CsGy6G002010.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy6G002010.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	copper transport protein CCH
Location	Chr6 : 1433125 .. 1433531 (-)
Sequence length	333

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAGAATGGCTAATGCAAGTATTTCTAAGAGAGAAAATTCTTGGAATTTGATTTCTTACGGGTTCTAATGGGTGTTGTTTTTCTGGCCATAGGTGGTGGAATTGAAGGTCTTTTTGCATTGTGAGGAGTGTATCAAGAAGATTCTCAAAGCCATCAAGAAAATCCAAGGTTTGTGTTTTCAATGTCTTCGTCAGAGCCTCCTATGGTTAAGTAATTCATTTGGGGTTTATTTTCCTTTCTTTTCTTCTCCATTTGCAGATATAGAAACATATAATGTAGATATGGAGATGAACAAAGTGATTGTTACAGGCAATGTCACTAACGAAGAAGTTATCAAAGTTCTTCAGAAAATTAGAAAAACTGCAATTCCATGGCAAGATGATGAACTCAACAACATTAATTACTAG

mRNA sequence

ACAGAATGGCTAATGCAAGTGGTGGAATTGAAGGTCTTTTTGCATTGTGAGGAGTGTATCAAGAAGATTCTCAAAGCCATCAAGAAAATCCAAGGTTTGTGTTTTCAATGTCTTCGTCAGAGCCTCCTATGGTTAAGTAATTCATTTGGGGTTTATTTTCCTTTCTTTTCTTCTCCATTTGCAGATATAGAAACATATAATGTAGATATGGAGATGAACAAAGTGATTGTTACAGGCAATGTCACTAACGAAGAAGTTATCAAAGTTCTTCAGAAAATTAGAAAAACTGCAATTCCATGGCAAGATGATGAACTCAACAACATTAATTACTAG

Coding sequence (CDS)

ACAGAATGGCTAATGCAAGTGGTGGAATTGAAGGTCTTTTTGCATTGTGAGGAGTGTATCAAGAAGATTCTCAAAGCCATCAAGAAAATCCAAGGTTTGTGTTTTCAATGTCTTCGTCAGAGCCTCCTATGGTTAAGTAATTCATTTGGGGTTTATTTTCCTTTCTTTTCTTCTCCATTTGCAGATATAGAAACATATAATGTAGATATGGAGATGAACAAAGTGATTGTTACAGGCAATGTCACTAACGAAGAAGTTATCAAAGTTCTTCAGAAAATTAGAAAAACTGCAATTCCATGGCAAGATGATGAACTCAACAACATTAATTACTAG

Protein sequence

TEWLMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY

Homology

[Close]

BLAST of CsGy6G002010.1 vs. NCBI nr
Match: XP_004138408.1 (PREDICTED: copper transport protein ATX1 [Cucumis sativus] >KGN45813.1 hypothetical protein Csa_6G013360 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 8.8e-28
Identity = 74/107 (69.16%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKVFLHCEECIKKILKAIKKIQ                              DI
Sbjct: 1   MANVVELKVFLHCEECIKKILKAIKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY 111
           ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY
Sbjct: 61  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY 77

[Close]

BLAST of CsGy6G002010.1 vs. NCBI nr
Match: XP_008456748.1 (PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 1.1e-25
Identity = 70/105 (66.67%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKVFLHC+ECIKKILKAIKKIQ                              DI
Sbjct: 1   MANVVELKVFLHCDECIKKILKAIKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNI 109
           ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTA+PWQDDELNNI
Sbjct: 61  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAVPWQDDELNNI 75

[Close]

BLAST of CsGy6G002010.1 vs. NCBI nr
Match: XP_022133451.1 (copper transport protein ATX1 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 4.4e-19
Identity = 60/104 (57.69%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKV LHCE+CIKKILKAIKKIQ                              DI
Sbjct: 41  MANVVELKVGLHCEDCIKKILKAIKKIQ------------------------------DI 100

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 108
           ETYNVD ++NKV VTGNVT EEVIKVL KI KTAIPWQ DE+NN
Sbjct: 101 ETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNN 114

[Close]

BLAST of CsGy6G002010.1 vs. NCBI nr
Match: KDP21700.1 (hypothetical protein JCGZ_03371 [Jatropha curcas])

HSP 1 Score: 96.7 bits (239), Expect = 5.3e-17
Identity = 57/102 (55.88%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 6   QVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIET 65
           QVVELKV LHCEECIKKILKAIKKIQ                              DIET
Sbjct: 7   QVVELKVGLHCEECIKKILKAIKKIQ------------------------------DIET 66

Query: 66  YNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 108
           YNVD+E+NKVIVTGNVT EEVIKV+ KI KTA  W++   N+
Sbjct: 67  YNVDIELNKVIVTGNVTTEEVIKVIHKIGKTATTWEEYSTNS 78

[Close]

BLAST of CsGy6G002010.1 vs. NCBI nr
Match: XP_011469959.1 (PREDICTED: uncharacterized protein LOC101293633 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 96.3 bits (238), Expect = 7.0e-17
Identity = 57/99 (57.58%), Postives = 64/99 (64.65%), Query Frame = 0


Query: 7   VVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIETY 66
           VVELKV LHCEECIKKILKAIKKI+                             ADIETY
Sbjct: 4   VVELKVGLHCEECIKKILKAIKKIE-----------------------------ADIETY 63

Query: 67  NVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPW-QDDE 105
           +VD ++NKVIVTGNVT E+VI+ LQKI+KTAIPW Q DE
Sbjct: 64  DVDTQLNKVIVTGNVTTEQVIRALQKIKKTAIPWDQQDE 73

[Close]

BLAST of CsGy6G002010.1 vs. TAIR10
Match: AT5G05365.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 2.2e-17
Identity = 48/100 (48.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKV LHC+ECI+KILKAIKKI+                              DI
Sbjct: 1   MANVVELKVNLHCDECIRKILKAIKKIE------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDD 104
           E Y+VD ++NKV VTGNVT E+VI+VLQK+RK A+ W  D
Sbjct: 61  EAYDVDTQLNKVTVTGNVTEEQVIRVLQKVRKAAVKWDQD 70

[Close]

BLAST of CsGy6G002010.1 vs. TAIR10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 7.5e-05
Identity = 31/100 (31.00%), Postives = 42/100 (42.00%), Query Frame = 0


Query: 10  LKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIETYNVD 69
           L+V +HCE C +KI K + KI G                              + T N+D
Sbjct: 34  LRVSIHCEGCKRKIKKILSKIDG------------------------------VYTTNID 93

Query: 70  MEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNIN 110
           ++  KV V GNV  E +IK + K  + A  W     NNIN
Sbjct: 94  VKQQKVTVIGNVEPEILIKKIMKAGRHAELWPTSMENNIN 103

[Close]

BLAST of CsGy6G002010.1 vs. TAIR10
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 9.7e-05
Identity = 27/96 (28.12%), Postives = 45/96 (46.88%), Query Frame = 0


Query: 5   MQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIE 64
           + +VEL V + C+ C KK+ +AI K+ G                              ++
Sbjct: 15  LSIVELLVDMDCKGCEKKVRRAISKLDG------------------------------VD 74

Query: 65  TYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPW 101
           T  +D++  KV VTG V  EEV+K++++  +TA  W
Sbjct: 75  TVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTAEYW 80

[Close]

BLAST of CsGy6G002010.1 vs. TrEMBL
Match: tr|A0A0A0K8N1|A0A0A0K8N1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 5.8e-28
Identity = 74/107 (69.16%), Postives = 75/107 (70.09%), Query Frame = 0


Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKVFLHCEECIKKILKAIKKIQ                              DI
Sbjct: 1   MANVVELKVFLHCEECIKKILKAIKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY 111
           ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY
Sbjct: 61  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNINY 77

[Close]

BLAST of CsGy6G002010.1 vs. TrEMBL
Match: tr|A0A1S3C423|A0A1S3C423_CUCME (superoxide dismutase 1 copper chaperone OS=Cucumis melo OX=3656 GN=LOC103496596 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.1e-26
Identity = 70/105 (66.67%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKVFLHC+ECIKKILKAIKKIQ                              DI
Sbjct: 1   MANVVELKVFLHCDECIKKILKAIKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNNI 109
           ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTA+PWQDDELNNI
Sbjct: 61  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAVPWQDDELNNI 75

[Close]

BLAST of CsGy6G002010.1 vs. TrEMBL
Match: tr|A0A067JNY7|A0A067JNY7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03371 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.5e-17
Identity = 57/102 (55.88%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 6   QVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIET 65
           QVVELKV LHCEECIKKILKAIKKIQ                              DIET
Sbjct: 7   QVVELKVGLHCEECIKKILKAIKKIQ------------------------------DIET 66

Query: 66  YNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 108
           YNVD+E+NKVIVTGNVT EEVIKV+ KI KTA  W++   N+
Sbjct: 67  YNVDIELNKVIVTGNVTTEEVIKVIHKIGKTATTWEEYSTNS 78

[Close]

BLAST of CsGy6G002010.1 vs. TrEMBL
Match: tr|A0A2C9VMM9|A0A2C9VMM9_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G136400 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-17
Identity = 55/104 (52.88%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 4   LMQVVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADI 63
           +  VVELKV LHC+ECIKKILKA+KKIQ                              DI
Sbjct: 1   MTNVVELKVGLHCDECIKKILKAVKKIQ------------------------------DI 60

Query: 64  ETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 108
           ETYNVD+E+NKVIVTGNVT EEVI+V+QKI KTA  W  D+ N+
Sbjct: 61  ETYNVDIELNKVIVTGNVTTEEVIRVIQKIGKTATAWDGDQTNS 74

[Close]

BLAST of CsGy6G002010.1 vs. TrEMBL
Match: tr|A0A2P4HGR6|A0A2P4HGR6_QUESU (Copper transport protein atx1 OS=Quercus suber OX=58331 GN=CFP56_45816 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-17
Identity = 55/100 (55.00%), Postives = 64/100 (64.00%), Query Frame = 0


Query: 7   VVELKVFLHCEECIKKILKAIKKIQGLCFQCLRQSLLWLSNSFGVYFPFFSSPFADIETY 66
           VVELKV LHCE+CIKKILKAIKK+Q                              DIETY
Sbjct: 4   VVELKVGLHCEDCIKKILKAIKKMQ------------------------------DIETY 63

Query: 67  NVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELN 107
           NVD ++NKVIVTGNVTNEEVI+VLQKI K+A  W+ +E+N
Sbjct: 64  NVDTQLNKVIVTGNVTNEEVIRVLQKIGKSASTWEGEEIN 73

The following BLAST results are available for this feature:

BLAST of CsGy6G002010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138408.1	8.8e-28	69.16	PREDICTED: copper transport protein ATX1 [Cucumis sativus] >KGN45813.1 hypotheti...	[more]
XP_008456748.1	1.1e-25	66.67	PREDICTED: superoxide dismutase 1 copper chaperone [Cucumis melo]	[more]
XP_022133451.1	4.4e-19	57.69	copper transport protein ATX1 [Momordica charantia]	[more]
KDP21700.1	5.3e-17	55.88	hypothetical protein JCGZ_03371 [Jatropha curcas]	[more]
XP_011469959.1	7.0e-17	57.58	PREDICTED: uncharacterized protein LOC101293633 isoform X1 [Fragaria vesca subsp...	[more]

BLAST of CsGy6G002010.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05365.1	2.2e-17	48.00	Heavy metal transport/detoxification superfamily protein	[more]
AT5G27690.1	7.5e-05	31.00	Heavy metal transport/detoxification superfamily protein	[more]
AT3G56891.1	9.7e-05	28.13	Heavy metal transport/detoxification superfamily protein	[more]

BLAST of CsGy6G002010.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy6G002010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8N1\|A0A0A0K8N1_CUCSA	5.8e-28	69.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV=1	[more]
tr\|A0A1S3C423\|A0A1S3C423_CUCME	7.1e-26	66.67	superoxide dismutase 1 copper chaperone OS=Cucumis melo OX=3656 GN=LOC103496596 ...	[more]
tr\|A0A067JNY7\|A0A067JNY7_JATCU	3.5e-17	55.88	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03371 PE=4 SV=1	[more]
tr\|A0A2C9VMM9\|A0A2C9VMM9_MANES	4.6e-17	52.88	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_07G136400 PE=4 SV=...	[more]
tr\|A0A2P4HGR6\|A0A2P4HGR6_QUESU	6.0e-17	55.00	Copper transport protein atx1 OS=Quercus suber OX=58331 GN=CFP56_45816 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy6G002010	CsGy6G002010	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G002010.1.CDS.2	CsGy6G002010.1.CDS.2	CDS
CsGy6G002010.1.CDS.1	CsGy6G002010.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy6G002010.1.exon.2	CsGy6G002010.1.exon.2	exon
CsGy6G002010.1.exon.1	CsGy6G002010.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy6G002010.1	CsGy6G002010.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 5..98 e-value: 1.2E-12 score: 49.9
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 61..104
None	No IPR available	PANTHER	PTHR22814:SF60	HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN	coord: 6..32
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 6..32
None	No IPR available	PANTHER	PTHR22814:SF60	HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN	coord: 61..104