CmoCh03G011050.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCAGCAGTTCTTCTGTTCGGTGTAAGCTCTGAACTGAAGTTCTCATTTTCGTTCGTCTTCATCTCTTTCGTCAGTCAATCCATTTCTCCATATGCTTCTCTATTAGCATGTTTCTTTGAAATACAACTGCGGTTATCATTAGGGTTTTGATCTTCGATTCATCATTCCAAGAGACGGACCGGAAGAGTTCGTCCACCTCCCATCGTTTCTCCCTGGCTTGCTGTTTGCGCAATAATCTCCATCTATCTGTTCTTCGGCTGCTAAATCCCTCTGGAAATTGAGATTTTAAACCAGAGATATGGAATCAGCGGAGGGGCTTAATCACTTCAAAGTTGGGCTTCTTCCAACAGTGTTCTATATTCCCGACTTCATAAGCGACGAAGACGAGACTATGATTCTGGATAATGTACCAATTTTTACCATTGCTTTTCGTTCTTTGTCCTTTTTTTCGCCCTGTAATTGTTCGCTAAGCTAGGTAAGTTTCATTTGTAGATTTATAAAGCGCCTGCGTCAAAATGGAAATCCTTGAAGAACAGGAGGCTGCAAAATTGGGGTTTGTTGAATAGCGATCTCATGTATTTTTTGCTAATTTTTCGAAGTTCTGAATCTTTGAAAGATCTGTAAGATTGCTTTCCTTAACCATTGATTTCTTGCAGGTGGCGTTGTGCATGAAAAAGGTCTTCTTCCTCAAGAATGTAAGTAAAGAAAGAACTATATTTAAATGTTCTTAGTTAAGCTTAAACTTGATTGCCATATATCAGCTAAAATTAATGCATGGAGATAGACTTCTTATTGACTTGATTACAGAATTCTAGCATGCTCTATTCATAATAACTTTCTATATTCAAGGTAATAGTACATTTTGTTCCCTGTTCTGTGCAATTTTTTCTTGAACGTTTAAAAATTGAAGACAACCAATGGGAGAAATTTGGTTCATGAGAAATTAACTTCAAATTGGAAGTATAAGGCAACTTATAGGATAGGTGAACACAATGTGGAGGTTTGGAATGCAGCAAATTTCATTTTTGTCTTTCTGTTGGCTGTACTACCAAATTTAACTTTTGCTTTTGATTACGTTGGGGAATTAATACTTTTGGTTAGACTAGTTTAATTCAACCGCCTCGTGGGAATGATAGAAAACAGCTGGAAAGACTTATACTGTGAGATTCCATATTGGTTGGAGACGGGAATGACCATTCCTTATAAGGGTGTGGAAACCTCTTCTTAGTAGATGCGTTTTAAAATCGTGAGTCCGACGACGATACGTAACAGGTTAAAACGGACAATATTTGCTAGCAGTGGGTTTGAGTTTTTACAAATGGTATCAGAGCCAAACACCGAGCGGTGTGTCGACGAGGACGTTAGGCCCCTAAGAGGGGTGGATTGTGAGATCCCATATCGGTTGGAGACGGGAACGAACCATTCCTTATAAGGGTGTAGGAACCTTTCCCTAGCAGACGCATTTTAAAACCGATGGCGATACGTAACGAGCGAAAGTAGACAATATCTAATAACGGTGGGCTTGGGCTGTTACATATACTGCCATCAAGCTTGCAATTGGATATTAGTGCGGGTTTATGAACTTACTTGAAGAGAATCTGTTCTATAGATTTTATAATGGTGTCCTTTGAGCTCTAAAGTTTTGATATTAGCACGGTTTTCTTACTCATCTACGTTGGGTAGTCCATATTTTCATGTCCCTTACGCAAAAACTTGGATATTTCACATTCTTCTACAACGATTGCTTAAGTAGGACAAACAAGCATCCATATCATTTATCATAGTACACCACTTGACCCTATGCAGGTTGCCAAAATTTGTTTCCATCAAGCCATTTATTCTTGTATAATTTGTTTCCATCAAGCCATTTATTCTTTGTATAATTTGTTTCCATCAAGCCATTTATTCTTGTATAATTTGTTTCTGTTTTCTGCTGTGCCTAATTCTCCTCTATGGTTGGCACTCATCTTGATTTACAGCTTTACATATATGTTCCTTTCTCTAAGAGATTTGCCTCTCTGGATGTTAGGTGAAAAAATTGGACGAATTCAATCAGTTAAATTAACAAATCTCTGTCTTTTGATGTTCTGCAGTGCCTATATGGCTGACGAATATCACCAAGAAGATCTATCAAGAAACAAATCTATACCCTGCACCCATAAACCATGTTCTTATCAACGAATACCGTCCTAATCAAGGCATAATGGTACGAGCTGACGTTTGCCCATTCTTAGCGCAGTTCTTGTTTGAATTATAATTATGTTCTTGCCAAGATCCTCATCATAGAACTAATCTAGTGCTGTACTTTACCAATTAGCAACATCTTAGAAACAGTTTTTGGTTCTTGTGTAGCCACACCAAGATGGGCCTGCGTACTTTCCGGTAGTAACAATTCTGTCTCTCGGTTCTCCTGTCGTTATGGACTTCACTCCCCATTTGAGGTTGAAATCATGTCCAGACCAGTTGACAGAAAGCTTCGACGACAAGGATTCTAATGGAGCTTCTGATGTCGAGACTCACCGCCCTTTCTCTATCCTTCTAATGCCTCGTAGTTTGCTCGTTTTTAAGGATGAAGCTTATTCGGGTAAATCTTGCTATTGATTTTGTCTTTTAACCATCCCTGCTTACTTGATTTTATCTTCTAATGCCTCGTAGGTTACTTGCATGGCATCAGTGACAATAGTCTTCAATGTTATGAACAGGTATGATAACGACTAAATGTAGCTTTTGCAGGATCTAATTGATTCTTGATATTGATTTCATCATTGCAAGTTTGTTTTTCATTTCTTTGCTTTCTCAGGCAGTGAACAAAATTGAAGTTCGTAACTGTCTATTAGAAACTGAAAATCCAACCGTTGAAGTGAACTGCAATCATAGTTCTTTCGAGAGAACGAATAATCGGCTTTCGTTGACATGTCGACTCGTACCAAAGGTTCACAAGCATTTGTTCAGGCGTTGAACGGCTCTTGAAGAAACTTTTGGTTTGTACAATATCACAAGTTCTAAATTGGCTATCCTAGGTTCGTTAACCATTGGTTTATGATTTTATAGTTTAATAATATGAGGTAAAGGATTCAAATTTTTAATTTCTTAGTCGTTGGTATGTATTTATAAGTTGAGTTATAACGGTTGAAAATTACCACGCAAAATTGACGGTCAAAATTA GCAGCAGTTCTTCTGTTCGGTGTAAGCTCTGAACTGAAGTTCTCATTTTCGTTCGTCTTCATCTCTTTCGTCAGTCAATCCATTTCTCCATATGCTTCTCTATTAGCATGTTTCTTTGAAATACAACTGCGGTTATCATTAGGGTTTTGATCTTCGATTCATCATTCCAAGAGACGGACCGGAAGAGTTCGTCCACCTCCCATCGTTTCTCCCTGGCTTGCTGTTTGCGCAATAATCTCCATCTATCTGTTCTTCGGCTGCTAAATCCCTCTGGAAATTGAGATTTTAAACCAGAGATATGGAATCAGCGGAGGGGCTTAATCACTTCAAAGTTGGGCTTCTTCCAACAGTGTTCTATATTCCCGACTTCATAAGCGACGAAGACGAGACTATGATTCTGGATAATATTTATAAAGCGCCTGCGTCAAAATGGAAATCCTTGAAGAACAGGAGGCTGCAAAATTGGGGTGGCGTTGTGCATGAAAAAGGTCTTCTTCCTCAAGAATTGCCTATATGGCTGACGAATATCACCAAGAAGATCTATCAAGAAACAAATCTATACCCTGCACCCATAAACCATGTTCTTATCAACGAATACCGTCCTAATCAAGGCATAATGGTACGAGCTGACCCACACCAAGATGGGCCTGCGTACTTTCCGGTAGTAACAATTCTGTCTCTCGGTTCTCCTGTCGTTATGGACTTCACTCCCCATTTGAGGTTGAAATCATGTCCAGACCAGTTGACAGAAAGCTTCGACGACAAGGATTCTAATGGAGCTTCTGATGTCGAGACTCACCGCCCTTTCTCTATCCTTCTAATGCCTCGTAGTTTGCTCGTTTTTAAGGATGAAGCTTATTCGGGTTACTTGCATGGCATCAGTGACAATAGTCTTCAATGTTATGAACAGGCAGTGAACAAAATTGAAGTTCGTAACTGTCTATTAGAAACTGAAAATCCAACCGTTGAAGTGAACTGCAATCATAGTTCTTTCGAGAGAACGAATAATCGGCTTTCGTTGACATGTCGACTCGTACCAAAGGTTCACAAGCATTTGTTCAGGCGTTGAACGGCTCTTGAAGAAACTTTTGGTTTGTACAATATCACAAGTTCTAAATTGGCTATCCTAGGTTCGTTAACCATTGGTTTATGATTTTATAGTTTAATAATATGAGGTAAAGGATTCAAATTTTTAATTTCTTAGTCGTTGGTATGTATTTATAAGTTGAGTTATAACGGTTGAAAATTACCACGCAAAATTGACGGTCAAAATTA ATGGAATCAGCGGAGGGGCTTAATCACTTCAAAGTTGGGCTTCTTCCAACAGTGTTCTATATTCCCGACTTCATAAGCGACGAAGACGAGACTATGATTCTGGATAATATTTATAAAGCGCCTGCGTCAAAATGGAAATCCTTGAAGAACAGGAGGCTGCAAAATTGGGGTGGCGTTGTGCATGAAAAAGGTCTTCTTCCTCAAGAATTGCCTATATGGCTGACGAATATCACCAAGAAGATCTATCAAGAAACAAATCTATACCCTGCACCCATAAACCATGTTCTTATCAACGAATACCGTCCTAATCAAGGCATAATGGTACGAGCTGACCCACACCAAGATGGGCCTGCGTACTTTCCGGTAGTAACAATTCTGTCTCTCGGTTCTCCTGTCGTTATGGACTTCACTCCCCATTTGAGGTTGAAATCATGTCCAGACCAGTTGACAGAAAGCTTCGACGACAAGGATTCTAATGGAGCTTCTGATGTCGAGACTCACCGCCCTTTCTCTATCCTTCTAATGCCTCGTAGTTTGCTCGTTTTTAAGGATGAAGCTTATTCGGGTTACTTGCATGGCATCAGTGACAATAGTCTTCAATGTTATGAACAGGCAGTGAACAAAATTGAAGTTCGTAACTGTCTATTAGAAACTGAAAATCCAACCGTTGAAGTGAACTGCAATCATAGTTCTTTCGAGAGAACGAATAATCGGCTTTCGTTGACATGTCGACTCGTACCAAAGGTTCACAAGCATTTGTTCAGGCGTTGA
BLAST of CmoCh03G011050.1 vs. Swiss-Prot
Match: ALKB6_XENLA (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Xenopus laevis GN=alkbh6 PE=2 SV=1) HSP 1 Score: 156.0 bits (393), Expect = 5.6e-37 Identity = 94/246 (38.21%), Postives = 130/246 (52.85%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. Swiss-Prot
Match: ALKB6_HUMAN (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Homo sapiens GN=ALKBH6 PE=1 SV=2) HSP 1 Score: 153.3 bits (386), Expect = 3.6e-36 Identity = 84/234 (35.90%), Postives = 119/234 (50.85%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. Swiss-Prot
Match: ALKB6_MOUSE (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Mus musculus GN=Alkbh6 PE=2 SV=3) HSP 1 Score: 151.4 bits (381), Expect = 1.4e-35 Identity = 84/239 (35.15%), Postives = 124/239 (51.88%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. Swiss-Prot
Match: ALKB6_DANRE (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Danio rerio GN=alkbh6 PE=2 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 2.3e-35 Identity = 84/234 (35.90%), Postives = 119/234 (50.85%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. TrEMBL
Match: A0A0A0KKP8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G476660 PE=4 SV=1) HSP 1 Score: 424.9 bits (1091), Expect = 7.1e-116 Identity = 211/257 (82.10%), Postives = 226/257 (87.94%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. TrEMBL
Match: A0A151U3X6_CAJCA (Alkylated DNA repair protein alkB isogeny 6 OS=Cajanus cajan GN=KK1_006697 PE=4 SV=1) HSP 1 Score: 322.8 bits (826), Expect = 3.8e-85 Identity = 165/272 (60.66%), Postives = 201/272 (73.90%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. TrEMBL
Match: G7KMG1_MEDTR (2OG-Fe(II) oxygenase family protein OS=Medicago truncatula GN=MTR_6g059320 PE=4 SV=1) HSP 1 Score: 322.0 bits (824), Expect = 6.5e-85 Identity = 163/265 (61.51%), Postives = 201/265 (75.85%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. TrEMBL
Match: V7C2R3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G131600g PE=4 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 1.9e-84 Identity = 158/262 (60.31%), Postives = 190/262 (72.52%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. TrEMBL
Match: I3SBA3_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 318.5 bits (815), Expect = 7.2e-84 Identity = 160/271 (59.04%), Postives = 196/271 (72.32%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. TAIR10
Match: AT4G20350.2 (AT4G20350.2 oxidoreductases) HSP 1 Score: 296.2 bits (757), Expect = 1.9e-80 Identity = 149/249 (59.84%), Postives = 180/249 (72.29%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. NCBI nr
Match: gi|659125329|ref|XP_008462630.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Cucumis melo]) HSP 1 Score: 434.5 bits (1116), Expect = 1.3e-118 Identity = 214/257 (83.27%), Postives = 228/257 (88.72%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. NCBI nr
Match: gi|778717709|ref|XP_011657744.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Cucumis sativus]) HSP 1 Score: 424.9 bits (1091), Expect = 1.0e-115 Identity = 211/257 (82.10%), Postives = 226/257 (87.94%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. NCBI nr
Match: gi|659125333|ref|XP_008462632.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X2 [Cucumis melo]) HSP 1 Score: 349.0 bits (894), Expect = 7.1e-93 Identity = 171/206 (83.01%), Postives = 181/206 (87.86%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. NCBI nr
Match: gi|950929633|ref|XP_014502684.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Vigna radiata var. radiata]) HSP 1 Score: 325.1 bits (832), Expect = 1.1e-85 Identity = 161/262 (61.45%), Postives = 191/262 (72.90%), Query Frame = 1
BLAST of CmoCh03G011050.1 vs. NCBI nr
Match: gi|502162781|ref|XP_004512614.1| (PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 [Cicer arietinum]) HSP 1 Score: 325.1 bits (832), Expect = 1.1e-85 Identity = 169/268 (63.06%), Postives = 200/268 (74.63%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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