CmoCh16G012630.1 (mRNA) Cucurbita moschata (Rifu)

NameCmoCh16G012630.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description50S ribosomal protein L28
LocationCmo_Chr16 : 9006969 .. 9009789 (+)
Sequence length890
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTATGAACCTCTTTTCTTTCCTTTATTTTTTTCAAAATCTATGGTCGATTCTCTCTGAATTTGGATGCATTTTATTGATTTAATTCCGTGGTTCGAAACCATTAGTCCCTTTCCCAATATGAGCATAGCTTAACGGTTAAAGGATATCATGTTAAGCCCAAGCCTGCCGCTAGCCGATATTGAACTCTTTGAACTTTCCCTTTTGAGCTTCCCCTCAAGGTTTTAAAACGCGTCCACTATGGAGAGGTTTCCACACCCTTGTAAGAAATGTTTCGTTCTCCTCTCCAACCAATGTGGGATCTCATAATCCACCCCCTTGGAGGTTAGCGTCCTTGCTCTAACACACTGCCCAGTGTTTGATTCTGATACCATTTGTAATAGCCTAAGTCCACCTCTAACAAATATTGTCTTCTTTGAGATTTCCCTACTGGGCTTCCCCTCAAGGTTTTAAAATGCATCTACTATGGAGAAGTTTCTACACTCTTGTAAGAAATGTTTCATCCCCCTCTCCAACCAATGTAGGATCTCACAATCCACCTCCTTGGAGGTTAGTGTGACACACCGCCCAGTGTCTGGCTCTGATACCATTTATAATAGCCTAAGCCCACTGCTAACAGATATTGTTCTCTTTGAGATTTCCCTGCTGGGCTTCCTCTCAAGGTTTTAAAACGTGTCTACTAGGGAGAGATTTCCACACCCTTGTAAGGAATGTTTCGTTCCCCTCTCCAACCAAGGTGGGATCTCATAATCCACCCCCTTGGAGGTCAGCGTCCTCACTGACACATCACCCGGTGTCTGGCTCTGATACCATTTGTAATAGTCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTAGGATTTCTCTGTTGGGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCTCCTCTTCAACCAATGTGAGATCTCACACATCAACCTCTACCTTTTTTTTTTTTTCCTTCGAACTAGTTCAAATTTCCACACCCACACCAAAAAAAAAAAAAGAGAGAGAGAGAGAGATCTTTAGTCCCTTTTAATTGCATAGCTAGATTTATTGTTTTTTACAATTGCAAGTGAAGGCGCCATAAATGAATAAATTCATAGCATCAAAGACATTTGGCAGAAAATTCTTGCTGTTACTATTTCAAAACTTTACGTCTTTGTGTTCATGCTTCTGATTTTTTCTTATCTGTTTGTTGCTGCCTTCTTGATGAGTGTTTGGATTTTGGATGCGGGGTTAGCATATGAATCAATTGTTCTGCTAAAATTCTTAACCACACTACTTGATTACGACTTGTAGTTAGAATCAAGTGGAGATGTTGTAATTGCTTTGCTCTGAGGTTTTTATGCCCCACTCCTTTTGTCAATCTATGAACATGTGGAAGAACCCTAAGATAGGGTGATTGGGGGCGTAAAGTCGGGCTTCAGCGTGTGTCTCGCTTCCTAAGCCCAACAGCCCCGACCCTCTGTTTGACAATCCAAGTTCGAGAAACCAACCGGCTCAAACAACATCCTACTATTCAACCCCTCTGCTCACTATTTCGACCCAAGCTTCCTAAACTTGTGCCCCCAAATACAGAACCTGTGAACCCAAATGGTCCATTAGATTTTGGGAAGAGAAAATGAACTTATAGTGGTGTTTCCTTCTGTGTGTGAACGTTATTGGTTTTTGCTTTATGTTTGTAGCCTTATATTTACATGTCAAGGGTATGCCTCTCTTGCTCTTGTATTAAGAAATTCGAGAGCACGATATAATAATTTTGTTTTCTTCCTTTGTTTCGGCCTTATGTCATATAAGGGTTCGGTGCGTTTTACGATTATTTACGATTATTTTGTCATGCTATCAATTTTCAATTTTGGAGTATTAGCCGTTATGTGCTGGTGCTTATAGGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAATTAATCATAGGACACCTTTTTTCCAACTTGGGAATTCTTCAAGCCTTGACTTGTTCCTACCTTTTCCAAGAGTTGTTTACTCTCATCTTCACTGAAATCCTTTGTAGCTTATTTGGTTTAATGTTAACTACTTCAGATAGAAATGAGAATTGTTTTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTGGGCTTAATATATGATTTCCCCAT

mRNA sequence

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAATTAATCATAGGACACCTTTTTTCCAACTTGGGAATTCTTCAAGCCTTGACTTGTTCCTACCTTTTCCAAGAGTTGTTTACTCTCATCTTCACTGAAATCCTTTGTAGCTTATTTGGTTTAATGTTAACTACTTCAGATAGAAATGAGAATTGTTTTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTGGGCTTAATATATGATTTCCCCAT

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAA
BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 9.1e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1

Query: 30  KKCIPDSKI----VMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G++ G  +QFGN ISE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.0e-10
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1

Query: 43  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN++S     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-09
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1

Query: 43  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN +S    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1

Query: 50  GRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +Q GN +S    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTEIGLFWKAKIEKLYE 137
            LL  P  +++ +     K +I+K  E
Sbjct: 69  ALLDIPDARLNQDARRV-KKQIQKAIE 93

BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 1

Query: 8   MMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKS 67
           M  K+L+K+    L   VK  +    P SK   N     ++ G   + GN      G+K+
Sbjct: 1   MASKLLRKLAYPTLP--VKGKIYD--PFSKFQQN-----LYGGSKTEAGNNKIPKFGHKT 60

Query: 68  RRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKT 115
           RR W PN   K L+S +L+    + VT+  LR IDK GG+DEYL+K+
Sbjct: 61  RRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKEGGLDEYLVKS 98

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 4.0e-99
Identity = 189/220 (85.91%), Postives = 202/220 (91.82%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWK+KIE LYEELG+MEVVFFSPEDE KFEQ F++LKLSERAAR+EARR+MYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TQHDQIEEGQADRAGSSEE-VAGSEGGSHGDDGPQQCVAN 220
            + +QI+EG     GSSEE  A SEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.2e-87
Identity = 165/200 (82.50%), Postives = 187/200 (93.50%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSK+VMNRAKRG++AGRHIQFGNRIS
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIEK+YEELGQMEVVFFSPEDEAKFEQGF++LKL+ERAAR++ARR+MYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TQHDQIEEGQA-DRAGSSEE 200
            + ++IE  ++ D  G++ E
Sbjct: 181 GKLEEIENRRSHDGTGNAGE 200

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: V4UM17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.6e-87
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRI 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS+IVMNRAKRG+FAG+HIQFGNR+
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RRNWKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQHDQIEEGQADRAGSSEEVAG-SEGGSHGDDGPQQCVANA 221
           S++  QIE+G AD   ++EE A     G   +  P+  VAN+
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS 222

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: A0A067FV36_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.6e-87
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRI 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS+IVMNRAKRG+FAG+HIQFGNR+
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RRNWKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQHDQIEEGQADRAGSSEEVAG-SEGGSHGDDGPQQCVANA 221
           S++  QIE+G AD   ++EE A     G   +  P+  VAN+
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS 222

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: A0A059AZQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.0e-86
Identity = 166/215 (77.21%), Postives = 188/215 (87.44%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S+IVM RA RGIFAGRHI+FGN++S
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GL+WK+KIEKLYEELG+MEVVFFSPEDE KFEQGF+ LKL ERAAR++ RR+MYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 181 TQHDQIEEGQA-DRAGSSEEVAGSEGGSHGDDGPQ 215
            +     EGQA D+A   E     +G  H DD  Q
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADDHDQ 215

BLAST of CmoCh16G012630.1 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 283.9 bits (725), Expect = 8.6e-77
Identity = 141/208 (67.79%), Postives = 167/208 (80.29%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+K+VM RAKRG++AGRHIQ+GNR+S
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARR--RMYG 180
           TE+GL+WK K+E  Y ELGQMEV FF+PEDEAK EQGF+DL ++++ AR+EARR  R  G
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTFRKKG 180

Query: 181 SSTQHDQIEEGQADRAGSSEEVAGSEGG 207
              + D  EE   +  G SE     + G
Sbjct: 181 GGNKGD--EEASIEGGGGSESHQEDDNG 206

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 5.7e-99
Identity = 189/220 (85.91%), Postives = 202/220 (91.82%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWK+KIE LYEELG+MEVVFFSPEDE KFEQ F++LKLSERAAR+EARR+MYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TQHDQIEEGQADRAGSSEE-VAGSEGGSHGDDGPQQCVAN 220
            + +QI+EG     GSSEE  A SEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 5.9e-96
Identity = 188/221 (85.07%), Postives = 200/221 (90.50%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIE LYEELG+MEVVFFSPEDEAKFEQ F+DLKLSERAARKEARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 TQH-DQIEEGQADRAGSSEEVAGSEGGSHG-DDGPQQCVAN 220
           T   +QI+EG  D   SSEE A SEGGSHG DD  QQ VAN
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAASSEGGSHGDDDSHQQWVAN 221

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|823122027|ref|XP_012469124.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii])

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 165/200 (82.50%), Postives = 187/200 (93.50%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSK+VMNRAKRG++AGRHIQFGNRIS
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIEK+YEELGQMEVVFFSPEDEAKFEQGF++LKL+ERAAR++ARR+MYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TQHDQIEEGQA-DRAGSSEE 200
            + ++IE  ++ D  G++ E
Sbjct: 181 GKLEEIENRRSHDGTGNAGE 200

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 163/199 (81.91%), Postives = 184/199 (92.46%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMK I+KKVGE N+APGVK+SLKKCIPDSKIVMNRAKRGIFAGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIEKLYEELGQ EVVFFSPEDE KFEQ F++L+L+E+AA+KEAR++M+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 181 TQHDQIEEGQADRAGSSEE 200
            +  Q+EEG+A    + EE
Sbjct: 181 GKLKQMEEGEAKNEETKEE 199

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|567916350|ref|XP_006450181.1| (hypothetical protein CICLE_v10009422mg [Citrus clementina])

HSP 1 Score: 330.5 bits (846), Expect = 2.3e-87
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 1

Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRI 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS+IVMNRAKRG+FAG+HIQFGNR+
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RRNWKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQHDQIEEGQADRAGSSEEVAG-SEGGSHGDDGPQQCVANA 221
           S++  QIE+G AD   ++EE A     G   +  P+  VAN+
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS 222

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RM24_YEAST9.1e-1242.0554S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC... [more]
RL28_MAGMM5.0e-1043.6650S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1... [more]
RL28_GLUDA2.5e-0938.7550S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037... [more]
RL28_RHOCS2.1e-0837.9350S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN... [more]
RM24_SCHPO2.7e-0836.4554S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
Match NameE-valueIdentityDescription
A0A0A0L1P8_CUCSA4.0e-9985.91Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1[more]
A0A0D2PMQ4_GOSRA1.2e-8782.50Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1[more]
V4UM17_9ROSI1.6e-8774.32Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1[more]
A0A067FV36_CITSI1.6e-8774.32Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1[more]
A0A059AZQ3_EUCGR1.0e-8677.21Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT4G31460.18.6e-7767.79 Ribosomal L28 family[more]
Match NameE-valueIdentityDescription
gi|449456779|ref|XP_004146126.1|5.7e-9985.91PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus][more]
gi|659095444|ref|XP_008448584.1|5.9e-9685.07PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo][more]
gi|823122027|ref|XP_012469124.1|1.7e-8782.50PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii][more]
gi|1009136027|ref|XP_015885311.1|1.7e-8781.91PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba][more]
gi|567916350|ref|XP_006450181.1|2.3e-8774.32hypothetical protein CICLE_v10009422mg [Citrus clementina][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001383Ribosomal_L28
IPR026569Ribo_L28/L24
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh16G012630CmoCh16G012630gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh16G012630.1CmoCh16G012630.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G012630.1.exon.2CmoCh16G012630.1.exon.2exon
CmoCh16G012630.1.exon.1CmoCh16G012630.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G012630.1.CDS.1CmoCh16G012630.1.CDS.1CDS
CmoCh16G012630.1.CDS.2CmoCh16G012630.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh16G012630.1.three_prime_UTR.1CmoCh16G012630.1.three_prime_UTR.1three_prime_UTR


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001383Ribosomal protein L28HAMAPMF_00373Ribosomal_L28coord: 42..110
score: 14
IPR026569Ribosomal protein L28/L24PANTHERPTHR1352839S RIBOSOMAL PROTEIN L28, MITOCHONDRIALcoord: 23..177
score: 6.3
IPR026569Ribosomal protein L28/L24PFAMPF00830Ribosomal_L28coord: 47..103
score: 9.9
NoneNo IPR availableGENE3DG3DSA:2.30.170.40coord: 43..118
score: 2.6
NoneNo IPR availableunknownSSF143800L28p-likecoord: 43..119
score: 3.92