Cp4.1LG11g01760.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g01760.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Succinate dehydrogenase 5
Location	Cp4.1LG11 : 903145 .. 906775 (-)
Sequence length	2618

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTCTGAAATTGGATACTAACTCTTTTCTTTTACTACACCCGGTCATCGAACAGCCTCTTGCCTCGAGTTAGCTTTCAATTTTGCCGTTTCGAGGAAAAAACCGGAAGTCTCGGAGAAAATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCGTCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGGTATTCCTCCTAATTAGTAATACTTACAGCTATTTATTATAGATTCAAATCTCTCCTGATTAATATTGGAAAGAAGCGGAATTTCTGATGAAGTCATTCGCTATTCTTTATTCAACTTAATTAATGCTAGCTATTGATTTTCTCAGTTGGTTGCTGATATGCTTGTGTCTTACTGGTGATTAGTTAAATGTATAGTTCTTCTACCATGAATTGCACATACAGATGTAGTTCTTACAAATCAAAATTTTGCTTGCTATATTTGGACAGTAAACTGCTATGTTCTTTTCTGCATTAGTATTTATCATCAAGTCTTCATATTGTTCGCAATTTGTGGTTAGTTTTGTTGAAATGCCGAGTTTCTTTAAGTTCCCCTTATTGTTACTTTAAGCAATGCTTTGTCTTAAAGATTTTTAACAAAATAAATCTCGTATCAGAGAGAAGGAATATCAACTATAGTTTTAAAATCTGTGTAGAAATGTGCACTGTGCAAAGTTTTATTGTTTCAGCTCGCTGCAATGTGAAGTGACTGAATAACGTTGATAGACTGAATTAAATTATTTTTTCAGTATTATAATGTTTGAAAATATATCATATGCCTGTTTCTTCTGGTAAATTTCAGCAGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGTATTGGAAATTATATATTTATCAAATTAAATTTGTTTCCTCTCCAGCTTCTTATCAAGTGAAAACTTCCGAGTCTATCTACAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTAAAAAGCTTCTCGCTATATAGTTTGTTAATTGCTATTTTCAAATAAATAAGTTGGTGAAACGAGTATTGACCATTAAACAATTTTTGTTAACCATAGCTTCTATTTTATTTTACGACAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAAATTTGGCTTCTTTGAAAGTTTGGCTGTAGTTGCTAGCCTACTCTAGTTTGGGTGTTTGTTTTTCAATGTTTTATTGTCTGTCTTCTCTCAAATCCAATAAATTGTGGATTTAATGGCAATTGAATAAGATCTCACATTGACAAATGAGTTCTCGGAATTTAACTTCCTTGCATGTTTGCCAATTATTGGGTTCCTTTTACAAGTTTATATCATCAGTTTCATGTTTTTGCATTTATGTGTTCTTGAAGAGTTCTGTGATCTACGGAGGGGGCAACCTTAACTATGATTATTACTACTGCAACTGCATATTAGCGGTAATTAATTTAAGAGGGTTAATACATATGTTTATGAGGTGAAGAAGAGTTGAAAATTGTTTTTAATCAGATCAATAGCTTGAAGAATTTTGTTACTAAGAGGAGCCACGTTTTACTCTTCAATCTCAACGTTACTTCTGGCAGCAGCAAAATACAAAAAAACAGAACTTAGCACCGAATTTTGACATCATATCTTCACAATTTTGGTGCCCTTACTCCATAACCAAGATTCAGATGGCGACTTGGGCAGAGGTGGAAGTAACACCGCTTTCCTGCAAAGACCAAACGGCCATCCTTCACAATGAAACAATTCCTGTAAGATGGTGCGCCTCTTGAGATCTTCATCCAGAAAATTAAGACCATTTAAGCTCGAACATCGGGAAAAGTTGGCCTCTACAGAAAAGAATGCTTCCTTTGTTGCAGCACTTGAACATGTGAGAAAACTCTGAACTGAGTAGAACTCATCTCCTGTGTTATCTTCATTTCCAGGTTCATCTATCTTCTCAATCTCCATTGAAGTAATATATAATTCTTTGGTTGCAGGTGAGAAAACCCAGGAAAAGCTGTCTGACAGGTTAGTCTTTCGTCTCAACTTTTCCATTGCCCGACTTCTGATTTCCGATACAATTTCCTGAGAAATGGATATAAAACTTAGAGAAACAGATTTCATGTAAGGTGAAAGAGTAAACAAAAGGTTATATATCTGTTGATATGCGAGGATAAGTTGGTGAGTGAGTACTTCCTCTTCATCATCAAAGTCACTCGTTGGATAATCATCCTCTGCGTTGGAATTTGGCTGTGGTTTGCTAAAATTATGGCAGTTGCAGAGTACATCCTTCAAAGCACCTGCTAGAAAGCATTTCCTTGAAGGATTTGGTGGGTCTTCTTGATAAAAGACGCCCATATTGGAGAAGCAAGATTTTTTGGTTGGTTTATGAGCCAGAAACTATATAAAGAATTAATGCCCCCTTACTGAGGGTTCAAAATGGCTCCATTTTTGACAGTGCCTTCACAGCTTATTGAAAATAACGTTTTCTAATCCTTCGGTGTAAAGACAAAGTTAGAAGAGAGCACAAGACACTCCAACAAATGATGTTGAACTGCACTAAAGATTCCAGCACAAAGCTCACACTGTATTCTCATTCTTCCATTACTTCGAAAATTAATTGGCATGCTGTATGCTAATCTAACACCTACTTTTCTAGGCGCTTGGATTCTCTCTTAATGCTCAAGATTTGGGCGAATTGAGACATTAACCAACCAATATCTCCTACTTTTGACAACCTGGTCGGGGGGCGGCACTTCCAATATTAAAGCTCATGGGAGGAGAAGAGTACGAAAAACAAACAGCCGATTTAAAAGTTTGGTATCAATCTGGTATGCTGTCCATATACAAAGTTTGCTCGTTTTAAATGAAGAAGTTGATCAGTCTACTCTTTTTTTCCCCTAAAATGTGCTACTTCGTATCATAAGGCTCGTTTTAAATCAGTTCGACTTGATATCTTTCTTCTTTTAATTAAATTTTTTTTCCAAATCGAACTGATTAGATCTTTTCCTGAATTGGGTCTGCTCTTCTACCATTGGATTGGAAATGGTGTTAGTGGTGGGTGGTGTGCATTAAAGGTGAGACTCACTTTTCAGAAATTTAATTTG

mRNA sequence

TCCTCTGAAATTGGATACTAACTCTTTTCTTTTACTACACCCGGTCATCGAACAGCCTCTTGCCTCGAGTTAGCTTTCAATTTTGCCGTTTCGAGGAAAAAACCGGAAGTCTCGGAGAAAATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCGTCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAAATTTGGCTTCTTTGAAAGTTTGGCTTTTGGGTGTTTGTTTTTCAATGTTTTATTGTCTGTCTTCTCTCAAATCCAATAAATTGTGGATTTAATGGCAATTGAATAAGATCTCACATTGACAAATGAGTTCTCGGAATTTAACTTCCTTGCATGTTTGCCAATTATTGGGTTCCTTTTACAAGTTTATATCATCAGTTTCATGTTTTTGCATTTATGTGTTCTTGAAGAGTTCTGTGATCTACGGAGGGGGCAACCTTAACTATGATTATTACTACTGCAACTGCATATTAGCGGTAATTAATTTAAGAGGGTTAATACATATGTTTATGAGGTGAAGAAGAGTTGAAAATTGTTTTTAATCAGATCAATAGCTTGAAGAATTTTGTTACTCGTTACTTCTGGCAGCAGCAAAATACAAAAAAACAGAACTTAGCACCGAATTTTGACATCATATCTTCACAATTTTGGTGCCCTTACTCCATAACCAAGATTCAGATGGCGACTTGGGCAGAGGTGGAAGTAACACCGCTTTCCTGCAAAGACCAAACGGCCATCCTTCACAATGAAACAATTCCTGTAAGATGGTGCGCCTCTTGAGATCTTCATCCAGAAAATTAAGACCATTTAAGCTCGAACATCGGGAAAAGTTGGCCTCTACAGAAAAGAATGCTTCCTTTGTTGCAGCACTTGAACATGTGAGAAAACCCAGGAAAAGCTGTCTGACAGGTTAGTCTTTCGTCTCAACTTTTCCATTGCCCGACTTCTGATTTCCGATACAATTTCCTGAGAAATGGATATAAAACTTAGAGAAACAGATTTCATGTAAGGTGAAAGAGTAAACAAAAGGATAAGTTGGTGAGTGAGTACTTCCTCTTCATCATCAAAGTCACTCGTTGGATAATCATCCTCTGCGTTGGAATTTGGCTGTGGTTTGCTAAAATTATGGCAGTTGCAGAGTACATCCTTCAAAGCACCTGCTAGAAAGCATTTCCTTGAAGGATTTGGTGGGTCTTCTTGATAAAAGACGCCCATATTGGAGAAGCAAGATTTTTTGGTTGGTTTATGAGCCAGAAACTATATAAAGAATTAATGCCCCCTTACTGAGGGTTCAAAATGGCTCCATTTTTGACAGTGCCTTCACAGCTTATTGAAAATAACGTTTTCTAATCCTTCGGTGTAAAGACAAAGTTAGAAGAGAGCACAAGACACTCCAACAAATGATGTTGAACTGCACTAAAGATTCCAGCACAAAGCTCACACTGTATTCTCATTCTTCCATTACTTCGAAAATTAATTGGCATGCTGTATGCTAATCTAACACCTACTTTTCTAGGCGCTTGGATTCTCTCTTAATGCTCAAGATTTGGGCGAATTGAGACATTAACCAACCAATATCTCCTACTTTTGACAACCTGGTCGGGGGGCGGCACTTCCAATATTAAAGCTCATGGGAGGAGAAGAGTACGAAAAACAAACAGCCGATTTAAAAGTTTGGTATCAATCTGGTATGCTGTCCATATACAAAGTTTGCTCGTTTTAAATGAAGAAGTTGATCAGTCTACTCTTTTTTTCCCCTAAAATGTGCTACTTCGTATCATAAGGCTCGTTTTAAATCAGTTCGACTTGATATCTTTCTTCTTTTAATTAAATTTTTTTTCCAAATCGAACTGATTAGATCTTTTCCTGAATTGGGTCTGCTCTTCTACCATTGGATTGGAAATGGTGTTAGTGGTGGGTGGTGTGCATTAAAGGTGAGACTCACTTTTCAGAAATTTAATTTG

Coding sequence (CDS)

ATGGTGATTCTCAGATCATTATTGCGTTCTGTTCGCGCCAGATCTTACGTCATCGCCGGCGTCACGCACCGGAATTTACTACAGAGTCACCGTCAGGCTGCCCGAAGTTTCTTCTCTCTGTCGTCTCATCGTTCTTCTTTCTCAGATTTTCCGCTGAGAGTTTCTTCTGATTGTGGCTATCTATCTGGTGTAGCGCACGCTAGATTTTTTAGTGTTGATGTAGTTAATATGCCTACAATTGGAGATACCAAGCTTCAGAATGCTTTCAAGGATTTGATGGCTGCAAGTTGGGATAACCTTCCCGAGTCTGTTGTCTATGATGTAAAGGCAGCATTATCTGGAAGCACTGAAGACAAGGCTGGAAAGGAAATTGTGGAAAATGTTTTCAGAGCAGCTGAAGCGGCAGAGGATTTTGGTGATATACTTATCAACTTGAAAATGGAAATTGATGATAGCATTGGTGTCAGTGGCGAGGATGTTAAGCCTTTGTCTGATGAGCTTAAGAAGGCACTACAAACAGTTTATGATCGCTATACAGCCTACTTGGATGCATTTGGTCCCGAGGAAAACTATCTGCGAAAGAAAGTTGAAACCGAGTTAGGAACTAAGATGATATACTTGAAAATGAGATGCAGTGGCCTTGGATCCGAGTGGGGAAAGGTTTCTGTGCTGGGAACCTCTGGTCTATCAGGGTCATATGTCGAGCAAAGGGCATAA

Protein sequence

MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGYLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA

Homology

[Close]

BLAST of Cp4.1LG11g01760.1 vs. Swiss-Prot
Match: SDH5_ARATH (Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana GN=SDH5 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.6e-62
Identity = 126/223 (56.50%), Postives = 158/223 (70.85%), Query Frame = 1


Query: 27  LQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGYLS-----------GVAHARFFSVDVV 86
           ++ H    R+  +++ + S   D  +   S   Y S           G+   R FS DV 
Sbjct: 35  IEKHLSRHRTLITVAPNASVIGDVQINKGSFISYASVSRDLQYPRAMGMGQVRRFSEDVS 94

Query: 87  NMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVENVFRAAEAA 146
           +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+E ++NVFRAAEA 
Sbjct: 95  HMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAV 154

Query: 147 EDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGPEENYLRKK 206
           E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YLD+F PEE YL+KK
Sbjct: 155 EEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKK 214

Query: 207 VETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           VE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 215 VEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]

BLAST of Cp4.1LG11g01760.1 vs. Swiss-Prot
Match: SDH5_ORYSJ (Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH5 PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.8e-56
Identity = 103/171 (60.23%), Postives = 138/171 (80.70%), Query Frame = 1


Query: 68  RFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVEN 127
           R FS +  ++P I D ++++AFKDLMAASW  LP+S+V + K A S +T+DKAGKE + N
Sbjct: 61  RLFSSNEKHLPAISDPEVESAFKDLMAASWTGLPDSLVIEAKKAASKATDDKAGKEALLN 120

Query: 128 VFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGP 187
           VFRAAEA E+FG +L+ L+M +DD  G++GE+V PL   ++ A+++ Y RY  YL++FGP
Sbjct: 121 VFRAAEACEEFGGVLVTLRMALDDLCGITGENVGPLPGYIEDAVKSAYKRYMKYLESFGP 180

Query: 188 EENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           EENYLRKKVE ELGTKMI+LKMRCSG+GSEWGK++++GTSG+SGSYVE RA
Sbjct: 181 EENYLRKKVENELGTKMIHLKMRCSGVGSEWGKITLIGTSGISGSYVELRA 231

[Close]

BLAST of Cp4.1LG11g01760.1 vs. TrEMBL
Match: A0A0A0LP60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360050 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.0e-108
Identity = 206/237 (86.92%), Postives = 219/237 (92.41%), Query Frame = 1


Query: 2   VILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGYL 61
           VILRSLLRSVRARSY IAGVTHRNLLQS+ Q ARSFF LSSHR SFSD P RVSSDC Y 
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSSDCSYP 64

Query: 62  SGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAG 121
           SGV HAR+FS DVV+MPTI D KLQN FKDLMAASWD LPE+V+YDVK ALSGST+DKAG
Sbjct: 65  SGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKAG 124

Query: 122 KEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAY 181
           KEIVENVFRAAEAAE+FGD+LINLKMEIDDSIG+SGE+VKPLSDELKKAL TV++RY AY
Sbjct: 125 KEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIAY 184

Query: 182 LDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           LD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of Cp4.1LG11g01760.1 vs. TrEMBL
Match: A0A067L1L3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04300 PE=4 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 4.1e-73
Identity = 150/239 (62.76%), Postives = 187/239 (78.24%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHR-SSFSDFPLRVSSDCG 60
           M+++RS+ R+   RS   A +TH  L   H  A+RS FSLSS   S+ SDF         
Sbjct: 4   MMLVRSICRAASFRSSRFAAITHHQL--RHLLASRSIFSLSSPSVSTPSDFR------SS 63

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           +  G+   R+FS DV ++P I D +++ AFKDLMAASWD LP+ ++YDVK ALS  T+D 
Sbjct: 64  FAMGIGSTRYFSQDVSHLPAIQDPEIKRAFKDLMAASWDELPDPLIYDVKNALSKKTDDN 123

Query: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AG+EI++NVFRAAEA E+F  ILI+LKME+DDSIG+SGE+V+PLS EL KAL TVY+RY+
Sbjct: 124 AGQEILKNVFRAAEAVEEFSGILISLKMELDDSIGMSGENVRPLSSELTKALSTVYERYS 183

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           AYLDAFGP+E+YLRKKVETELG+KMIYLKMRCSGLGSEWGKV+VLGTSGL+GSYVEQR+
Sbjct: 184 AYLDAFGPDESYLRKKVETELGSKMIYLKMRCSGLGSEWGKVTVLGTSGLAGSYVEQRS 234

[Close]

BLAST of Cp4.1LG11g01760.1 vs. TrEMBL
Match: M5XHM0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010612mg PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 4.5e-72
Identity = 153/247 (61.94%), Postives = 186/247 (75.30%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQ-----AARSFFSLSSH--RSSFSDFPLR 60
           MV LRSL RS+ +RSY +A +  + L  S        AAR+ FS SS   +  FSD    
Sbjct: 4   MVALRSLYRSLSSRSYRVAALNQQLLCHSQPHHHNAGAARTLFSFSSPMVKDLFSD---- 63

Query: 61  VSSDCG--YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAA 120
              DC     +G+   RF+S D+ +MP I D +L N FKDLMAASWD LP+SVV+D KAA
Sbjct: 64  ---DCRSPLSTGLGSRRFYSDDLSHMPPIKDPELLNVFKDLMAASWDKLPDSVVHDAKAA 123

Query: 121 LSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKAL 180
           +S +T+D+ GKE V NVFRAAEA E+FG ++  LKME+DDSIG+SGE+VKPLSDE   AL
Sbjct: 124 VSKNTDDQTGKESVTNVFRAAEAVEEFGGMITTLKMELDDSIGLSGENVKPLSDEYVNAL 183

Query: 181 QTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSG 239
           +T+Y+RYTAYLDAFGPEE YLRKKVETELGTK+IYLKMRCSG+GSEWG+++VLGTSGLSG
Sbjct: 184 KTIYNRYTAYLDAFGPEETYLRKKVETELGTKLIYLKMRCSGIGSEWGRITVLGTSGLSG 243

[Close]

BLAST of Cp4.1LG11g01760.1 vs. TrEMBL
Match: A0A151S807_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_027283 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 7.7e-72
Identity = 148/240 (61.67%), Postives = 183/240 (76.25%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCG- 60
           M+ LRSL+RS+ +RSY             H  A+ S F+L     S    PL  SS+C  
Sbjct: 4   MMRLRSLIRSLSSRSY-------------HSFASTSHFALRPSLLSRPHNPLPSSSECRP 63

Query: 61  -YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTED 120
            +  G+   RF+S DV +MP I DT+L NAFKDLMA SW  LP+SVV+ VK ALS +T+D
Sbjct: 64  PFSMGLGRMRFYSEDVTHMPNIKDTELYNAFKDLMAESWSELPDSVVHGVKNALSKNTDD 123

Query: 121 KAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRY 180
           KAGKE+VENVFRAAEA E+FG IL++LK+EIDDSIG+SGEDVKPL D +K AL+T++DRY
Sbjct: 124 KAGKEVVENVFRAAEAVEEFGGILVSLKLEIDDSIGMSGEDVKPLPDHIKNALRTIFDRY 183

Query: 181 TAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           + YL++FGP+E+YLRKKVE ELG KMI+LKMRCSGLG+EWGKV+VLGTSGL+GSYVEQRA
Sbjct: 184 STYLNSFGPDESYLRKKVEIELGAKMIHLKMRCSGLGAEWGKVTVLGTSGLAGSYVEQRA 230

[Close]

BLAST of Cp4.1LG11g01760.1 vs. TrEMBL
Match: A0A061FCR8_THECC (Succinate dehydrogenase 5 OS=Theobroma cacao GN=TCM_033877 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.4e-70
Identity = 145/238 (60.92%), Postives = 178/238 (74.79%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGY 60
           M++LRS+ R+   RS   A V       +H   +RSFFS+SS  ++     L        
Sbjct: 4   MMMLRSIYRAACIRSSRFAAVAAT--AHNHHLGSRSFFSVSSPSAANQPRNLPSGGRSSL 63

Query: 61  LSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKA 120
              +   R+FS DV +MP I D ++QN FKDLMAASWD +P SVV D K ALS +T+DKA
Sbjct: 64  AVRLGSMRYFSEDVTHMPAIKDPEIQNVFKDLMAASWDEVPYSVVQDAKKALSKNTDDKA 123

Query: 121 GKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTA 180
           G+E ++N+FRAAEA E+FG +L+++KME+DDSIG+SGE+VKPLSDE   AL+TVY RYT 
Sbjct: 124 GQEALKNIFRAAEAVEEFGGVLMSMKMELDDSIGLSGENVKPLSDEFVNALRTVYQRYTT 183

Query: 181 YLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           YLDAFGP+E YLRKKVETELG+KMIYLKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 184 YLDAFGPDETYLRKKVETELGSKMIYLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 239

[Close]

BLAST of Cp4.1LG11g01760.1 vs. TAIR10
Match: AT1G47420.1 (AT1G47420.1 succinate dehydrogenase 5)

HSP 1 Score: 240.7 bits (613), Expect = 9.0e-64
Identity = 126/223 (56.50%), Postives = 158/223 (70.85%), Query Frame = 1


Query: 27  LQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGYLS-----------GVAHARFFSVDVV 86
           ++ H    R+  +++ + S   D  +   S   Y S           G+   R FS DV 
Sbjct: 35  IEKHLSRHRTLITVAPNASVIGDVQINKGSFISYASVSRDLQYPRAMGMGQVRRFSEDVS 94

Query: 87  NMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAGKEIVENVFRAAEAA 146
           +MP + D+ + NAFKDLMAA W  LP +VV D K A+S +T+DKAG+E ++NVFRAAEA 
Sbjct: 95  HMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAV 154

Query: 147 EDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAYLDAFGPEENYLRKK 206
           E+FG IL ++KMEIDDSIG+SGE VKPL +++  AL+T Y RY  YLD+F PEE YL+KK
Sbjct: 155 EEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKK 214

Query: 207 VETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           VE ELGTKMI+LKMRCSGLGSEWGKV+VLGTSGLSGSYVEQRA
Sbjct: 215 VEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

[Close]

BLAST of Cp4.1LG11g01760.1 vs. NCBI nr
Match: gi|449470049|ref|XP_004152731.1| (PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 1.5e-108
Identity = 206/237 (86.92%), Postives = 219/237 (92.41%), Query Frame = 1


Query: 2   VILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGYL 61
           VILRSLLRSVRARSY IAGVTHRNLLQS+ Q ARSFF LSSHR SFSD P RVSSDC Y 
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSFFYLSSHRPSFSDSPQRVSSDCSYP 64

Query: 62  SGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAG 121
           SGV HAR+FS DVV+MPTI D KLQN FKDLMAASWD LPE+V+YDVK ALSGST+DKAG
Sbjct: 65  SGVGHARYFSADVVSMPTIEDPKLQNVFKDLMAASWDKLPEAVIYDVKTALSGSTDDKAG 124

Query: 122 KEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAY 181
           KEIVENVFRAAEAAE+FGD+LINLKMEIDDSIG+SGE+VKPLSDELKKAL TV++RY AY
Sbjct: 125 KEIVENVFRAAEAAEEFGDMLINLKMEIDDSIGLSGENVKPLSDELKKALHTVHERYIAY 184

Query: 182 LDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           LD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of Cp4.1LG11g01760.1 vs. NCBI nr
Match: gi|659087792|ref|XP_008444638.1| (PREDICTED: uncharacterized protein At1g47420, mitochondrial [Cucumis melo])

HSP 1 Score: 386.7 bits (992), Expect = 2.9e-104
Identity = 201/237 (84.81%), Postives = 212/237 (89.45%), Query Frame = 1


Query: 2   VILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHRSSFSDFPLRVSSDCGYL 61
           VILRSLLRSVRARSY IAGVTHRNLLQS+ Q ARS F LSSHRSSFSD P RVS DC Y 
Sbjct: 5   VILRSLLRSVRARSYGIAGVTHRNLLQSNHQVARSVFYLSSHRSSFSDSPQRVSYDCSYP 64

Query: 62  SGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDKAG 121
           SGV HAR+FS DVV+MP I D KL   FKDLMAASWD LPE V+Y+ K ALSGST+DKAG
Sbjct: 65  SGVGHARYFSADVVSMPAIQDPKLNIVFKDLMAASWDKLPEPVIYEAKTALSGSTDDKAG 124

Query: 122 KEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYTAY 181
           KEIVENVFRAA AAE+FGDILINLKMEIDDSIG+SGE+VKPLSDELKKAL TV+DRY AY
Sbjct: 125 KEIVENVFRAAVAAEEFGDILINLKMEIDDSIGLSGENVKPLSDELKKALHTVHDRYIAY 184

Query: 182 LDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           LD+FGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA
Sbjct: 185 LDSFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 241

[Close]

BLAST of Cp4.1LG11g01760.1 vs. NCBI nr
Match: gi|802592627|ref|XP_012071684.1| (PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas])

HSP 1 Score: 282.7 bits (722), Expect = 5.8e-73
Identity = 150/239 (62.76%), Postives = 187/239 (78.24%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQAARSFFSLSSHR-SSFSDFPLRVSSDCG 60
           M+++RS+ R+   RS   A +TH  L   H  A+RS FSLSS   S+ SDF         
Sbjct: 4   MMLVRSICRAASFRSSRFAAITHHQL--RHLLASRSIFSLSSPSVSTPSDFR------SS 63

Query: 61  YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAALSGSTEDK 120
           +  G+   R+FS DV ++P I D +++ AFKDLMAASWD LP+ ++YDVK ALS  T+D 
Sbjct: 64  FAMGIGSTRYFSQDVSHLPAIQDPEIKRAFKDLMAASWDELPDPLIYDVKNALSKKTDDN 123

Query: 121 AGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKALQTVYDRYT 180
           AG+EI++NVFRAAEA E+F  ILI+LKME+DDSIG+SGE+V+PLS EL KAL TVY+RY+
Sbjct: 124 AGQEILKNVFRAAEAVEEFSGILISLKMELDDSIGMSGENVRPLSSELTKALSTVYERYS 183

Query: 181 AYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSGSYVEQRA 239
           AYLDAFGP+E+YLRKKVETELG+KMIYLKMRCSGLGSEWGKV+VLGTSGL+GSYVEQR+
Sbjct: 184 AYLDAFGPDESYLRKKVETELGSKMIYLKMRCSGLGSEWGKVTVLGTSGLAGSYVEQRS 234

[Close]

BLAST of Cp4.1LG11g01760.1 vs. NCBI nr
Match: gi|645226782|ref|XP_008220201.1| (PREDICTED: uncharacterized protein At1g47420, mitochondrial [Prunus mume])

HSP 1 Score: 281.2 bits (718), Expect = 1.7e-72
Identity = 155/247 (62.75%), Postives = 187/247 (75.71%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQ-----AARSFFSLSSHRSS--FSDFPLR 60
           MV LRSL RS+ +RSY +A +  + L QS        AAR+ FS SS  +   FSD    
Sbjct: 4   MVALRSLYRSLSSRSYRVAVLNQQLLCQSQPHHNNAGAARTLFSFSSPMAKDLFSD---- 63

Query: 61  VSSDCG--YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAA 120
              DC     +G+   RF+S D+ +MP I D +L N FKDLMAASWD LP+SVV+D KAA
Sbjct: 64  ---DCRSPLSTGLGSRRFYSDDLSHMPPIKDPELLNVFKDLMAASWDKLPDSVVHDAKAA 123

Query: 121 LSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKAL 180
           +S +T+D+ GKE V NVFRAAEA E+FG ++  LKME+DDSIG+SGE+VKPLSDE   AL
Sbjct: 124 VSKNTDDQTGKESVTNVFRAAEAVEEFGGMITTLKMELDDSIGLSGENVKPLSDEYVNAL 183

Query: 181 QTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSG 239
           +T+Y+RYTAYLDAFGPEE YLRKKVETELGTK+IYLKMRCSG+GSEWGK++VLGTSGLSG
Sbjct: 184 KTIYNRYTAYLDAFGPEETYLRKKVETELGTKLIYLKMRCSGIGSEWGKITVLGTSGLSG 243

[Close]

BLAST of Cp4.1LG11g01760.1 vs. NCBI nr
Match: gi|596205691|ref|XP_007223782.1| (hypothetical protein PRUPE_ppa010612mg [Prunus persica])

HSP 1 Score: 279.3 bits (713), Expect = 6.5e-72
Identity = 153/247 (61.94%), Postives = 186/247 (75.30%), Query Frame = 1


Query: 1   MVILRSLLRSVRARSYVIAGVTHRNLLQSHRQ-----AARSFFSLSSH--RSSFSDFPLR 60
           MV LRSL RS+ +RSY +A +  + L  S        AAR+ FS SS   +  FSD    
Sbjct: 4   MVALRSLYRSLSSRSYRVAALNQQLLCHSQPHHHNAGAARTLFSFSSPMVKDLFSD---- 63

Query: 61  VSSDCG--YLSGVAHARFFSVDVVNMPTIGDTKLQNAFKDLMAASWDNLPESVVYDVKAA 120
              DC     +G+   RF+S D+ +MP I D +L N FKDLMAASWD LP+SVV+D KAA
Sbjct: 64  ---DCRSPLSTGLGSRRFYSDDLSHMPPIKDPELLNVFKDLMAASWDKLPDSVVHDAKAA 123

Query: 121 LSGSTEDKAGKEIVENVFRAAEAAEDFGDILINLKMEIDDSIGVSGEDVKPLSDELKKAL 180
           +S +T+D+ GKE V NVFRAAEA E+FG ++  LKME+DDSIG+SGE+VKPLSDE   AL
Sbjct: 124 VSKNTDDQTGKESVTNVFRAAEAVEEFGGMITTLKMELDDSIGLSGENVKPLSDEYVNAL 183

Query: 181 QTVYDRYTAYLDAFGPEENYLRKKVETELGTKMIYLKMRCSGLGSEWGKVSVLGTSGLSG 239
           +T+Y+RYTAYLDAFGPEE YLRKKVETELGTK+IYLKMRCSG+GSEWG+++VLGTSGLSG
Sbjct: 184 KTIYNRYTAYLDAFGPEETYLRKKVETELGTKLIYLKMRCSGIGSEWGRITVLGTSGLSG 243

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g01760.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SDH5_ARATH	1.6e-62	56.50	Succinate dehydrogenase subunit 5, mitochondrial OS=Arabidopsis thaliana GN=SDH5...	[more]
SDH5_ORYSJ	3.8e-56	60.23	Succinate dehydrogenase subunit 5, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of Cp4.1LG11g01760.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP60_CUCSA	1.0e-108	86.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G360050 PE=4 SV=1	[more]
A0A067L1L3_JATCU	4.1e-73	62.76	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04300 PE=4 SV=1	[more]
M5XHM0_PRUPE	4.5e-72	61.94	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010612mg PE=4 SV=1	[more]
A0A151S807_CAJCA	7.7e-72	61.67	Uncharacterized protein OS=Cajanus cajan GN=KK1_027283 PE=4 SV=1	[more]
A0A061FCR8_THECC	1.4e-70	60.92	Succinate dehydrogenase 5 OS=Theobroma cacao GN=TCM_033877 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g01760.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47420.1	9.0e-64	56.50	succinate dehydrogenase 5	[more]

BLAST of Cp4.1LG11g01760.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449470049\|ref\|XP_004152731.1\|	1.5e-108	86.92	PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Cucumis sativus]	[more]
gi\|659087792\|ref\|XP_008444638.1\|	2.9e-104	84.81	PREDICTED: uncharacterized protein At1g47420, mitochondrial [Cucumis melo]	[more]
gi\|802592627\|ref\|XP_012071684.1\|	5.8e-73	62.76	PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]	[more]
gi\|645226782\|ref\|XP_008220201.1\|	1.7e-72	62.75	PREDICTED: uncharacterized protein At1g47420, mitochondrial [Prunus mume]	[more]
gi\|596205691\|ref\|XP_007223782.1\|	6.5e-72	61.94	hypothetical protein PRUPE_ppa010612mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025397	DUF4370

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045273	respiratory chain complex II
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g01760	Cp4.1LG11g01760	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g01760.1	Cp4.1LG11g01760.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g01760.1:five_prime_utr:001	Cp4.1LG11g01760.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g01760.1:cds:004	Cp4.1LG11g01760.1:cds:004	CDS
Cp4.1LG11g01760.1:cds:003	Cp4.1LG11g01760.1:cds:003	CDS
Cp4.1LG11g01760.1:cds:002	Cp4.1LG11g01760.1:cds:002	CDS
Cp4.1LG11g01760.1:cds:001	Cp4.1LG11g01760.1:cds:001	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g01760.1:three_prime_utr:005	Cp4.1LG11g01760.1:three_prime_utr:005	three_prime_UTR
Cp4.1LG11g01760.1:three_prime_utr:004	Cp4.1LG11g01760.1:three_prime_utr:004	three_prime_UTR
Cp4.1LG11g01760.1:three_prime_utr:003	Cp4.1LG11g01760.1:three_prime_utr:003	three_prime_UTR
Cp4.1LG11g01760.1:three_prime_utr:002	Cp4.1LG11g01760.1:three_prime_utr:002	three_prime_UTR
Cp4.1LG11g01760.1:three_prime_utr:001	Cp4.1LG11g01760.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025397	Protein of unknown function DUF4370	PFAM	PF14290	DUF4370	coord: 1..238 score: 9.5E
None	No IPR available	PANTHER	PTHR36139	FAMILY NOT NAMED	coord: 1..238 score: 4.8E
None	No IPR available	PANTHER	PTHR36139:SF1	SUBFAMILY NOT NAMED	coord: 1..238 score: 4.8E