Cp4.1LG09g00370.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g00370.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Vesicle transport protein, Got1/SFT2-like protein
Location	Cp4.1LG09 : 185038 .. 189093 (+)
Sequence length	1163

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTACACATTCACCTTGGAACCCGGGCTCGACTTCGAGAGAGAGAATGAACACGACTCCCTCTTTCTTCCTACTCTACCATCCAAAACAGGTTGATGGTTCAAAGTTCTAGAATAGGGTTCATTTGTCATCCATCATAGAATTAGAATTAAAATCTCATATTGGTTGAAAGTGCTTCATAACTCAAAATTGGCTCGAAAGTGCTTTATTGGTTGAGCCTCTAGCACGTGGGTTTGGTTTACCTACGAGCAATCAGCATTCCTCAAGTCCCACGTCTTCCAGCCAAAGGTCCACCGTCCTCTCGTATCCGAAACTTTGGTCGACACCTTCGAAGACCACGGGAGCTCACCCAATACTGAATTTCCATCAAAATGTGGAAGCTCGGCCTAGCCGTATTTGGCGATGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCGGAAGATCTTTGCTCTCTAACTCCTGTACAGGTACTTTAAACAACGATCAGAGAGCTCCACTTGTGGAAATTTTTATGGATTTTGCTTTTTGTTATTTATTATTATTTTTTTTTCAGTTTTCATACTGTGTTGGATTTTTGATGAACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGGTATGAACATTTAAGCGATTTCTTCATTTGATACAATGGCATATATGTTTTTTCTGTATGCATCTTGTGTAAATGGCGAACAGCTTTGATGATAATTTTGGATTTGGACCTAAGTTACGCTCTGGGTATGATCGGTAACTCGGGTTTTCTTTATTTCCATTGATTGTCTTGGGATGTAAATAAGATTTTTATTCTCTCACTATTCACTGGTTGGTCCTTGGGACTTCAAGAATGAATTAAAAAAGCACAACAAACAAGGAAGGTATTATTGATTTGGAATAGAAAGCCAAGGAATTTCCTCTAAGAAGGGAATGCTAAAGAAAAATCAAGTCGCTTGGTTCATTGGGAGATTGTTTCTACCTATTGAAAACGGAGGACTCGAGATTTGGATTTCAATGAAGGAAAACGGACCTTAGTTATCCAATGGATATGGCGGACTTTCTACCGATTCTGATGAGTTGTGGAACGAGACTCAATCCAATATCTATGGAGAGAACAGAGGAGGTTAAGTATAGGAGGGTTAGGTGTTACTGATTTATTGAAGCATTCACTAGAATTGATGTGGCAAATTGAAGGAAAACGTTTTACCTATTATTCTCTTTCTTTGTTGATTTCCAATCAGAGAGTTTTCATGTAATTCACCTTTAGGTGTTGGGAGTTTTTACTCCCTTTATTTCGTTCGCAATGAAATACGTTTCTCTTCTCAAAAAAATTGAAAGATGTTTTTCTCCTTAAAAGAAATGTAAGGAAAGCCTTATTCTAGAGACTTCTGGGTGGGTCGGAAAGGGAAGTCATCTGTTGGGAGGATTTGTTAGAATGTCTGTAGTTTCTGCAGACAAGAAATGACCGTAGGTGAGGCTTGGGAGGATGTTCTTGGAATATGACAACGTTGAGAACCTAACTGACCAGAAATTGGCATTGAGCAAGAAGTTGTTTGCAGCAATCATGTGAGATCCCACCTTGATTAGGGAGGAGAACGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGGAAGTCCGAAAGGGAAAGCCAAAAGAGGATAATACTGGCTAGCGGTGAGCTTGGACTGTTACAAAATGGTATCAAAGCCAGACACCGGGTGATGTGTCAACGAGGAGGCTGAGCCCCGAAGGGGGTGGACGCAAGGCGGTGTGCCACAAGGACGTTGGGCCACGAAAAGGGGTGGATTGGGGGGTCCCACATCGATTGGAGAAAGGAACGAGTGCCAGCAGGGATGTTGGTCTCCGAAGGGGGGGGGGGGGNGATCCCACATCGGTTGGGGAGGAGAACGAAACATTCTTTATAAGGGTGGGCTCCAAAGGGGAGTGAATTGTGAGATCCCACATCGGTTAGGGAGGAGAACGTTTTAATATCCGCTAGCGGTGGGCTTGAGTTGTTACAAATAAGGAAAGAAGCCCTGAGTAAGTTCCCTTCTTTGTGTGGACATTACGTGATGAGGTGTAAATTCAGCTGAGGGGAGGGATTCAAAGGGAACTCATATGGTTTTAAAACCCTGTTAGTGCATCCTTTGTTGCAAAGAAGAAAAGGGACAAAATCGCCTCTTTTTTCCCTGTTACTACTGTTAACTGTGTTGAGAATCTCAACTCAATAAAATGCTGTGCACTTATAAAAGTCAGTAAAAAAGGATGTTATCCCATTGTTATCGAGTAACAGACTTGAGACGAAAGCTAAAATCATATGGGTTAATGCATTAAAAGCAATTTGGGGTTTGCAGTTAGGTGGAAATACATGATTCACAAACAAAAATCTTCTTCAACATTGCATTATCTTAATCGGTAAACAATGAGCCTGTTCGAAAGTTAAAGATAATTGTCAATGACGTAATGCGTTACTGGCTATTTGTCCTGAACCAATGTCATACCCTTTTCACTGCACAGTATCAAACAGATGATTTTGTTCATTGTTCTTTCTTAATCAGTGATATTTTTATCTCATGTTTTTTCCCTCTGAAATCCCATTTGGATTTTTATGATTCTAGAATAACATACCCCATCTCTGTAGTCTTGCTAGCTCTTTTGCTGGAACTGCATTTGATGTGTTTGCTCCATTTTTTTCTTGATGCAGTCACTGCTTGTTTTTGCCAAGCCAATTAAATTTGCTGCACTCTTTACATTTGGCAATGTTCTGGCAGTCGGAAGGTTGGTTAACCAGCTAAATTAGACAGCTCTTTTATAACATTTTTTATGTCAGCAGTTAAGAAGTATTGCTAGGAGCAGCACTTTTGTTTACTTTCATTGCCAATTCATTGTTCTTGTTTGCATCTAATTCTTTTGTAATCTTCTATTTCATAAATTTCCTCAGAAGAAGTCTATTGGTGTACAAACAAAAGGACCCTTTAATGTTTTTTTTTTCACTGTGTTGTTCCTTTTCCTTGAGGTATTAATATTCTAAACCGCCTCTTATTTGGCAGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGGTAAGTTACAATTCAAAATGCATATGACATTTGACATCATGGGGGAAAACAGACTTTAATTCCTAGCACACACAGATATTCAATAAACAATCTTCTAGACATCTTTGATATTAGACAGTATGTTGGTCTATTCCACAAAATCTCCCATCAGACCGTTTTAGCATTGTTTTCCTTTAAATCTTGAATAAAACATGTATCAAAATGTTATATGAACTTGAAATGGACCTGCAAACAGTTAATGCCTCATCTTTTAGTTTGTAATTGTGTTTCTTTGCTATTTCTTTTTCATTTTTCAGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGTGCACTTATATGGTACGTTTAACGTTTTCATTGACCTTCCTCTGTTTGATTCAAGTTTCTTGAAACTAGAGGATAAAGGCTCTTCTTCGTTGGAAAATGTGTTTAATCATACCTTCCGAGACTTTTCTTGAATCTAAACTAGAATGGGCCATGACTTTCTTGGTTTATCCTGTTCCAGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAGACAATGAAACTTGCGATGATGACTGATGATTCAGTCTCTTCAAGATCTGGGATTTCCTTTTGTCCTTGTTTTTATTTTAGTGAGCACAAAACCAGTTGAAGATTTGTTTTTATTTTTATTTTTTATATTTATTTGTTTTTATTTGTCCACATAAATGTATAATCCAAAGCCAGTTCAATGCTTGTGCTAATCTTCTAATGTAACAGCATTCTTTTCGCAGAATTAACTTAGT

mRNA sequence

TGTACACATTCACCTTGGAACCCGGGCTCGACTTCGAGAGAGAGAATGAACACGACTCCCTCTTTCTTCCTACTCTACCATCCAAAACAGGTTGATGGTTCAAAGTTCTAGAATAGGGTTCATTTGTCATCCATCATAGAATTAGAATTAAAATCTCATATTGGTTGAAAGTGCTTCATAACTCAAAATTGGCTCGAAAGTGCTTTATTGGTTGAGCCTCTAGCACGTGGGTTTGGTTTACCTACGAGCAATCAGCATTCCTCAAGTCCCACGTCTTCCAGCCAAAGGTCCACCGTCCTCTCGTATCCGAAACTTTGGTCGACACCTTCGAAGACCACGGGAGCTCACCCAATACTGAATTTCCATCAAAATGTGGAAGCTCGGCCTAGCCGTATTTGGCGATGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCGGAAGATCTTTGCTCTCTAACTCCTGTACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGTTATCCAATGGATATGGCGGACTTTCTACCGATTCTGATGAGTTGTGGAACGAGACTCAATCCAATATCTATGGAGAGAACAGAGGAGTTAGGTGGAAATACATGATTCACAAACAAAAATCTTCTTCAACATTGCATTATCTTAATCGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGTGCACTTATATGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAGACAATGAAACTTGCGATGATGACTGATGATTCAGTCTCTTCAAGATCTGGGATTTCCTTTTGTCCTTGTTTTTATTTTAGTGAGCACAAAACCAGTTGAAGATTTGTTTTTATTTTTATTTTTTATATTTATTTGTTTTTATTTGTCCACATAAATGTATAATCCAAAGCCAGTTCAATGCTTGTGCTAATCTTCTAATGTAACAGCATTCTTTTCGCAGAATTAACTTAGT

Coding sequence (CDS)

ATGTGGAAGCTCGGCCTAGCCGTATTTGGCGATGATGAAGAGCGTGGTCAGAGCTTGCTGGACGAAGATTCGGAAGATCTTTGCTCTCTAACTCCTGTACAGAGACTATACGGGTTTGGAGGCTGCTTGACCGGGGGCGTGGTCTGCATGATCGTGTTATCCAATGGATATGGCGGACTTTCTACCGATTCTGATGAGTTGTGGAACGAGACTCAATCCAATATCTATGGAGAGAACAGAGGAGTTAGGTGGAAATACATGATTCACAAACAAAAATCTTCTTCAACATTGCATTATCTTAATCGCACAGCTTTCCTCTTTGGACCTGGGCAACAAATGCGAATGATGTTTGATTCAGTTCGTATATATGCAACTGCTATTTACCTGGGATGTGTTGTGCTAGCTCTTATTTGTGCTCTCTTGATCCACAATAAGATCTTGACAGTGATTGCGATGACAAGTGAGATATGTGCACTTATATGGTATAGTTTGAGCTATATTCCATTTGCCCGGAGGATGGTCTCTGAATTGATGATCCGATTTTGTGACACAGAACTATAG

Protein sequence

MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGLSTDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL

Homology

[Close]

BLAST of Cp4.1LG09g00370.1 vs. Swiss-Prot
Match: SFT2B_HUMAN (Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.7e-08
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           +  T FL GP +Q++ MF+  R+ AT + L C  L L  A   HNK L +I    +  AL
Sbjct: 77  IGSTIFLMGPVKQLKRMFEPTRLIATIMVLLCFALTLCSAFWWHNKGLALIFCILQSLAL 136

Query: 160 IWYSLSYIPFARRMVSE 177
            WYSLS+IPFAR  V +
Sbjct: 137 TWYSLSFIPFARDAVKK 153

[Close]

BLAST of Cp4.1LG09g00370.1 vs. Swiss-Prot
Match: SFT2B_MOUSE (Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.6e-07
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           +  T FL GP +Q++ MF+  R+ AT + L C  L L C+  + NK L +I    +  AL
Sbjct: 77  IGSTVFLMGPLKQLKRMFEPTRLIATILVLLCFALTL-CSAFLWNKGLALIFCILQSLAL 136

Query: 160 IWYSLSYIPFARRMVSE 177
            WYSLSYIP+AR  V +
Sbjct: 137 TWYSLSYIPYARDAVKK 152

[Close]

BLAST of Cp4.1LG09g00370.1 vs. Swiss-Prot
Match: SFT2A_MOUSE (Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.7e-07
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           L  T FL GP +Q++ MF++ R+ AT I L C+V  L  AL    K L ++    +  ++
Sbjct: 76  LASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSM 135

Query: 160 IWYSLSYIPFARRMV 175
            WYSLSYIP+AR  V
Sbjct: 136 TWYSLSYIPYARDAV 150

[Close]

BLAST of Cp4.1LG09g00370.1 vs. Swiss-Prot
Match: SFT2A_RAT (Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.7e-07
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 1


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           L  T FL GP +Q++ MF++ R+ AT I L C+V  L  AL    K L ++    +  ++
Sbjct: 76  LASTCFLMGPVKQLKKMFETTRLLATIIMLLCLVFTLCAALWWRKKGLALLFCILQFLSM 135

Query: 160 IWYSLSYIPFARRMV 175
            WYSLSYIP+AR  V
Sbjct: 136 TWYSLSYIPYARDAV 150

[Close]

BLAST of Cp4.1LG09g00370.1 vs. Swiss-Prot
Match: SFT2B_RAT (Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.2e-06
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 100 LNRTAFLFGPGQQMRMMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICAL 159
           +  T FL GP +Q++ MF+  R+ AT + L   VL L C+  + NK L +I    +  AL
Sbjct: 75  IGSTMFLMGPLKQLKRMFEPTRLIATILVLLFFVLTL-CSAFLWNKGLALIFCILQSLAL 134

Query: 160 IWYSLSYIPFARRMVSE 177
            WYSLSYIP+AR  V +
Sbjct: 135 TWYSLSYIPYARDAVKK 150

[Close]

BLAST of Cp4.1LG09g00370.1 vs. TrEMBL
Match: A0A0A0LC39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603050 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.7e-50
Identity = 122/186 (65.59%), Postives = 131/186 (70.43%), Query Frame = 1


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKL   VF D EER QSLLDEDSEDLCSLT VQRLY FGGCLTGGVVCMI+       L
Sbjct: 1   MWKLSEGVFVD-EERSQSLLDEDSEDLCSLTAVQRLYAFGGCLTGGVVCMIL------SL 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
              +  L              V + +          +  +  T FLFGP QQ+RMMFDSV
Sbjct: 61  LVFAKPL-----------KLAVLFAF--------GNVLAVGSTTFLFGPRQQIRMMFDSV 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RI ATAIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSLSYIPFARRMVS+LMIR
Sbjct: 121 RILATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVSQLMIR 160

Query: 181 FCDTEL 187
           FCDTEL
Sbjct: 181 FCDTEL 160

[Close]

BLAST of Cp4.1LG09g00370.1 vs. TrEMBL
Match: A0A059DEZ9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01469 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.2e-41
Identity = 94/186 (50.54%), Postives = 122/186 (65.59%), Query Frame = 1


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKL  ++FG +EE    +L EDS+ +CSL+P+QR+Y FG CL  G+VCM +        
Sbjct: 1   MWKLSQSLFGGEEEGQDEVLAEDSDGICSLSPMQRVYAFGACLLVGLVCMFL-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        ++    + +++  +     +   L  +  T FL G  QQMRMMFDS 
Sbjct: 61  -------------SLIVFAKPIKFAVVF----TCGNLLAVGSTVFLIGAAQQMRMMFDST 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           R++ATAIYLGCV LALICAL IH+K+LT+IA+  EICALIWYSLSYIPFARRMVS+LM+R
Sbjct: 121 RVFATAIYLGCVALALICALWIHSKVLTIIAIIIEICALIWYSLSYIPFARRMVSDLMVR 161

Query: 181 FCDTEL 187
            CDTEL
Sbjct: 181 LCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370.1 vs. TrEMBL
Match: B7FHE2_MEDTR (Got1/SFT2-like vescicle transporter family protein OS=Medicago truncatula GN=MTR_1g026920 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.0e-39
Identity = 96/187 (51.34%), Postives = 122/187 (65.24%), Query Frame = 1


Query: 1   MWK-LGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGG 60
           MWK LG ++ GD+EE+ +SLL E S  L SLT  QR+YGF  CL  G+  M++    +  
Sbjct: 1   MWKKLGESLSGDNEEQEESLLGEGSGGLSSLTTTQRMYGFAACLIAGLALMLLSMIVFA- 60

Query: 61  LSTDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDS 120
                               + +++  +     +   L  +  TAFL GP QQM MMFD 
Sbjct: 61  --------------------KPIKFAVLF----TFGNLSAVGSTAFLLGPAQQMEMMFDP 120

Query: 121 VRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMI 180
           VR++ATAIYLGCVV+ALICALLIH+K+LT++A+  EICAL+WYSLSYIPFARRMVSELMI
Sbjct: 121 VRVFATAIYLGCVVIALICALLIHSKVLTLLAIIIEICALMWYSLSYIPFARRMVSELMI 162

Query: 181 RFCDTEL 187
           R CDTEL
Sbjct: 181 RLCDTEL 162

[Close]

BLAST of Cp4.1LG09g00370.1 vs. TrEMBL
Match: A0A067E770_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031391mg PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.0e-39
Identity = 94/186 (50.54%), Postives = 121/186 (65.05%), Query Frame = 1


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKL   V GD EER +S L+++S+ +CSL+  QR+Y F  CL  G+VCM +        
Sbjct: 1   MWKLKQLVAGD-EEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFL-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        +I    R +++  +     +   L  +  TAF+ GP QQ+ MMFDS 
Sbjct: 61  -------------SIIVFVRPIKFAILF----TFGNLLAVGSTAFVIGPAQQINMMFDSA 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RIYAT +YL CVV+ALICALLIH+KILT++A+  EICAL+WYSLSYIPFARRM+SELMIR
Sbjct: 121 RIYATTVYLVCVVIALICALLIHSKILTILAIICEICALLWYSLSYIPFARRMISELMIR 160

Query: 181 FCDTEL 187
            CDTEL
Sbjct: 181 LCDTEL 160

[Close]

BLAST of Cp4.1LG09g00370.1 vs. TrEMBL
Match: V4U832_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006104mg PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.7e-39
Identity = 93/186 (50.00%), Postives = 121/186 (65.05%), Query Frame = 1


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKL   V GD EER +S L+++S+ +CSL+  QR+Y F  CL  G+VCM +        
Sbjct: 1   MWKLKQLVAGD-EEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFL-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        +I    R +++  +     +   L  +  TAF+ GP QQ+ MMFDS 
Sbjct: 61  -------------SIIVFVRPIKFAILF----TFGNLLAVGSTAFVIGPAQQINMMFDSA 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RIYAT +YL CV++ALICALLIH+KILT++A+  EICAL+WYSLSYIPFARRM+SELMIR
Sbjct: 121 RIYATTVYLVCVLIALICALLIHSKILTILAIICEICALLWYSLSYIPFARRMISELMIR 160

Query: 181 FCDTEL 187
            CDTEL
Sbjct: 181 LCDTEL 160

[Close]

BLAST of Cp4.1LG09g00370.1 vs. TAIR10
Match: AT5G24170.1 (AT5G24170.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-36
Identity = 91/177 (51.41%), Postives = 110/177 (62.15%), Query Frame = 1


Query: 10  GDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGLSTDSDELWN 69
           GD +    S L++ SE LC+L+  QR+YGF   L  G++ M  LS    G+      L+ 
Sbjct: 12  GDGDGTTDSFLEDGSEGLCALSTTQRMYGFAASLATGLLLMF-LSMIVFGIPIKFALLF- 71

Query: 70  ETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSVRIYATAIYL 129
            T  N+                        +  TAFL GP QQM MMFD VR  AT+IY+
Sbjct: 72  -TFGNVLA----------------------IGSTAFLMGPEQQMSMMFDPVRFLATSIYI 131

Query: 130 GCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTEL 187
           GCVV+ALICALLIH+KILTV+A+  EICALIWYSLSYIPFARRMVSE+MIR CDTEL
Sbjct: 132 GCVVVALICALLIHSKILTVLAILCEICALIWYSLSYIPFARRMVSEIMIRLCDTEL 163

[Close]

BLAST of Cp4.1LG09g00370.1 vs. TAIR10
Match: AT5G23550.1 (AT5G23550.1 Got1/Sft2-like vescicle transport protein family)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-25
Identity = 70/174 (40.23%), Postives = 94/174 (54.02%), Query Frame = 1


Query: 12  DEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGLSTDSDELWNET 71
           DEE   S + ED    C+LT  QR YGF  CL+ G+ C ++    +          +N  
Sbjct: 27  DEESSLSFM-EDLNRNCALTTKQRFYGFAICLSAGLTCTLLSMLVF----------FNPV 86

Query: 72  QSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSVRIYATAIYLGC 131
           +  I                 +   L  L  TAFL GP +Q+ MM D  RIYATA+YL  
Sbjct: 87  KFGI---------------TFTLGNLMALGSTAFLIGPQRQVTMMLDPARIYATALYLAS 146

Query: 132 VVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIRFCDTE 186
           +++AL CAL + NK+LT++A+  E   LIWYSLSYIPFAR MVS++ +   DTE
Sbjct: 147 IIIALFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMVSKIFMTCFDTE 174

[Close]

BLAST of Cp4.1LG09g00370.1 vs. NCBI nr
Match: gi|659082018|ref|XP_008441622.1| (PREDICTED: vesicle transport protein SFT2B [Cucumis melo])

HSP 1 Score: 209.1 bits (531), Expect = 6.4e-51
Identity = 120/192 (62.50%), Postives = 131/192 (68.23%), Query Frame = 1


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIV------LS 60
           MWKL   VF DDEER QSLLDEDSEDLCSLTPVQRLY FGGCLTGGVVCMI+        
Sbjct: 1   MWKLSDGVFVDDEERSQSLLDEDSEDLCSLTPVQRLYAFGGCLTGGVVCMILSLLVFAKP 60

Query: 61  NGYGGLSTDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMR 120
             +  L T  + L   + + ++G                               PGQQ+R
Sbjct: 61  LKFAVLFTFGNVLAVGSTAFLFG-------------------------------PGQQIR 120

Query: 121 MMFDSVRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMV 180
           MMFDSVRI+ATAIYLGCVVLALICAL IHNKILTV AM SEICALIWYSLSYIPFARRMV
Sbjct: 121 MMFDSVRIFATAIYLGCVVLALICALWIHNKILTVFAMISEICALIWYSLSYIPFARRMV 161

Query: 181 SELMIRFCDTEL 187
           S+LM+RFCDTEL
Sbjct: 181 SQLMVRFCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370.1 vs. NCBI nr
Match: gi|449455944|ref|XP_004145710.1| (PREDICTED: vesicle transport protein SFT2B [Cucumis sativus])

HSP 1 Score: 207.2 bits (526), Expect = 2.4e-50
Identity = 122/186 (65.59%), Postives = 131/186 (70.43%), Query Frame = 1


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKL   VF D EER QSLLDEDSEDLCSLT VQRLY FGGCLTGGVVCMI+       L
Sbjct: 1   MWKLSEGVFVD-EERSQSLLDEDSEDLCSLTAVQRLYAFGGCLTGGVVCMIL------SL 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
              +  L              V + +          +  +  T FLFGP QQ+RMMFDSV
Sbjct: 61  LVFAKPL-----------KLAVLFAF--------GNVLAVGSTTFLFGPRQQIRMMFDSV 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           RI ATAIYLGCVVLALICAL IHNKILTVIA+ SEICALIWYSLSYIPFARRMVS+LMIR
Sbjct: 121 RILATAIYLGCVVLALICALWIHNKILTVIAIISEICALIWYSLSYIPFARRMVSQLMIR 160

Query: 181 FCDTEL 187
           FCDTEL
Sbjct: 181 FCDTEL 160

[Close]

BLAST of Cp4.1LG09g00370.1 vs. NCBI nr
Match: gi|702242983|ref|XP_010049189.1| (PREDICTED: vesicle transport protein SFT2B [Eucalyptus grandis])

HSP 1 Score: 176.0 bits (445), Expect = 6.0e-41
Identity = 94/186 (50.54%), Postives = 122/186 (65.59%), Query Frame = 1


Query: 1   MWKLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGGL 60
           MWKL  ++FG +EE    +L EDS+ +CSL+P+QR+Y FG CL  G+VCM +        
Sbjct: 1   MWKLSQSLFGGEEEGQDEVLAEDSDGICSLSPMQRVYAFGACLLVGLVCMFL-------- 60

Query: 61  STDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDSV 120
                        ++    + +++  +     +   L  +  T FL G  QQMRMMFDS 
Sbjct: 61  -------------SLIVFAKPIKFAVVF----TCGNLLAVGSTVFLIGAAQQMRMMFDST 120

Query: 121 RIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMIR 180
           R++ATAIYLGCV LALICAL IH+K+LT+IA+  EICALIWYSLSYIPFARRMVS+LM+R
Sbjct: 121 RVFATAIYLGCVALALICALWIHSKVLTIIAIIIEICALIWYSLSYIPFARRMVSDLMVR 161

Query: 181 FCDTEL 187
            CDTEL
Sbjct: 181 LCDTEL 161

[Close]

BLAST of Cp4.1LG09g00370.1 vs. NCBI nr
Match: gi|645258117|ref|XP_008234734.1| (PREDICTED: vesicle transport protein SFT2B [Prunus mume])

HSP 1 Score: 174.1 bits (440), Expect = 2.3e-40
Identity = 96/187 (51.34%), Postives = 123/187 (65.78%), Query Frame = 1


Query: 1   MW-KLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGG 60
           MW KL  ++   +EE G+  LDE+S+  C+L+  QR+YGF  CL  G+VCM +       
Sbjct: 1   MWAKLNQSMLEGNEEGGEGFLDEESDGFCALSATQRMYGFAACLLAGLVCMFL------- 60

Query: 61  LSTDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDS 120
                         ++    + +++  +     +   L  +  TAFLFGPGQQMRMMFDS
Sbjct: 61  --------------SLIVFAKPIKFAVLF----TFGNLLAVGSTAFLFGPGQQMRMMFDS 120

Query: 121 VRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMI 180
           VR+YATAIYLGCVV+ALICAL IH+KILT+IA+  E+CALIWYSLSYIPFARR+VS LMI
Sbjct: 121 VRVYATAIYLGCVVIALICALWIHSKILTIIAIICEVCALIWYSLSYIPFARRIVSNLMI 162

Query: 181 RFCDTEL 187
           R  DTEL
Sbjct: 181 RLFDTEL 162

[Close]

BLAST of Cp4.1LG09g00370.1 vs. NCBI nr
Match: gi|1009122809|ref|XP_015878202.1| (PREDICTED: vesicle transport protein SFT2B [Ziziphus jujuba])

HSP 1 Score: 173.7 bits (439), Expect = 3.0e-40
Identity = 97/187 (51.87%), Postives = 126/187 (67.38%), Query Frame = 1


Query: 1   MW-KLGLAVFGDDEERGQSLLDEDSEDLCSLTPVQRLYGFGGCLTGGVVCMIVLSNGYGG 60
           MW KL  ++ G D++  +S  D++S+ LCSL+  QR+YGF  CL+ G+V MI+       
Sbjct: 1   MWQKLNQSLSGVDDDGRESFFDDESDGLCSLSATQRMYGFAACLSAGLVLMIL------- 60

Query: 61  LSTDSDELWNETQSNIYGENRGVRWKYMIHKQKSSSTLHYLNRTAFLFGPGQQMRMMFDS 120
                         ++    + +++  +     +   +  +  TAFL G GQQMRMMFDS
Sbjct: 61  --------------SLIVFAKPIKFAILF----TFGNVLAVGSTAFLLGLGQQMRMMFDS 120

Query: 121 VRIYATAIYLGCVVLALICALLIHNKILTVIAMTSEICALIWYSLSYIPFARRMVSELMI 180
           VRIYATAIYLGCVV+ALICAL IH+KILT++A+ SEICAL WYSLSYIPFARRMVSELMI
Sbjct: 121 VRIYATAIYLGCVVIALICALWIHSKILTIVAIISEICALFWYSLSYIPFARRMVSELMI 162

Query: 181 RFCDTEL 187
           R+CDTEL
Sbjct: 181 RWCDTEL 162

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g00370.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SFT2B_HUMAN	6.7e-08	44.16	Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1 SV=1	[more]
SFT2B_MOUSE	2.6e-07	42.86	Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1 SV=1	[more]
SFT2A_MOUSE	5.7e-07	42.67	Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=1 SV=1	[more]
SFT2A_RAT	5.7e-07	42.67	Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1 PE=2 SV=1	[more]
SFT2B_RAT	2.2e-06	42.86	Vesicle transport protein SFT2B OS=Rattus norvegicus GN=Sft2d2 PE=2 SV=1	[more]

BLAST of Cp4.1LG09g00370.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC39_CUCSA	1.7e-50	65.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G603050 PE=4 SV=1	[more]
A0A059DEZ9_EUCGR	4.2e-41	50.54	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01469 PE=4 SV=1	[more]
B7FHE2_MEDTR	3.0e-39	51.34	Got1/SFT2-like vescicle transporter family protein OS=Medicago truncatula GN=MTR...	[more]
A0A067E770_CITSI	3.0e-39	50.54	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031391mg PE=4 SV=1	[more]
V4U832_9ROSI	6.7e-39	50.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006104mg PE=4 SV=1	[more]

BLAST of Cp4.1LG09g00370.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24170.1	1.6e-36	51.41	Got1/Sft2-like vescicle transport protein family	[more]
AT5G23550.1	8.4e-25	40.23	Got1/Sft2-like vescicle transport protein family	[more]

BLAST of Cp4.1LG09g00370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659082018\|ref\|XP_008441622.1\|	6.4e-51	62.50	PREDICTED: vesicle transport protein SFT2B [Cucumis melo]	[more]
gi\|449455944\|ref\|XP_004145710.1\|	2.4e-50	65.59	PREDICTED: vesicle transport protein SFT2B [Cucumis sativus]	[more]
gi\|702242983\|ref\|XP_010049189.1\|	6.0e-41	50.54	PREDICTED: vesicle transport protein SFT2B [Eucalyptus grandis]	[more]
gi\|645258117\|ref\|XP_008234734.1\|	2.3e-40	51.34	PREDICTED: vesicle transport protein SFT2B [Prunus mume]	[more]
gi\|1009122809\|ref\|XP_015878202.1\|	3.0e-40	51.87	PREDICTED: vesicle transport protein SFT2B [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0016192	vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR011691	Vesicle_transpt_SFT2
IPR007305	Vesicle_transpt_Got1/SFT2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG09g00370	Cp4.1LG09g00370	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g00370.1	Cp4.1LG09g00370.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g00370.1:five_prime_utr:001	Cp4.1LG09g00370.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g00370.1:cds:001	Cp4.1LG09g00370.1:cds:001	CDS
Cp4.1LG09g00370.1:cds:002	Cp4.1LG09g00370.1:cds:002	CDS
Cp4.1LG09g00370.1:cds:003	Cp4.1LG09g00370.1:cds:003	CDS
Cp4.1LG09g00370.1:cds:004	Cp4.1LG09g00370.1:cds:004	CDS
Cp4.1LG09g00370.1:cds:005	Cp4.1LG09g00370.1:cds:005	CDS
Cp4.1LG09g00370.1:cds:006	Cp4.1LG09g00370.1:cds:006	CDS
Cp4.1LG09g00370.1:cds:007	Cp4.1LG09g00370.1:cds:007	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG09g00370.1:three_prime_utr:001	Cp4.1LG09g00370.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007305	Vesicle transport protein, Got1/SFT2-like	PFAM	PF04178	Got1	coord: 99..177 score: 3.6
IPR011691	Vesicle transport protein, SFT2-like	PANTHER	PTHR23137	UNCHARACTERIZED	coord: 71..185 score: 7.4E-40coord: 11..52 score: 7.4
None	No IPR available	PANTHER	PTHR23137:SF6	PROTEIN F27D4.7	coord: 71..185 score: 7.4E-40coord: 11..52 score: 7.4