Cp4.1LG05g11520.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g11520.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG05 : 7818506 .. 7819348 (+)
Sequence length	451

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGGAAACACGTAGAGCATAGAATAGGAATATATTTTGATGGAAATTTCCCTCATTCCAAGAAATCTATAACCCAAATTCCAATTCCTTTCATCTCCAACACCATTCAATTTCTATATATTCTATTCCCACTCTTTTCCCTCAACAATTTAACCATTCTTCTCGATTTCTCCTCTTCAAATTGAATCAAATTCCTCGCCGGAATCCTCCCCCATTATCATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGTTAGCCTGACACACCGCCGTTTGTTCAATTACTAATGGGTCCTCTGTTTCAGAGGTTTTCATTCATTGATTGATTCATTAATTCTTGTAGGCTTCCCTCCCAAGGACGCTTACCCTCCCCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCCCCTCCTCCGCCGCCCCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGGTCAGTCGCTTCCTCTGTTCTTGTAATCTAATGGAATTTCTTTAATTCCTCTAATTAACTACTAATTCTCTGTCTTTACATACTTAACTTCAGAGATTAATTACTAGAAAATTAATAATTTAAAATGTGATTAACAGAAGAATTTTATCCAATATATAATAAAATAAATGTATTATATGATTGTTTTGCAGTTTAGCAGCACTTTGCTGTTGCTGTCTCTTGGATGCTTGCTTCTGATAAAGATGGATGGATGGATGATCTTAAGCACTCAACTTATTATTCTAATTTCATTGCATTGTAGTATCACCATCATC

mRNA sequence

TGATGGAAACACGTAGAGCATAGAATAGGAATATATTTTGATGGAAATTTCCCTCATTCCAAGAAATCTATAACCCAAATTCCAATTCCTTTCATCTCCAACACCATTCAATTTCTATATATTCTATTCCCACTCTTTTCCCTCAACAATTTAACCATTCTTCTCGATTTCTCCTCTTCAAATTGAATCAAATTCCTCGCCGGAATCCTCCCCCATTATCATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGCTTCCCTCCCAAGGACGCTTACCCTCCCCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCCCCTCCTCCGCCGCCCCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGTATCACCATCATC

Coding sequence (CDS)

ATGAGCTACTACGACCACCAACAGCCGCCGGTTGGGGCTCCGCCGCCACAAGGCTTCCCTCCCAAGGACGCTTACCCTCCCCCTGGGTACCCCGTTCAGGGCTACCCTACGGCTCAAGGGTACCCCCCTCCTCCGCCGCCCCCGGTGTATGCCCCACAGTACGCTCCGACTACTCAGCAGCCTCCTCCCAAGGACAAAACTGGTTGCCTTGAAGGATGTATCACCATCATC

Protein sequence

MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQPPPKDKTGCLEGCITII

Homology

[Close]

BLAST of Cp4.1LG05g11520.1 vs. Swiss-Prot
Match: CYT1A_ARATH (Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thaliana GN=At2g41420 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 4.6e-11
Identity = 46/90 (51.11%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYP---------TAQGYPPPPPP 60
          MS Y+  QPPVG PPPQG+P    PKDAYPP GYP QGYP           QGYP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PVYAPQYAPTTQQPPPKDKTGCLEGCITII 78
          P YAPQY P  Q    +   G LEGC+  +
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEGCLAAL 88

[Close]

BLAST of Cp4.1LG05g11520.1 vs. TrEMBL
Match: A0A0A0LJA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271480 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.0e-25
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP   P YAP   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 60

Query: 61 PPPKDK-TGCLEGCITII 78
          PPPK++ TGCLEGC+  +
Sbjct: 61 PPPKNETTGCLEGCLAAL 75

[Close]

BLAST of Cp4.1LG05g11520.1 vs. TrEMBL
Match: A0A067GUB6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034959mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-17
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG+PPKDAYPPPGYPVQG   AQGYPPP     YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPPQ----YAPQYA----Q 60

Query: 61 PPPKDKTGCLEGCITII 78
          PPP+ +TG LEGC+  +
Sbjct: 61 PPPRQETGFLEGCLAAL 68

[Close]

BLAST of Cp4.1LG05g11520.1 vs. TrEMBL
Match: V4RWV0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026875mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG+PPKDAYPPPGYPVQG   AQGYPP      YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPSQ----YAPQYA----Q 60

Query: 61 PPPKDKTGCLEGCITII 78
          PPP+ +TG LEGC+  +
Sbjct: 61 PPPRQETGFLEGCLAAL 68

[Close]

BLAST of Cp4.1LG05g11520.1 vs. TrEMBL
Match: A0A067DGG2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034942mg PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-16
Identity = 52/77 (67.53%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG+PPKDAYPPPGYPVQG   AQGYPP      YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPSQ----YAPQYA----Q 60

Query: 61 PPPKDKTGCLEGCITII 78
          PPP+ +TG LEGC+  +
Sbjct: 61 PPPRQETGFLEGCLAAL 68

[Close]

BLAST of Cp4.1LG05g11520.1 vs. TrEMBL
Match: A0A061E1I0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007244 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 5.6e-16
Identity = 55/83 (66.27%), Postives = 60/83 (72.29%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFPP----KDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAP 60
          MSYY+ QQPPVG PPPQG+PP    KDAYPPPGYP QGYP  QGYPP   PP YAPQYA 
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYAKDAYPPPGYPPQGYP--QGYPPQGYPPPYAPQYA- 60

Query: 61 TTQQPPPKDK--TGCLEGCITII 78
            Q PPP+ K  TG LEGC+  +
Sbjct: 61 --QAPPPQQKQSTGFLEGCLAAL 78

[Close]

BLAST of Cp4.1LG05g11520.1 vs. TAIR10
Match: AT2G41420.1 (AT2G41420.1 proline-rich family protein)

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-12
Identity = 46/90 (51.11%), Postives = 51/90 (56.67%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYP---------TAQGYPPPPPP 60
          MS Y+  QPPVG PPPQG+P    PKDAYPP GYP QGYP           QGYP    P
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGYPQQGYP 60

Query: 61 PVYAPQYAPTTQQPPPKDKTGCLEGCITII 78
          P YAPQY P  Q    +   G LEGC+  +
Sbjct: 61 PPYAPQYPPPPQHQQQQSSPGFLEGCLAAL 88

[Close]

BLAST of Cp4.1LG05g11520.1 vs. TAIR10
Match: AT5G67600.1 (AT5G67600.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-11
Identity = 42/77 (54.55%), Postives = 47/77 (61.04%), Query Frame = 1


Query: 4  YDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPT---AQGYPPPPPPPVYAPQYAPTTQQ 63
          Y  +Q PVGAPPPQG+PPKD YPP GYP  GYP    AQGYP    PP   PQY   +Q 
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP---PQY---SQA 61

Query: 64 PPPKDKTGCLEGCITII 78
          P  K   G LEGC+  +
Sbjct: 62 PQQKQNAGMLEGCLAAL 72

[Close]

BLAST of Cp4.1LG05g11520.1 vs. TAIR10
Match: AT3G49845.1 (AT3G49845.1 unknown protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.7e-08
Identity = 47/117 (40.17%), Postives = 54/117 (46.15%), Query Frame = 1


Query: 1   MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPV---------------------------Q 60
           MSY D Q P V APPPQG+PPK+ YPP GYP                            Q
Sbjct: 1   MSYQDPQHP-VSAPPPQGYPPKEGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQ 60

Query: 61  GYPTAQGYPPPPPPPVYAPQYAPTTQQPPP-------------KDKTGCLEGCITII 78
           GYP AQGYPPP  P  + PQY P    PPP             KD  G +EGC+ ++
Sbjct: 61  GYP-AQGYPPPQYPQGHPPQY-PYQGPPPPHYGQAPPKNKKDKKDSGGFMEGCLAML 114

[Close]

BLAST of Cp4.1LG05g11520.1 vs. NCBI nr
Match: gi|778669828|ref|XP_011649307.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis sativus])

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-25
Identity = 63/78 (80.77%), Postives = 67/78 (85.90%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP   P YAP   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 60

Query: 61 PPPKDK-TGCLEGCITII 78
          PPPK++ TGCLEGC+  +
Sbjct: 61 PPPKNETTGCLEGCLAAL 75

[Close]

BLAST of Cp4.1LG05g11520.1 vs. NCBI nr
Match: gi|659115789|ref|XP_008457737.1| (PREDICTED: CYSTM1 family protein A-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 3.3e-25
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 1


Query: 1   MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
           MSYYDHQQPPVGAPPPQGFPPKD+YPPPGYPVQGYP AQGYPPPPPPP   P YAP   Q
Sbjct: 73  MSYYDHQQPPVGAPPPQGFPPKDSYPPPGYPVQGYPAAQGYPPPPPPP---PGYAPQYSQ 132

Query: 61  PPPK-DKTGCLEGCITII 78
           PPPK + TGCLEGC+  +
Sbjct: 133 PPPKNESTGCLEGCLAAL 147

[Close]

BLAST of Cp4.1LG05g11520.1 vs. NCBI nr
Match: gi|802550735|ref|XP_012093141.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 56/90 (62.22%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYPTA---QGYPP---PPPPPVY 60
          MSYY+ QQPPVG PPPQG+P    PKDAYPPPGYP QGYP     QGYPP   PPPPP Y
Sbjct: 1  MSYYNQQQPPVGVPPPQGYPPEGYPKDAYPPPGYPPQGYPQGYPPQGYPPQGYPPPPPAY 60

Query: 61 APQYAPTTQQPPPKDKT---GCLEGCITII 78
          APQY     QPPP+ ++   GCLEGC+  +
Sbjct: 61 APQYG----QPPPQQQSSGPGCLEGCLAAL 86

[Close]

BLAST of Cp4.1LG05g11520.1 vs. NCBI nr
Match: gi|568824124|ref|XP_006466453.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Citrus sinensis])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60
          MSYY+  QPPVGAPPPQG+PPKDAYPPPGYPVQG   AQGYPPP     YAPQYA    Q
Sbjct: 1  MSYYNQNQPPVGAPPPQGYPPKDAYPPPGYPVQG-GYAQGYPPPQ----YAPQYA----Q 60

Query: 61 PPPKDKTGCLEGCITII 78
          PPP+ +TG LEGC+  +
Sbjct: 61 PPPRQETGFLEGCLAAL 68

[Close]

BLAST of Cp4.1LG05g11520.1 vs. NCBI nr
Match: gi|1009145343|ref|XP_015890283.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Ziziphus jujuba])

HSP 1 Score: 95.5 bits (236), Expect = 4.3e-17
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = 1


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGY-PTAQGYPPPP-PPPVYAPQYAPTT 60
          MSYY++QQPPVG PPPQG+PPKDAYPPPGYP QGY P  QGYPP   PP  YAPQYA   
Sbjct: 1  MSYYNNQQPPVGVPPPQGYPPKDAYPPPGYPPQGYPPPQQGYPPQGYPPQGYAPQYA--- 60

Query: 61 QQPPPK--DKTGCLEGCITII 78
           QPPP+  + TGCLEGC+  +
Sbjct: 61 -QPPPRQDNTTGCLEGCLAAL 77

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g11520.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CYT1A_ARATH	4.6e-11	51.11	Cysteine-rich and transmembrane domain-containing protein A OS=Arabidopsis thali...	[more]

BLAST of Cp4.1LG05g11520.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA6_CUCSA	1.0e-25	80.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271480 PE=4 SV=1	[more]
A0A067GUB6_CITSI	3.0e-17	68.83	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034959mg PE=4 SV=1	[more]
V4RWV0_9ROSI	2.5e-16	67.53	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026875mg PE=4 SV=1	[more]
A0A067DGG2_CITSI	2.5e-16	67.53	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034942mg PE=4 SV=1	[more]
A0A061E1I0_THECC	5.6e-16	66.27	Uncharacterized protein OS=Theobroma cacao GN=TCM_007244 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g11520.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41420.1	2.6e-12	51.11	proline-rich family protein	[more]
AT5G67600.1	4.9e-11	54.55	unknown protein	[more]
AT3G49845.1	1.7e-08	40.17	unknown protein	[more]

BLAST of Cp4.1LG05g11520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669828\|ref\|XP_011649307.1\|	1.5e-25	80.77	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
gi\|659115789\|ref\|XP_008457737.1\|	3.3e-25	79.49	PREDICTED: CYSTM1 family protein A-like [Cucumis melo]	[more]
gi\|802550735\|ref\|XP_012093141.1\|	4.3e-17	62.22	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Jat...	[more]
gi\|568824124\|ref\|XP_006466453.1\|	4.3e-17	68.83	PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Citrus s...	[more]
gi\|1009145343\|ref\|XP_015890283.1\|	4.3e-17	67.90	PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Ziziphus...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g11520	Cp4.1LG05g11520	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g11520.1:five_prime_utr:001	Cp4.1LG05g11520.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g11520.1:cds:001	Cp4.1LG05g11520.1:cds:001	CDS
Cp4.1LG05g11520.1:cds:002	Cp4.1LG05g11520.1:cds:002	CDS
Cp4.1LG05g11520.1:cds:003	Cp4.1LG05g11520.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g11520.1	Cp4.1LG05g11520.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 45..74 score: 1.
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 1..74 score: 7.5
None	No IPR available	PANTHER	PTHR31568:SF3	CYSTM1 FAMILY PROTEIN A-RELATED	coord: 1..74 score: 7.5