTTTTTTGCAATTTTGCTTTGACATATTGCAATTTGCAGCTGATATTCTTCGAGCAAATGTGGATGCCAATCAAGCGTTAA

mRNA sequence

ATGATTGCCGATGGTGAAGAAGAAGTTGTCGCCGGTGATGAAAATGCGGATGATCTAGCAGTATTACCGCCAGTGATTAAAACATCAATGGTTATTGATGAAGAAGACGGCCGGGGGATGAACTATGAAGAAATAGCCGAAGAAGTTTTGCTACACGAACGCTGCGGGAATACATCCCCCACCTCGCCACTCCCTCTCTCTCACGCCAACTCTCCCTCCTCGCCTTCCGCTGCTCGCAGCCACTCTTCCTCCGCCCCTCGCCACCGAAGCCCCGCCGCCTCCACCCGCTGTCGACCGCCGATAACAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTACTGAATCAATACGTCCTGATGGAAGATCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGACCAGTATCTTCTGCAAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATCAAAATGGAAGTAATGACACCTTCTGTTGAGTCACCCGATGAGGGTTGCATAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATTGTTAGGCCTGGGAGACCGGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGGTACCATTTCACATTTTTTTGCAATTTTGCTTTGACATATTGCAATTTGCAGCTGATATTCTTCGAGCAAATGTGGATGCCAATCAAGCGTTAA

Coding sequence (CDS)

ATGATTGCCGATGGTGAAGAAGAAGTTGTCGCCGGTGATGAAAATGCGGATGATCTAGCAGTATTACCGCCAGTGATTAAAACATCAATGGTTATTGATGAAGAAGACGGCCGGGGGATGAACTATGAAGAAATAGCCGAAGAAGTTTTGCTACACGAACGCTGCGGGAATACATCCCCCACCTCGCCACTCCCTCTCTCTCACGCCAACTCTCCCTCCTCGCCTTCCGCTGCTCGCAGCCACTCTTCCTCCGCCCCTCGCCACCGAAGCCCCGCCGCCTCCACCCGCTGTCGACCGCCGATAACAGTACAAACAATGGGACTGCCAAATGCTGCTTCTGGGGACTTGTCGTCGCAAATGGAAGTCGATGCTTTTAGACGACTCTTTCCAATTCAGTTTTATGAGCGCCATCTTACTGAATCAATACGTCCTGATGGAAGATCACTGGGAAAAGCTAGAGACACAACCATTGCTCTTGGACCAGTATCTTCTGCAAACGGGTCAGCCCTGGCTAAGATTGGTTCGACGACAATGTTGGCTGCTATCAAAATGGAAGTAATGACACCTTCTGTTGAGTCACCCGATGAGGGTTGCATAGCTCTTGATTTCCACATGCCTCCAGTATGCTCTCCAATTGTTAGGCCTGGGAGACCGGCGGAAGCAGCACCTGTGATTTCAAAGCAGTTATCTGACACTATTTCGAGGTACCATTTCACATTTTTTTGCAATTTTGCTTTGACATATTGCAATTTGCAGCTGATATTCTTCGAGCAAATGTGGATGCCAATCAAGCGTTAA

Protein sequence

MIADGEEEVVAGDENADDLAVLPPVIKTSMVIDEEDGRGMNYEEIAEEVLLHERCGNTSPTSPLPLSHANSPSSPSAARSHSSSAPRHRSPAASTRCRPPITVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISRYHFTFFCNFALTYCNLQLIFFEQMWMPIKR*

Homology

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BLAST of Csa4G165870.1 vs. Swiss-Prot
Match: EXOS8_HUMAN (Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.9e-22
Identity = 47/109 (43.12%), Postives = 72/109 (66.06%), Query Frame = 1


Query: 125 FRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 184
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 185 EVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTI 234
           E   PS ++PD+G +  +  +PP+CS   R G P E A V S+ ++D I
Sbjct: 65  EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVI 113

[Close]

BLAST of Csa4G165870.1 vs. Swiss-Prot
Match: EXOS8_MOUSE (Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.6e-21
Identity = 46/109 (42.20%), Postives = 71/109 (65.14%), Query Frame = 1


Query: 125 FRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 184
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G +S+A+GSAL K+G+TT++  +K 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRATTVNIGSISTADGSALVKLGNTTVICGVKA 64

Query: 185 EVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTI 234
           E   P V++PD G +  +  +PP+CS   R G P E A V S+ ++D +
Sbjct: 65  EFAAPPVDAPDRGYVVPNVDLPPLCSSRFRTGPPGEEAQVTSQFIADVV 113

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BLAST of Csa4G165870.1 vs. Swiss-Prot
Match: EXOS8_BOVIN (Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.4e-19
Identity = 45/109 (41.28%), Postives = 69/109 (63.30%), Query Frame = 1


Query: 125 FRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 184
           F+ + P+++Y R L E+ RPDGR LG+ R TT+ +G + +A+GSAL K+G+TT++  IK 
Sbjct: 5   FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSIGTADGSALVKLGNTTVICGIKA 64

Query: 185 EVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTI 234
           E   P  ++PD+G +  +  + P+CS   R G P E A V S+ ++D I
Sbjct: 65  EFGAPPTDAPDKGYVVPNVDLSPLCSSRFRSGPPGEEAQVASQFIADVI 113

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BLAST of Csa4G165870.1 vs. Swiss-Prot
Match: RRP43_SCHPO (Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp43 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-14
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 1


Query: 125 FRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKM 184
           F+++ P Q+    L + +R DGRS+ + R+  I    +S+ANGSA+ + G    +  IK 
Sbjct: 17  FKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIKA 76

Query: 185 EVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISR 236
           E+  P   SP+EG I  +  + P+CS   +PG P++ A V+S++L  T+ +
Sbjct: 77  EIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQ 127

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BLAST of Csa4G165870.1 vs. Swiss-Prot
Match: RRP42_METKA (Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rrp42 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-10
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1


Query: 143 RPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALD 202
           R DGR   + R   +  G +S ANGSAL ++G+T ++  +K+EV  P  +SP+EG +A++
Sbjct: 23  RIDGRDFEEFRPIEVRAGVISKANGSALVRLGNTQLVVGVKLEVGRPYPDSPNEGALAVN 82

Query: 203 FHMPPVCSPIVRPGRPAEAAPVISK 228
             + P+  P   PG P E A  +S+
Sbjct: 83  AELVPLADPSFEPGPPDENAIELSR 107

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BLAST of Csa4G165870.1 vs. TrEMBL
Match: A0A0A0KZP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G165870 PE=4 SV=1)

HSP 1 Score: 533.5 bits (1373), Expect = 1.5e-148
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1


Query: 1   MIADGEEEVVAGDENADDLAVLPPVIKTSMVIDEEDGRGMNYEEIAEEVLLHERCGNTSP 60
           MIADGEEEVVAGDENADDLAVLPPVIKTSMVIDEEDGRGMNYEEIAEEVLLHERCGNTSP
Sbjct: 1   MIADGEEEVVAGDENADDLAVLPPVIKTSMVIDEEDGRGMNYEEIAEEVLLHERCGNTSP 60

Query: 61  TSPLPLSHANSPSSPSAARSHSSSAPRHRSPAASTRCRPPITVQTMGLPNAASGDLSSQM 120
           TSPLPLSHANSPSSPSAARSHSSSAPRHRSPAASTRCRPPITVQTMGLPNAASGDLSSQM
Sbjct: 61  TSPLPLSHANSPSSPSAARSHSSSAPRHRSPAASTRCRPPITVQTMGLPNAASGDLSSQM 120

Query: 121 EVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLA 180
           EVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLA
Sbjct: 121 EVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLA 180

Query: 181 AIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISRYHFTF 240
           AIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISRYHFTF
Sbjct: 181 AIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISRYHFTF 240

Query: 241 FCNFALTYCNLQLIFFEQMWMPIKR 266
           FCNFALTYCNLQLIFFEQMWMPIKR
Sbjct: 241 FCNFALTYCNLQLIFFEQMWMPIKR 265

[Close]

BLAST of Csa4G165870.1 vs. TrEMBL
Match: A0A061EX61_THECC (3'-5'-exoribonuclease family protein OS=Theobroma cacao GN=TCM_024636 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-55
Identity = 109/128 (85.16%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 106 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 165
           MGLPNA SGDLS+++EVDAFRRLFP++FYE+HL+ESIRPD R LG+ARDTTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLSESIRPDARPLGRARDTTIALGAVASA 60

Query: 166 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 225
           NGSALAKIGSTTMLAAIKMEVMTPS E+PDEGC+A+DFHMPP+CSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSTETPDEGCVAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 226 SKQLSDTI 234
           SKQLSDTI
Sbjct: 121 SKQLSDTI 127

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BLAST of Csa4G165870.1 vs. TrEMBL
Match: B9II78_POPTR (3' exoribonuclease domain 1-containing family protein OS=Populus trichocarpa GN=POPTR_0016s05590g PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.5e-55
Identity = 110/130 (84.62%), Postives = 124/130 (95.38%), Query Frame = 1


Query: 106 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 165
           MG+P+A SGDLSS+MEVDAFR LFP++++ERHL+ESIRPD R LG+ARDTT+ALG V+SA
Sbjct: 1   MGVPDA-SGDLSSEMEVDAFRHLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASA 60

Query: 166 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 225
           +GSALAKIGSTTMLAAIKMEVMTPS ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  HGSALAKIGSTTMLAAIKMEVMTPSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 226 SKQLSDTISR 236
           SKQLSDTISR
Sbjct: 121 SKQLSDTISR 129

[Close]

BLAST of Csa4G165870.1 vs. TrEMBL
Match: U5FN09_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05590g PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.5e-55
Identity = 110/130 (84.62%), Postives = 124/130 (95.38%), Query Frame = 1


Query: 106 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 165
           MG+P+A SGDLSS+MEVDAFR LFP++++ERHL+ESIRPD R LG+ARDTT+ALG V+SA
Sbjct: 1   MGVPDA-SGDLSSEMEVDAFRHLFPLRYFERHLSESIRPDARPLGRARDTTLALGAVASA 60

Query: 166 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 225
           +GSALAKIGSTTMLAAIKMEVMTPS ESPDEGCIA+DFHMPP+CSPIVRPGRPAEAAPVI
Sbjct: 61  HGSALAKIGSTTMLAAIKMEVMTPSTESPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVI 120

Query: 226 SKQLSDTISR 236
           SKQLSDTISR
Sbjct: 121 SKQLSDTISR 129

[Close]

BLAST of Csa4G165870.1 vs. TrEMBL
Match: A0A0D2QBI8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 7.3e-55
Identity = 108/128 (84.38%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 106 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 165
           MGLPNA SGDLS+++EVDAFRRLFP++FYE+HL ESIRPD R LG+AR+TTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLLESIRPDARPLGRARETTIALGAVASA 60

Query: 166 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 225
           NGSALAKIGSTTMLAAIKMEVMTPS+E+PDEGCIA+DFHMPP+CSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSLETPDEGCIAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 226 SKQLSDTI 234
           +KQLSDTI
Sbjct: 121 AKQLSDTI 127

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BLAST of Csa4G165870.1 vs. TAIR10
Match: AT1G60080.1 (AT1G60080.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-54
Identity = 101/128 (78.91%), Postives = 118/128 (92.19%), Query Frame = 1


Query: 106 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 165
           MG+P+AA  DLS++MEVDAFRR+FP++F+ERHL+ES+RPDGR LGKARDT + LG VS+A
Sbjct: 1   MGIPDAAQ-DLSTEMEVDAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTA 60

Query: 166 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 225
           +GSALAKIGSTTMLAAI+MEVMTPS +SPDEGCIA++FHMPP+CSP VRPGRPAEAAPVI
Sbjct: 61  DGSALAKIGSTTMLAAIRMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVI 120

Query: 226 SKQLSDTI 234
           SK+LSDTI
Sbjct: 121 SKRLSDTI 127

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BLAST of Csa4G165870.1 vs. TAIR10
Match: AT3G07750.1 (AT3G07750.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07
Identity = 31/103 (30.10%), Postives = 48/103 (46.60%), Query Frame = 1


Query: 133 FYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSVE 192
           F +  + + +R DGR     R   +  G +  ANGSA  +IG T ++A++K E+  PS  
Sbjct: 10  FIKGGIAQDLRTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSL 69

Query: 193 SPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISR 236
            PD+G +A+       CSP   P         +S +L+  + R
Sbjct: 70  QPDKGKVAVFID----CSPTAEPTFGGRGGEELSSELALALQR 108

[Close]

BLAST of Csa4G165870.1 vs. TAIR10
Match: AT3G60500.1 (AT3G60500.1 3'-5'-exoribonuclease family protein)

HSP 1 Score: 52.4 bits (124), Expect = 5.1e-07
Identity = 28/91 (30.77%), Postives = 44/91 (48.35%), Query Frame = 1


Query: 132 QFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLAAIKMEVMTPSV 191
           +F E  L   +R DGR L   R  TI  G      GS+  ++G T ++  +  +++ P  
Sbjct: 17  KFVETALQSELRVDGRGLYDYRKLTIKFG---KEYGSSEVQLGQTHVMGFVTAQLVQPYK 76

Query: 192 ESPDEGCIALDFHMPPVCSPIVRPGRPAEAA 223
           + P+EG +++     P+  P   PGRP E+A
Sbjct: 77  DRPNEGSLSIFTEFSPMADPSFEPGRPGESA 104

[Close]

BLAST of Csa4G165870.1 vs. NCBI nr
Match: gi|700198684|gb|KGN53842.1| (hypothetical protein Csa_4G165870 [Cucumis sativus])

HSP 1 Score: 533.5 bits (1373), Expect = 2.1e-148
Identity = 265/265 (100.00%), Postives = 265/265 (100.00%), Query Frame = 1


Query: 1   MIADGEEEVVAGDENADDLAVLPPVIKTSMVIDEEDGRGMNYEEIAEEVLLHERCGNTSP 60
           MIADGEEEVVAGDENADDLAVLPPVIKTSMVIDEEDGRGMNYEEIAEEVLLHERCGNTSP
Sbjct: 1   MIADGEEEVVAGDENADDLAVLPPVIKTSMVIDEEDGRGMNYEEIAEEVLLHERCGNTSP 60

Query: 61  TSPLPLSHANSPSSPSAARSHSSSAPRHRSPAASTRCRPPITVQTMGLPNAASGDLSSQM 120
           TSPLPLSHANSPSSPSAARSHSSSAPRHRSPAASTRCRPPITVQTMGLPNAASGDLSSQM
Sbjct: 61  TSPLPLSHANSPSSPSAARSHSSSAPRHRSPAASTRCRPPITVQTMGLPNAASGDLSSQM 120

Query: 121 EVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLA 180
           EVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLA
Sbjct: 121 EVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSANGSALAKIGSTTMLA 180

Query: 181 AIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISRYHFTF 240
           AIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISRYHFTF
Sbjct: 181 AIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVISKQLSDTISRYHFTF 240

Query: 241 FCNFALTYCNLQLIFFEQMWMPIKR 266
           FCNFALTYCNLQLIFFEQMWMPIKR
Sbjct: 241 FCNFALTYCNLQLIFFEQMWMPIKR 265

[Close]

BLAST of Csa4G165870.1 vs. NCBI nr
Match: gi|659121681|ref|XP_008460772.1| (PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 7.7e-66
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1


Query: 101 ITVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALG 160
           I VQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHL ESIRPDGR+LGKARDTTIALG
Sbjct: 8   IIVQTMGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALG 67

Query: 161 PVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE 220
           PVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE
Sbjct: 68  PVSSANGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAE 127

Query: 221 AAPVISKQLSDTIS 235
           AAPVISKQLSDTIS
Sbjct: 128 AAPVISKQLSDTIS 141

[Close]

BLAST of Csa4G165870.1 vs. NCBI nr
Match: gi|449463354|ref|XP_004149399.1| (PREDICTED: exosome complex component RRP43 [Cucumis sativus])

HSP 1 Score: 255.8 bits (652), Expect = 8.6e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1


Query: 106 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 165
           MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 60

Query: 166 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 225
           NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 226 SKQLSDTIS 235
           SKQLSDTIS
Sbjct: 121 SKQLSDTIS 129

[Close]

BLAST of Csa4G165870.1 vs. NCBI nr
Match: gi|659121683|ref|XP_008460773.1| (PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo])

HSP 1 Score: 252.7 bits (644), Expect = 7.2e-64
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 1


Query: 106 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 165
           MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHL ESIRPDGR+LGKARDTTIALGPVSSA
Sbjct: 1   MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLAESIRPDGRALGKARDTTIALGPVSSA 60

Query: 166 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 225
           NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 120

Query: 226 SKQLSDTIS 235
           SKQLSDTIS
Sbjct: 121 SKQLSDTIS 129

[Close]

BLAST of Csa4G165870.1 vs. NCBI nr
Match: gi|590635882|ref|XP_007028731.1| (3'-5'-exoribonuclease family protein [Theobroma cacao])

HSP 1 Score: 224.9 bits (572), Expect = 1.6e-55
Identity = 109/128 (85.16%), Postives = 123/128 (96.09%), Query Frame = 1


Query: 106 MGLPNAASGDLSSQMEVDAFRRLFPIQFYERHLTESIRPDGRSLGKARDTTIALGPVSSA 165
           MGLPNA SGDLS+++EVDAFRRLFP++FYE+HL+ESIRPD R LG+ARDTTIALG V+SA
Sbjct: 1   MGLPNA-SGDLSTEVEVDAFRRLFPLRFYEKHLSESIRPDARPLGRARDTTIALGAVASA 60

Query: 166 NGSALAKIGSTTMLAAIKMEVMTPSVESPDEGCIALDFHMPPVCSPIVRPGRPAEAAPVI 225
           NGSALAKIGSTTMLAAIKMEVMTPS E+PDEGC+A+DFHMPP+CSPIVRPGRPAEAAPV+
Sbjct: 61  NGSALAKIGSTTMLAAIKMEVMTPSTETPDEGCVAIDFHMPPICSPIVRPGRPAEAAPVV 120

Query: 226 SKQLSDTI 234
           SKQLSDTI
Sbjct: 121 SKQLSDTI 127

The following BLAST results are available for this feature:

BLAST of Csa4G165870.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EXOS8_HUMAN	8.9e-22	43.12	Exosome complex component RRP43 OS=Homo sapiens GN=EXOSC8 PE=1 SV=1	[more]
EXOS8_MOUSE	2.6e-21	42.20	Exosome complex component RRP43 OS=Mus musculus GN=Exosc8 PE=1 SV=1	[more]
EXOS8_BOVIN	1.4e-19	41.28	Exosome complex component RRP43 OS=Bos taurus GN=EXOSC8 PE=2 SV=1	[more]
RRP43_SCHPO	1.1e-14	34.23	Exosome complex component rrp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
RRP42_METKA	2.7e-10	37.65	Exosome complex component Rrp42 OS=Methanopyrus kandleri (strain AV19 / DSM 6324...	[more]

BLAST of Csa4G165870.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZP2_CUCSA	1.5e-148	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G165870 PE=4 SV=1	[more]
A0A061EX61_THECC	1.1e-55	85.16	3'-5'-exoribonuclease family protein OS=Theobroma cacao GN=TCM_024636 PE=4 SV=1	[more]
B9II78_POPTR	2.5e-55	84.62	3' exoribonuclease domain 1-containing family protein OS=Populus trichocarpa GN=...	[more]
U5FN09_POPTR	2.5e-55	84.62	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s05590g PE=4 SV=1	[more]
A0A0D2QBI8_GOSRA	7.3e-55	84.38	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G116000 PE=4 SV=1	[more]

BLAST of Csa4G165870.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G60080.1	1.5e-54	78.91	3'-5'-exoribonuclease family protein	[more]
AT3G07750.1	1.3e-07	30.10	3'-5'-exoribonuclease family protein	[more]
AT3G60500.1	5.1e-07	30.77	3'-5'-exoribonuclease family protein	[more]

BLAST of Csa4G165870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198684\|gb\|KGN53842.1\|	2.1e-148	100.00	hypothetical protein Csa_4G165870 [Cucumis sativus]	[more]
gi\|659121681\|ref\|XP_008460772.1\|	7.7e-66	97.76	PREDICTED: exosome complex component RRP43 isoform X1 [Cucumis melo]	[more]
gi\|449463354\|ref\|XP_004149399.1\|	8.6e-65	100.00	PREDICTED: exosome complex component RRP43 [Cucumis sativus]	[more]
gi\|659121683\|ref\|XP_008460773.1\|	7.2e-64	98.45	PREDICTED: exosome complex component RRP43 isoform X2 [Cucumis melo]	[more]
gi\|590635882\|ref\|XP_007028731.1\|	1.6e-55	85.16	3'-5'-exoribonuclease family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001247	ExoRNase_PH_dom1
IPR020568	Ribosomal_S5_D2-typ_fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0000178	exosome (RNase complex)

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0006401	RNA catabolic process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006401	RNA catabolic process
biological_process	GO:0006396	RNA processing
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005829	cytosol
molecular_function	GO:0004527	exonuclease activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Csa4G165870	Csa4G165870	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Csa4G165870.1	Csa4G165870.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Csa4G165870.1.cds1	Csa4G165870.1.cds1	CDS
Csa4G165870.1.cds2	Csa4G165870.1.cds2	CDS
Csa4G165870.1.cds3	Csa4G165870.1.cds3	CDS
Csa4G165870.1.cds4	Csa4G165870.1.cds4	CDS
Csa4G165870.1.cds5	Csa4G165870.1.cds5	CDS
Csa4G165870.1.cds6	Csa4G165870.1.cds6	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 153..235 score: 6.3
IPR020568	Ribosomal protein S5 domain 2-type fold	unknown	SSF54211	Ribosomal protein S5 domain 2-like	coord: 118..237 score: 7.09
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 114..235 score: 2.1