CmoCh07G001700.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTTATCTCAATTGGGAAGCAAGTCGGAGCTGAGAGAGATGGTTTCTGCATTAGAAAACAGATTCAACTCACGCAAGAAGCTACGCCTTGTTCGATCTCTGGGCACCCATGAATCCCCTGTAATTCCTAAGACATTCTGTTTTGGTGATTTTGTTTGTTGGGGCCATAAATGATGGAATTCTCTATTTATGCAGGGAAAACAGAGGAGTGGGTTCTGGAACTCTGTTCTGTTCATTCATAAGCTTAAGCTGAAGCTGGAAGCAATTGAAAGAGAATACTTGAAGTCTATAAAGGAACTCCATGCGCTCAAGGTCCTTGTTGTTTTAGAATTGTTGCTATGTATGTGTTTATGGTAAATTGAATCTTCCATTGATGCTTGATGAACAGGAAGTGAAGGTGGAGAAGATGGGAGAAGAGATTAAAGTGAAAGTGAGATGCGAGAAGGGAGAGAATAGATTGGTTTCAGTATTAGAAGCATTGGAGAGAATGAGATTGAACGTGGTGGAAGCCAGAGTTTCGTGTAGTGAATGCTTTTCAATGGAGGCCATTGCTGTAGCTGAAGATGATCAGTTGGTGAATGTAAAAGATATAACTGAAGCTATTAATGTAGCCATTGATGCCTAATCATAAGCTTCACTTCCTTACCCACCACTTGAATCACAATGTTTCTTGATATCTCAAC ACTTATCTCAATTGGGAAGCAAGTCGGAGCTGAGAGAGATGGTTTCTGCATTAGAAAACAGATTCAACTCACGCAAGAAGCTACGCCTTGTTCGATCTCTGGGCACCCATGAATCCCCTGGAAAACAGAGGAGTGGGTTCTGGAACTCTGTTCTGTTCATTCATAAGCTTAAGCTGAAGCTGGAAGCAATTGAAAGAGAATACTTGAAGTCTATAAAGGAACTCCATGCGCTCAAGGAAGTGAAGGTGGAGAAGATGGGAGAAGAGATTAAAGTGAAAGTGAGATGCGAGAAGGGAGAGAATAGATTGGTTTCAGTATTAGAAGCATTGGAGAGAATGAGATTGAACGTGGTGGAAGCCAGAGTTTCGTGTAGTGAATGCTTTTCAATGGAGGCCATTGCTGTAGCTGAAGATGATCAGTTGGTGAATGTAAAAGATATAACTGAAGCTATTAATGTAGCCATTGATGCCTAATCATAAGCTTCACTTCCTTACCCACCACTTGAATCACAATGTTTCTTGATATCTCAAC ATGGTTTCTGCATTAGAAAACAGATTCAACTCACGCAAGAAGCTACGCCTTGTTCGATCTCTGGGCACCCATGAATCCCCTGGAAAACAGAGGAGTGGGTTCTGGAACTCTGTTCTGTTCATTCATAAGCTTAAGCTGAAGCTGGAAGCAATTGAAAGAGAATACTTGAAGTCTATAAAGGAACTCCATGCGCTCAAGGAAGTGAAGGTGGAGAAGATGGGAGAAGAGATTAAAGTGAAAGTGAGATGCGAGAAGGGAGAGAATAGATTGGTTTCAGTATTAGAAGCATTGGAGAGAATGAGATTGAACGTGGTGGAAGCCAGAGTTTCGTGTAGTGAATGCTTTTCAATGGAGGCCATTGCTGTAGCTGAAGATGATCAGTTGGTGAATGTAAAAGATATAACTGAAGCTATTAATGTAGCCATTGATGCCTAA
BLAST of CmoCh07G001700.1 vs. TrEMBL
Match: A0A0A0KHW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G519710 PE=4 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 2.6e-46 Identity = 111/154 (72.08%), Postives = 124/154 (80.52%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. TrEMBL
Match: E5GC31_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 7.5e-46 Identity = 110/154 (71.43%), Postives = 124/154 (80.52%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. TrEMBL
Match: A0A061GDH3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029655 PE=4 SV=1) HSP 1 Score: 117.5 bits (293), Expect = 1.4e-23 Identity = 75/154 (48.70%), Postives = 105/154 (68.18%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. TrEMBL
Match: A0A0D2TJN6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G160900 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 3.1e-23 Identity = 72/153 (47.06%), Postives = 100/153 (65.36%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. TrEMBL
Match: A0A0B0MJP3_GOSAR (Transcription factor bHLH35-like protein OS=Gossypium arboreum GN=F383_26226 PE=4 SV=1) HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22 Identity = 72/154 (46.75%), Postives = 99/154 (64.29%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. TAIR10
Match: AT1G29270.1 (AT1G29270.1 unknown protein) HSP 1 Score: 88.2 bits (217), Expect = 4.5e-18 Identity = 62/149 (41.61%), Postives = 97/149 (65.10%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. TAIR10
Match: AT2G40435.1 (AT2G40435.1 BEST Arabidopsis thaliana protein match is: transcription regulators (TAIR:AT3G56220.1)) HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06 Identity = 47/148 (31.76%), Postives = 78/148 (52.70%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. TAIR10
Match: AT3G56220.1 (AT3G56220.1 transcription regulators) HSP 1 Score: 47.4 bits (111), Expect = 8.8e-06 Identity = 51/149 (34.23%), Postives = 78/149 (52.35%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. NCBI nr
Match: gi|449433736|ref|XP_004134653.1| (PREDICTED: uncharacterized protein LOC101213083 [Cucumis sativus]) HSP 1 Score: 193.0 bits (489), Expect = 3.7e-46 Identity = 111/154 (72.08%), Postives = 124/154 (80.52%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. NCBI nr
Match: gi|659078435|ref|XP_008439723.1| (PREDICTED: uncharacterized protein LOC103484437 [Cucumis melo]) HSP 1 Score: 191.4 bits (485), Expect = 1.1e-45 Identity = 110/154 (71.43%), Postives = 124/154 (80.52%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. NCBI nr
Match: gi|590623442|ref|XP_007025323.1| (Uncharacterized protein TCM_029655 [Theobroma cacao]) HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23 Identity = 75/154 (48.70%), Postives = 105/154 (68.18%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. NCBI nr
Match: gi|823224569|ref|XP_012445055.1| (PREDICTED: uncharacterized protein LOC105769147 [Gossypium raimondii]) HSP 1 Score: 116.3 bits (290), Expect = 4.4e-23 Identity = 72/153 (47.06%), Postives = 100/153 (65.36%), Query Frame = 1
BLAST of CmoCh07G001700.1 vs. NCBI nr
Match: gi|823232574|ref|XP_012448993.1| (PREDICTED: uncharacterized protein LOC105772215 [Gossypium raimondii]) HSP 1 Score: 114.0 bits (284), Expect = 2.2e-22 Identity = 72/154 (46.75%), Postives = 99/154 (64.29%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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