CsGy2G013540.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G013540.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	transmembrane protein%2C putative (DUF1279)
Location	Chr2 : 13238116 .. 13238553 (+)
Sequence length	438

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTTGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGA

mRNA sequence

ATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTTGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGA

Coding sequence (CDS)

ATGTCTTTCTTCACTGGCGGCGGAAGATTCCGTGAGCTTCTTAAGAAGTACGGAAAAGTCGCAATTGGAGTTCATTTCTCAGTATCGGGGGCTTCGATCACTGGCCTCTATGTTGCCATCAAGAACAATGTCGATGTTGAATCACTACTCGATAAGCTACATATGGATCGATTCTTCTCTAAAGATCAGCCGCAGATAAATCCCTCGGAAGCCACATCGTCCGTAGACGACGGATTTATGAACGAAGAAAGATCCGCTTCGGAAATTCAACCGACAAGGAATCGTACCGCCGAACTTGCAGCGTCGACTGGCGGTGCGTTGGCTTTGGCTGTGCTTTGCAACAAAGCGTTACTGCCTATTCGGATCCCAATAACGATTGCATTAACGCCGCCGATTGCGAGGTTGCTGGCGAGGCGAGGGATTGTGAGAAGTGGTTGA

Protein sequence

MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPIRIPITIALTPPIARLLARRGIVRSG

Homology

[Close]

BLAST of CsGy2G013540.1 vs. NCBI nr
Match: XP_004147050.1 (PREDICTED: uncharacterized protein LOC101221163 [Cucumis sativus] >KGN61943.1 hypothetical protein Csa_2G270860 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 1.1e-70
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsGy2G013540.1 vs. NCBI nr
Match: XP_008457709.1 (PREDICTED: uncharacterized protein LOC103497342 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 1.0e-68
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQ NPSE +SSVDDGF+NEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsGy2G013540.1 vs. NCBI nr
Match: XP_023533856.1 (uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236.9 bits (603), Expect = 4.4e-59
Identity = 129/152 (84.87%), Postives = 135/152 (88.82%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+FFTGGGRFRELL+KYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD F S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSSASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPT-------RNRTAELAASTGGALALAVLC 120
           KD PQ +PSE TSSVDDGF+ EER  SEIQ T       RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSEIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIVRSG 146
           NKALLPIR+PITIALTPPIARLLARRGI+RSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CsGy2G013540.1 vs. NCBI nr
Match: XP_022947464.1 (uncharacterized protein LOC111451320 [Cucurbita moschata])

HSP 1 Score: 234.2 bits (596), Expect = 2.8e-58
Identity = 128/152 (84.21%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+FFTGGGRFRELL+KYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD F S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPT-------RNRTAELAASTGGALALAVLC 120
           KD PQ +PSE TSSVDDGF+ EER  S IQ T       RNRTAELAASTGGALALAVLC
Sbjct: 61  KDTPQTSPSEITSSVDDGFVIEERPTSGIQSTVMEEPRKRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIVRSG 146
           NKALLPIR+PITIALTPPIARLLARRGI+RSG
Sbjct: 121 NKALLPIRVPITIALTPPIARLLARRGIMRSG 152

[Close]

BLAST of CsGy2G013540.1 vs. NCBI nr
Match: XP_022146083.1 (uncharacterized protein LOC111015379 [Momordica charantia])

HSP 1 Score: 233.4 bits (594), Expect = 4.8e-58
Identity = 128/152 (84.21%), Postives = 134/152 (88.16%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           M+FFTGGGRFRELL+KYGKVAIGVHFSVS ASITGLYVAIKNNVDVESLLDKLHMD F S
Sbjct: 1   MAFFTGGGRFRELLRKYGKVAIGVHFSVSAASITGLYVAIKNNVDVESLLDKLHMDGFSS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPT-------RNRTAELAASTGGALALAVLC 120
           KDQPQ  PSE+TSS DDGF+ EER  SE Q T       RNRTAELAASTGGALALAVLC
Sbjct: 61  KDQPQTIPSESTSSADDGFVIEERPVSENQSTAVQEPRRRNRTAELAASTGGALALAVLC 120

Query: 121 NKALLPIRIPITIALTPPIARLLARRGIVRSG 146
           NKALLPIRIPITIALTPPI+RLLARRGI+RSG
Sbjct: 121 NKALLPIRIPITIALTPPISRLLARRGIMRSG 152

[Close]

BLAST of CsGy2G013540.1 vs. TAIR10
Match: AT2G20940.1 (Protein of unknown function (DUF1279))

HSP 1 Score: 142.1 bits (357), Expect = 2.6e-34
Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 0


Query: 9   RFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQINP 68
           R +E++KKYGKVA+GVHFSVSG SI+G Y+AIKNNVDVESLL+K  +  F SK+ P  NP
Sbjct: 4   RLKEIVKKYGKVALGVHFSVSGVSISGFYIAIKNNVDVESLLEKYQIPWFSSKENP--NP 63

Query: 69  SEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPIRIPITIAL 128
           S      + G +  +          N+T +LA S GGALALAVLCNKAL PIR+PIT+AL
Sbjct: 64  SLDLKLEEQGSVTSD----------NKTKQLAKSAGGALALAVLCNKALFPIRVPITMAL 123

Query: 129 TPPIARLLARRGIVRSG 146
           TPPIAR L +R I+++G
Sbjct: 124 TPPIARFLRQRKILKTG 128

[Close]

BLAST of CsGy2G013540.1 vs. TrEMBL
Match: tr|A0A0A0LJH5|A0A0A0LJH5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270860 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 7.3e-71
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsGy2G013540.1 vs. TrEMBL
Match: tr|A0A1S3C646|A0A1S3C646_CUCME (uncharacterized protein LOC103497342 OS=Cucumis melo OX=3656 GN=LOC103497342 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 6.8e-69
Identity = 141/145 (97.24%), Postives = 143/145 (98.62%), Query Frame = 0


Query: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60
           MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS
Sbjct: 1   MSFFTGGGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFS 60

Query: 61  KDQPQINPSEATSSVDDGFMNEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120
           KDQPQ NPSE +SSVDDGF+NEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI
Sbjct: 61  KDQPQTNPSEVSSSVDDGFINEERSASEIQPTRNRTAELAASTGGALALAVLCNKALLPI 120

Query: 121 RIPITIALTPPIARLLARRGIVRSG 146
           RIPITIALTPPIARLLARRGIVRSG
Sbjct: 121 RIPITIALTPPIARLLARRGIVRSG 145

[Close]

BLAST of CsGy2G013540.1 vs. TrEMBL
Match: tr|A0A2I4GC55|A0A2I4GC55_9ROSI (uncharacterized protein LOC109006612 OS=Juglans regia OX=51240 GN=LOC109006612 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 6.5e-43
Identity = 107/147 (72.79%), Postives = 116/147 (78.91%), Query Frame = 0


Query: 7   GGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQI 66
           GGRFRELLKKYGKVA+GVHFSVS ASITGLYVAIKNNVDVESLL+KLHM    S  +   
Sbjct: 3   GGRFRELLKKYGKVALGVHFSVSAASITGLYVAIKNNVDVESLLEKLHMGGVGSSTKDH- 62

Query: 67  NPSEATSSVDDGFMNEER-SASEIQPT-------RNRTAELAASTGGALALAVLCNKALL 126
           +P E +SS  DGFM EE    SE Q T       RNRTAELAASTGGALALAVLCNKAL 
Sbjct: 63  SPPETSSSSSDGFMIEEDIPVSETQSTVVWEEKKRNRTAELAASTGGALALAVLCNKALF 122

Query: 127 PIRIPITIALTPPIARLLARRGIVRSG 146
           PIR+PITIALTPP+AR LARRGI ++G
Sbjct: 123 PIRVPITIALTPPVARFLARRGIGKNG 148

[Close]

BLAST of CsGy2G013540.1 vs. TrEMBL
Match: tr|A0A2I4HIM5|A0A2I4HIM5_9ROSI (uncharacterized protein LOC109018207 OS=Juglans regia OX=51240 GN=LOC109018207 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.5e-41
Identity = 104/147 (70.75%), Postives = 113/147 (76.87%), Query Frame = 0


Query: 7   GGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQI 66
           GGRFRELLKKYGKVA+GVHFSVS  SITGLYVAIKNNVDVESLL+KLHM    S  +   
Sbjct: 3   GGRFRELLKKYGKVALGVHFSVSAVSITGLYVAIKNNVDVESLLEKLHMGGVGSSTKDHA 62

Query: 67  NPSEATSSVDDGFMNE-ERSASEIQPT-------RNRTAELAASTGGALALAVLCNKALL 126
            P EA+    DGF+ E ER  SE Q T       RNR AEL ASTGGALALAVLCNKAL 
Sbjct: 63  -PPEASFYSSDGFVVENERPTSESQSTVVMEEKKRNRVAELTASTGGALALAVLCNKALF 122

Query: 127 PIRIPITIALTPPIARLLARRGIVRSG 146
           PIR+PITIALTPP+AR LARRGIV++G
Sbjct: 123 PIRVPITIALTPPMARFLARRGIVKNG 148

[Close]

BLAST of CsGy2G013540.1 vs. TrEMBL
Match: tr|A0A1R3JD21|A0A1R3JD21_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17357 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 3.5e-41
Identity = 98/141 (69.50%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 7   GGRFRELLKKYGKVAIGVHFSVSGASITGLYVAIKNNVDVESLLDKLHMDRFFSKDQPQI 66
           G RF+E +KKYGKVA+GVHFSVS ASITGLYVAIKNNVDVESL D+LH+   FSKDQ   
Sbjct: 6   GSRFKEFVKKYGKVALGVHFSVSAASITGLYVAIKNNVDVESLFDQLHLPG-FSKDQKNP 65

Query: 67  NPSEATSSVDDGFMNEERSASEI---QPTRNRTAELAASTGGALALAVLCNKALLPIRIP 126
           NPS   S V DGF+ EE+  + +   +  RNRTAELAASTGGALALAVLCNKAL P+R+P
Sbjct: 66  NPS-PQSPVPDGFLTEEQKPTVVVVEEKPRNRTAELAASTGGALALAVLCNKALFPVRVP 125

Query: 127 ITIALTPPIARLLARRGIVRS 145
           ITIALTPP+AR LARR I+++
Sbjct: 126 ITIALTPPVARFLARRKIIKN 144

The following BLAST results are available for this feature:

BLAST of CsGy2G013540.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147050.1	1.1e-70	100.00	PREDICTED: uncharacterized protein LOC101221163 [Cucumis sativus] >KGN61943.1 hy...	[more]
XP_008457709.1	1.0e-68	97.24	PREDICTED: uncharacterized protein LOC103497342 [Cucumis melo]	[more]
XP_023533856.1	4.4e-59	84.87	uncharacterized protein LOC111795580 [Cucurbita pepo subsp. pepo]	[more]
XP_022947464.1	2.8e-58	84.21	uncharacterized protein LOC111451320 [Cucurbita moschata]	[more]
XP_022146083.1	4.8e-58	84.21	uncharacterized protein LOC111015379 [Momordica charantia]	[more]

BLAST of CsGy2G013540.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20940.1	2.6e-34	57.66	Protein of unknown function (DUF1279)	[more]

BLAST of CsGy2G013540.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy2G013540.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJH5\|A0A0A0LJH5_CUCSA	7.3e-71	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270860 PE=4 SV=1	[more]
tr\|A0A1S3C646\|A0A1S3C646_CUCME	6.8e-69	97.24	uncharacterized protein LOC103497342 OS=Cucumis melo OX=3656 GN=LOC103497342 PE=...	[more]
tr\|A0A2I4GC55\|A0A2I4GC55_9ROSI	6.5e-43	72.79	uncharacterized protein LOC109006612 OS=Juglans regia OX=51240 GN=LOC109006612 P...	[more]
tr\|A0A2I4HIM5\|A0A2I4HIM5_9ROSI	3.5e-41	70.75	uncharacterized protein LOC109018207 OS=Juglans regia OX=51240 GN=LOC109018207 P...	[more]
tr\|A0A1R3JD21\|A0A1R3JD21_9ROSI	3.5e-41	69.50	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17357 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR009688	DUF1279

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G013540	CsGy2G013540	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G013540.1.exon.1	CsGy2G013540.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G013540.1.CDS.1	CsGy2G013540.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G013540.1	CsGy2G013540.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009688	Domain of unknown function DUF1279	PFAM	PF06916	DUF1279	coord: 9..130 e-value: 4.9E-26 score: 91.0
None	No IPR available	PANTHER	PTHR21377:SF0	PROTEIN FAM210B	coord: 8..142
None	No IPR available	PANTHER	PTHR21377	UNCHARACTERIZED	coord: 8..142