CmoCh06G007550.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAAACCGAAAAACGGAAAAAATCAGAAGCTCAGTAACACACCGACCATGGACAAGAGAAGCAGAGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTCCCTCCGCCGTCTCAGGCCAAAGCTCCGCCGCCTCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGGTTTCTATTAGGGCTTGCTTCTTCCTCTCGTTTTTTTTTTCTTTTCTTCACACCGCTGAGATAAGTTCACGGTTTCTTGAATCTTTGTTTGTTATTCAACTGAAACTTATCTGCTTTTTGTTTTGTTGCAATTTTCGCTTCCTTCCGTGATGGTGATTTCAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTGCGTTTGAATTCTTTGAGAAGCCTTCTTGTTCGATTTATCTTTGTTCTTTTAAAATTTGAGATGATTGTGAAATGCGTCATGGCGGAAAATGTCCTGTTTTCGGTTCTTGGTATCTGTTTGACATTGTCGACCTGCTACCTTTTATGATACTTCTGAGTTTATTAGCGATTGTGCATTTCTTATACTTCGTTCCATGATTCGGTTTCTTTTGTTGTGTGAAGATTGTGTTGAAGGGTCCTTTTTTCACATGATTTTTTTTTTCTTGATTGGTGCACTTGGGAGGAGTAATGAGAAAACTTCACTTTGATATTAGAATTGGCGTGGGGTTCAGTTCATGTATTTACATCTTACTGCAGACGGTATACAGGATATGCTTCATTTACATTTTTGCAGGTTGGAAGTCACCACACCGATGAGGATTTTGCCATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTATGCAGAAAACCTACACTGTTCTGTTTCTTTTCTATCGTTTCTCCATCTGTTCTTGCTGTTGCTGTTCTGTATTTGATAAATGGCTGTCTGCTTTCAGGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTCGTTTTAAAACCGGTGAGTGATCGTTAACAAAAATGTCACCTGCAGACTTCGAATGTTACCTAATCATTTATCTCATCTACAATTGTACTAAATGTTTAGCTGTTCACTTCCTAAATGCACTACTTGTATAGATAAATTGTTGTCATTTCTTAATATGAAGACGTTTTGATCATTCTTAAGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGACTAGATGGCAGCAAGGCGTTGGGTGAACTGGATTTCCAGGTAAAAATTAACATTAGGGCTCTTGAATTGAGTTTCTTGCTAGTTTCTGAGGAAACTGATGTTTCTTCTGCTATGTTTTTGAATTTGAAAAATGTAGATCGGAGATTATTTGGACGTGGCAATCATGTAGAAATCTGGGTTACATGAAAGTGATGATGCTACTATTTAGTTGGAGAGTGAATGTTATCAAATGTTTTCTGCATTTTTTTAATTTCTATATTCAAATGTCTTGTGAAGGTAGAAGAACAGATTGTATTGATTGGTAACTTTGATTCTGTCATCTGGTTCTAGTTTGAATCCCATTATTTAATAACCTCTTCTTATATTTCCCCAAATATGTACTTTTAGATCTCTATGTTTTATAGAACTTTATTTCACAAGGGAAA ATGGCTAAACCGAAAAACGGAAAAAATCAGAAGCTCAGTAACACACCGACCATGGACAAGAGAAGCAGAGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTCCCTCCGCCGTCTCAGGCCAAAGCTCCGCCGCCTCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTTGGAAGTCACCACACCGATGAGGATTTTGCCATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTCGTTTTAAAACCGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGACTAGATGGCAGCAAGGCGTTGGGTGAACTGGATTTCCAGATCGGAGATTATTTGGACGTGGCAATCATGTAGAAATCTGGGTTACATGAAAGTGATGATGCTACTATTTAGTTGGAGAGTGAATGTTATCAAATGTTTTCTGCATTTTTTTAATTTCTATATTCAAATGTCTTGTGAAGGTAGAAGAACAGATTGTATTGATTGGTAACTTTGATTCTGTCATCTGGTTCTAGTTTGAATCCCATTATTTAATAACCTCTTCTTATATTTCCCCAAATATGTACTTTTAGATCTCTATGTTTTATAGAACTTTATTTCACAAGGGAAA ATGGCTAAACCGAAAAACGGAAAAAATCAGAAGCTCAGTAACACACCGACCATGGACAAGAGAAGCAGAGACGAGAAGATGAGTGGAGCTGCAACTGCTCCGCCCCAAGGGAGACCGTCTGCGCGGCCACTCCCTCCGCCGTCTCAGGCCAAAGCTCCGCCGCCTCCTCCTCGCGCTCGTTTCGAACCCGTCGACCGCGAAAAGACTTGCCCTTTGCTGCTTCGCGTTTTTACTAAGGTTGGAAGTCACCACACCGATGAGGATTTTGCCATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTCCGGGAGCTAACCGATCTAGTTAAGGAGGTTGCTCCGGAGGCAAGAAGAAGAAATGCCAAACTTTCTTTTGCTTTTGTTTATCCCGACAAGCGTGGTCGATTCGTTTTAAAACCGGTGGGAACAACACATTCTTATGGAAATGGCAGGAGACTAGATGGCAGCAAGGCGTTGGGTGAACTGGATTTCCAGATCGGAGATTATTTGGACGTGGCAATCATGTAG
BLAST of CmoCh06G007550.1 vs. Swiss-Prot
Match: SAP18_ARATH (Histone deacetylase complex subunit SAP18 OS=Arabidopsis thaliana GN=At2g45640 PE=1 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 8.5e-48 Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. Swiss-Prot
Match: SAP18_HUMAN (Histone deacetylase complex subunit SAP18 OS=Homo sapiens GN=SAP18 PE=1 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27 Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. Swiss-Prot
Match: SAP18_BOVIN (Histone deacetylase complex subunit SAP18 OS=Bos taurus GN=SAP18 PE=2 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27 Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. Swiss-Prot
Match: SAP18_PONAB (Histone deacetylase complex subunit SAP18 OS=Pongo abelii GN=SAP18 PE=2 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.7e-27 Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. Swiss-Prot
Match: SAP18_MOUSE (Histone deacetylase complex subunit SAP18 OS=Mus musculus GN=Sap18 PE=1 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 2.2e-27 Identity = 68/123 (55.28%), Postives = 84/123 (68.29%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. TrEMBL
Match: A0A0A0L751_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G038150 PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 3.5e-80 Identity = 154/166 (92.77%), Postives = 156/166 (93.98%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. TrEMBL
Match: W9S970_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023149 PE=4 SV=1) HSP 1 Score: 257.7 bits (657), Expect = 1.1e-65 Identity = 133/174 (76.44%), Postives = 144/174 (82.76%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. TrEMBL
Match: M5WC77_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012467mg PE=4 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 1.0e-63 Identity = 124/171 (72.51%), Postives = 143/171 (83.63%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. TrEMBL
Match: A0A061DVR5_THECC (SIN3 associated polypeptide P18 OS=Theobroma cacao GN=TCM_005460 PE=4 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 2.5e-62 Identity = 125/157 (79.62%), Postives = 136/157 (86.62%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. TrEMBL
Match: A0A0B0NV41_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_21512 PE=4 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 1.2e-61 Identity = 125/159 (78.62%), Postives = 135/159 (84.91%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. TAIR10
Match: AT2G45640.1 (AT2G45640.1 SIN3 associated polypeptide P18) HSP 1 Score: 191.4 bits (485), Expect = 4.8e-49 Identity = 102/153 (66.67%), Postives = 118/153 (77.12%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. NCBI nr
Match: gi|449460459|ref|XP_004147963.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis sativus]) HSP 1 Score: 305.8 bits (782), Expect = 5.0e-80 Identity = 154/166 (92.77%), Postives = 156/166 (93.98%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. NCBI nr
Match: gi|659096143|ref|XP_008448944.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]) HSP 1 Score: 304.3 bits (778), Expect = 1.4e-79 Identity = 154/166 (92.77%), Postives = 155/166 (93.37%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. NCBI nr
Match: gi|703143623|ref|XP_010108064.1| (hypothetical protein L484_023149 [Morus notabilis]) HSP 1 Score: 257.7 bits (657), Expect = 1.5e-65 Identity = 133/174 (76.44%), Postives = 144/174 (82.76%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. NCBI nr
Match: gi|595849354|ref|XP_007209707.1| (hypothetical protein PRUPE_ppa012467mg [Prunus persica]) HSP 1 Score: 251.1 bits (640), Expect = 1.4e-63 Identity = 124/171 (72.51%), Postives = 143/171 (83.63%), Query Frame = 1
BLAST of CmoCh06G007550.1 vs. NCBI nr
Match: gi|470125465|ref|XP_004298722.1| (PREDICTED: histone deacetylase complex subunit SAP18-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 250.8 bits (639), Expect = 1.9e-63 Identity = 129/170 (75.88%), Postives = 144/170 (84.71%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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