CmoCh02G005200.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G005200.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr02 : 2914491 .. 2916262 (+)
Sequence length	1012

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTGCTTTGTCACTTTATATAATATGAATCTCAATCTCTTCCTCTTCTTCTTCTTCTTTTCCATCAATACATAGCAATAAAAATTTCAACTCAGATTGGGAAGAGCTGATGGCAACAACCATCCATGGCGAAGAACACGATAAACAAGACGAAGACGAAGAAGAAGCGTTATCTTTGTGCGACCTTCCCGTCAAAGAAAAGCAGCAGCCTTCGCTTCTAAATGAAAACCCCATCACGGAGGATTTCGATTTCAACCACTGGCCACCGCCGCCGTCGCCGCCGCCCATGTGCGCTGCCGACGACATCTTCTTTCAAGGCCATTTGCTCCCTCTTCGCCTCTCTGTTAGCTCTGATAATACTCACAATCACTTCTTTTCTAAACCTCTGTCCGCCAGGTTCGAACCCAGCCACAATTGTTCATACATTTAATTTTTTTTTTTTAATTTCTTAATTTATTTAATTTTTCCAGGTCGGAGTCTATGGATCATAATATGTTGAGGTTTAGAAATGGAAGCAGTAGTAGCAGTAGCAATAGCAGTAGAAGTCATTATTCCAGGTATGCTTTTTTAATTTCTCCCCATTTCAATTAATTATTTTATTTCAAACTTGGATATTTTTAAAATTATAATCTCCAAAATCCAACTCAAATTCAAACATCAAAATATATTACCGTTACACAAAATAAAAGGTTAAATTAATAATAATAAAATAAAATAAACTTTCCCAAAAAAAAATATATTGTTTTAACTTTAAAAGTTTTAATAATCTTTTAATTTTATAAAAATTGAATTTAGCAAAGTTTTATTAATATTTTTAATTTTTTTAAAAATATTTTACCCATTAACACTAATACCGTTAAAGATATTGTCCTTAGGTTTTCCCTATTTTAAAATGGCCCGATCTTAAAAGTTTGTTTTGTTCTCTTCTCCAACTAATAGATAATATTATTTTTATAAATTTATAGATATTTTTTTTTTAAATGTTAAAAATATTAATAAAAATTATATTTGAAATAAAATAATCACGGTTGGAGGATGGAAGTCCACACTAATTTAGGAAATGATCGATAAGTTAGGAATATTACCTCTATTGGTAGAGGCCAACTCTTGGGTAAGCCCAAACCAAAGCCACGAGAGCTTATGTTCAAAGAGGACATGATTGTGGAGAGTTGTGTTCATCTAATAATCACGATCTAGTTATATATTTTTAAAAAAATAATTGATGAAATATTTTGAATTGCAGGTGTTCAAGTATTAGTAACAATTCCATTTCAATTCCGACGAACTCAAAGCCAAGAACTCAAAACAACGTCTTCCACTCTCACCCAAGTCCCACGCCCCAAATCAGATCCTTTTCGACTTTCGGCCGCCGGAGCCGGAGCCGGAGCTCCTCCCGCTGGGACTTTTTCCGGGTGGGTCTTCTCCGAACGCCAGGGATGGAACTTCACGACCTCAAAACTCGCACCACCGTCAGCAACGCGGTACCCACGGTGGGGCAGAAAACAACCGCCTCGTTTTTGGGTGTGGTGAGCTGCAAAAAATCAGTGGAGACAATACCGGCGGCGAAGAAGATAAAGAATTGGAGTGGGAATATTGGGAAGAAAAGGAATGAAAAGGGAAAGGGAATTGGGATTAGGGAGAAGGAATTGAATGATAATGTTGAAATTAGGGAAAAGGAAAAGGAAAAGGCGACGAGGCTGTCACATCGTCGAACATTTGAATGGCTAAAGCAGCTCTCGCATGCAACCTTTGCTGACCAACAATCATCTTGA

mRNA sequence

CTTTGCTTTGTCACTTTATATAATATGAATCTCAATCTCTTCCTCTTCTTCTTCTTCTTTTCCATCAATACATAGCAATAAAAATTTCAACTCAGATTGGGAAGAGCTGATGGCAACAACCATCCATGGCGAAGAACACGATAAACAAGACGAAGACGAAGAAGAAGCGTTATCTTTGTGCGACCTTCCCGTCAAAGAAAAGCAGCAGCCTTCGCTTCTAAATGAAAACCCCATCACGGAGGATTTCGATTTCAACCACTGGCCACCGCCGCCGTCGCCGCCGCCCATGTGCGCTGCCGACGACATCTTCTTTCAAGGCCATTTGCTCCCTCTTCGCCTCTCTGTTAGCTCTGATAATACTCACAATCACTTCTTTTCTAAACCTCTGTCCGCCAGGTCGGAGTCTATGGATCATAATATGTTGAGGTTTAGAAATGGAAGCAGTAGTAGCAGTAGCAATAGCAGTAGAAGTCATTATTCCAGGTGTTCAAGTATTAGTAACAATTCCATTTCAATTCCGACGAACTCAAAGCCAAGAACTCAAAACAACGTCTTCCACTCTCACCCAAGTCCCACGCCCCAAATCAGATCCTTTTCGACTTTCGGCCGCCGGAGCCGGAGCCGGAGCTCCTCCCGCTGGGACTTTTTCCGGGTGGGTCTTCTCCGAACGCCAGGGATGGAACTTCACGACCTCAAAACTCGCACCACCGTCAGCAACGCGGTACCCACGGTGGGGCAGAAAACAACCGCCTCGTTTTTGGGTGTGGTGAGCTGCAAAAAATCAGTGGAGACAATACCGGCGGCGAAGAAGATAAAGAATTGGAGTGGGAATATTGGGAAGAAAAGGAATGAAAAGGGAAAGGGAATTGGGATTAGGGAGAAGGAATTGAATGATAATGTTGAAATTAGGGAAAAGGAAAAGGAAAAGGCGACGAGGCTGTCACATCGTCGAACATTTGAATGGCTAAAGCAGCTCTCGCATGCAACCTTTGCTGACCAACAATCATCTTGA

Coding sequence (CDS)

ATGGCAACAACCATCCATGGCGAAGAACACGATAAACAAGACGAAGACGAAGAAGAAGCGTTATCTTTGTGCGACCTTCCCGTCAAAGAAAAGCAGCAGCCTTCGCTTCTAAATGAAAACCCCATCACGGAGGATTTCGATTTCAACCACTGGCCACCGCCGCCGTCGCCGCCGCCCATGTGCGCTGCCGACGACATCTTCTTTCAAGGCCATTTGCTCCCTCTTCGCCTCTCTGTTAGCTCTGATAATACTCACAATCACTTCTTTTCTAAACCTCTGTCCGCCAGGTCGGAGTCTATGGATCATAATATGTTGAGGTTTAGAAATGGAAGCAGTAGTAGCAGTAGCAATAGCAGTAGAAGTCATTATTCCAGGTGTTCAAGTATTAGTAACAATTCCATTTCAATTCCGACGAACTCAAAGCCAAGAACTCAAAACAACGTCTTCCACTCTCACCCAAGTCCCACGCCCCAAATCAGATCCTTTTCGACTTTCGGCCGCCGGAGCCGGAGCCGGAGCTCCTCCCGCTGGGACTTTTTCCGGGTGGGTCTTCTCCGAACGCCAGGGATGGAACTTCACGACCTCAAAACTCGCACCACCGTCAGCAACGCGGTACCCACGGTGGGGCAGAAAACAACCGCCTCGTTTTTGGGTGTGGTGAGCTGCAAAAAATCAGTGGAGACAATACCGGCGGCGAAGAAGATAAAGAATTGGAGTGGGAATATTGGGAAGAAAAGGAATGAAAAGGGAAAGGGAATTGGGATTAGGGAGAAGGAATTGAATGATAATGTTGAAATTAGGGAAAAGGAAAAGGAAAAGGCGACGAGGCTGTCACATCGTCGAACATTTGAATGGCTAAAGCAGCTCTCGCATGCAACCTTTGCTGACCAACAATCATCTTGA

Homology

[Close]

BLAST of CmoCh02G005200.1 vs. TrEMBL
Match: A0A0A0LPT6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G277620 PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 3.8e-84
Identity = 195/300 (65.00%), Postives = 225/300 (75.00%), Query Frame = 1


Query: 8   EEHDKQDEDEEEALSLCDLPVKEKQQPSLLNENPITE---DFDFNHWPPPPSPPPMCAAD 67
           ++ D+++E+EEEALSLCDLPVKEKQQP+      + E   DFDFNHW PPPSP  M  AD
Sbjct: 27  DDDDEEEEEEEEALSLCDLPVKEKQQPTRSVSTTVVETDQDFDFNHWRPPPSP--MLTAD 86

Query: 68  DIFFQGHLLPLRLSVSSDNTHNHFFSKPLSARSESMD-HNMLRFRNGSSSSSSNSSRSHY 127
           D+FFQGH+LPLRLS SS+N+ N+  +  L  RSESMD +NMLRFRN S+SSSS  SRSHY
Sbjct: 87  DLFFQGHMLPLRLSFSSENSQNN--NGNLWCRSESMDGNNMLRFRNESTSSSS--SRSHY 146

Query: 128 SRCSSISNNSISIPTNSKPR-TQNNVFHSHPSPTPQIRSFSTFGRRSRSRSSSRWDFFRV 187
           SR SS+SNNSISIPTNSKPR + NNVFHSHPSPTPQIRSFST     RSRSSSRW+FFR+
Sbjct: 147 SRSSSLSNNSISIPTNSKPRPSNNNVFHSHPSPTPQIRSFSTSSH--RSRSSSRWEFFRL 206

Query: 188 GLLRTPGMELHDLKTRTTVSNAVPT---VGQKTTASFLGVVSCKKSVETIPAAKKIKNWS 247
           GLLRTPGMELHDLKTRTT +    T      KTTAS LGVVSCK+SVET+P     KN  
Sbjct: 207 GLLRTPGMELHDLKTRTTTTTTTTTTTSTAHKTTASILGVVSCKRSVETVPTTTGSKN-- 266

Query: 248 GNIGKKRNEKGKGIGIREKELNDN-VEIREKEKEKATRLSHRRTFEWLKQLSHATFADQQ 299
                 R  +   +   +K  +DN VEIREKEKEK  R+SHRRTFEWLKQLSHATF ++Q
Sbjct: 267 ------RIRRENVLENNKKNNDDNKVEIREKEKEKERRVSHRRTFEWLKQLSHATFGEEQ 310

[Close]

BLAST of CmoCh02G005200.1 vs. TrEMBL
Match: A0A0D2RFS0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G028600 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.2e-33
Identity = 128/331 (38.67%), Postives = 165/331 (49.85%), Query Frame = 1


Query: 8   EEHDKQDEDEEEALSLCDLPVKEKQQPSLLNEN----PITEDFDFNHWPPPP----SPPP 67
           E+ + +DE++EEALSLCDLPV   ++  L NE        EDF+F  WP       S P 
Sbjct: 6   EKREVEDEEQEEALSLCDLPVNLIEEKELKNEENGEPSQEEDFNFGSWPGHGGSFRSEPE 65

Query: 68  MCAADDIFFQGHLLPLRLSVSSDNTH----NHFFSKPLSARSESMDHNMLRFRNGSSSSS 127
           MC AD++FFQG +LPLR SVSSD       +H  S+ LS RSESMDH  L  R  S SSS
Sbjct: 66  MCVADEVFFQGQILPLRHSVSSDTGFRRHDSHNMSRSLS-RSESMDHGSLS-RFTSVSSS 125

Query: 128 SNSSRSHYSRCSSISNNSISIPTNSKPRTQNNVFHSHPSPTPQIRSFSTFGRRSRSRSSS 187
           S  S SHYS  S+ S + + I  N         F++HPSP PQIRS  T       RSSS
Sbjct: 126 STRSSSHYSTSSTNSKSGMKIRNN---------FNTHPSPKPQIRSTRTAVNSRIQRSSS 185

Query: 188 RWDFFRVGLLRTPGMELHDLKTRTTVSNAVPTVGQKTTASFLGVVSCKKSVETIPAAKKI 247
            WDFF++GL+R P + L DLK +    N+V               SC  S  +  + K +
Sbjct: 186 MWDFFKIGLVRAPELGLQDLKMKPRNKNSVSRNS-----------SCNSS-NSSSSTKLV 245

Query: 248 KNWSGNIGKKRNEKGKGIGIREKE------------------LNDNVEIREKEKEKAT-- 294
            N S      +N++    G+ EK                   LN+N  I+  +K+K T  
Sbjct: 246 NNGSSTAEVSKNQQESNKGLVEKRMGLFSGCTCSVNAVETVPLNNNNNIKNSDKDKTTSH 305

[Close]

BLAST of CmoCh02G005200.1 vs. TrEMBL
Match: A0A061DNT4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000746 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.9e-31
Identity = 142/387 (36.69%), Postives = 190/387 (49.10%), Query Frame = 1


Query: 1   MATTIHGEEHDK--QDEDEEEALSLCDLPV---KEKQQPSLLNENP-------ITEDFDF 60
           M T ++ +E +K   +E+EEEALSLCDLPV   KE+ Q    N            EDF+F
Sbjct: 1   METAVNCDEEEKWEAEEEEEEALSLCDLPVNLIKEENQVQPGNYEDGESQAIKTEEDFNF 60

Query: 61  NHWPPPPSPPP-MCAADDIFFQGHLLPLRLSVSSDNTHNHF------FSKPLSARSESMD 120
             W    S  P MCAAD++FF+G +LPLRLSVSSD+    F       S+ LS RSESMD
Sbjct: 61  GSWGGSLSTEPQMCAADEVFFKGQILPLRLSVSSDSGLTGFRQDSQNTSRCLS-RSESMD 120

Query: 121 HNML-RFRNGSSSSSSNSSRS-HYS----------------RCSSISNNSISIPTNSKPR 180
           H  L RF + SSSS S+S+RS HYS                   S SN+S +  + SKP 
Sbjct: 121 HGSLSRFTSISSSSRSSSTRSSHYSIGSSNSITVTARNFNSNSKSNSNSSSTSNSKSKPI 180

Query: 181 TQNNVFHSHPSPTPQIRSFST--FGRRSRSRSSSRWDFFRVGLLRTPGMELHDLKTRTTV 240
              N F++HPSP PQIR   T      SR++ +S WDFFR+GL+R P +EL DLK R+  
Sbjct: 181 KIRNNFNTHPSPKPQIRLSKTRPVNVSSRNQKTSMWDFFRLGLVRAPELELQDLKVRSNN 240

Query: 241 SNAVPTVGQKTTASFLGVVSCKKSVETIPAAKKIKNWSGNIGKKRNEKGKG-----IGIR 298
           +NA     + + +      S   S  T  +  KI N SG + + + +  KG     IG+ 
Sbjct: 241 NNA----NRNSVSRNSSCNSSNSSSSTKNSTSKIVNNSGEVARNQQDLNKGFLEKRIGLF 300

[Close]

BLAST of CmoCh02G005200.1 vs. TrEMBL
Match: A0A0D2PQT2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G080000 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.9e-31
Identity = 142/346 (41.04%), Postives = 189/346 (54.62%), Query Frame = 1


Query: 2   ATTIHGEEHDKQDEDEEEALSLCDLPV---KEKQQPSLLNENP-------ITEDFDFNHW 61
           A+    E+  + +E+EEEALSLCDLPV   KE+ Q    NE           EDF+F  W
Sbjct: 13  ASNCDEEQKCEAEEEEEEALSLCDLPVNLIKEENQIQPRNEEDGESQAIKTEEDFNFGSW 72

Query: 62  PPPPSPPP-MCAADDIFFQGHLLPLRLSVSSDNT--HNHFFSKPLSARSESMDHNML-RF 121
               S  P MCAAD++FF+G +LPL +S+SSD++    H        RSES+DH  L RF
Sbjct: 73  DGCLSTKPEMCAADEVFFKGQILPLCVSISSDSSLIWCHRQDSQNKPRSESIDHGSLSRF 132

Query: 122 RNGSSSS-SSNSSRSHYSRCSSISN--------NSISIPTNSKPRTQNNVFHSHPSPTPQ 181
            + +SSS SS++  SHYS  SS S         NSI+  + S P    N F++HPSP PQ
Sbjct: 133 TSVTSSSRSSSTGSSHYSTNSSNSTTVTAATSFNSIT-SSKSNPNKSINNFNTHPSPKPQ 192

Query: 182 IRSFST----FGRRSRSRSSSRWDFFRVGLLRTPGMELHDLKTRTTVSN--AVPTVGQKT 241
           IR   T            SSS WDFFR+GL+R P +E H+LK RT  +N  +  +V + +
Sbjct: 193 IRLSKTRPMNISSSRNQTSSSVWDFFRLGLVRAPELEFHELKIRTNNNNNPSRNSVSRNS 252

Query: 242 TAS-----------FL--GVVS-CKKS---VETIPAAKKIKNWSGNIGKKRNEKGKGI-- 298
           + S           FL  G+ S CK S   VET+P   KI      + KK++EK K +  
Sbjct: 253 SCSSSNSQLDSIKGFLRKGLFSGCKCSVNVVETVP-LNKIAVIKSMMIKKKSEKEKAMFQ 312

[Close]

BLAST of CmoCh02G005200.1 vs. TrEMBL
Match: U7DVN2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0318s00200g PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.3e-28
Identity = 132/376 (35.11%), Postives = 183/376 (48.67%), Query Frame = 1


Query: 8   EEHDKQDEDEEEALSLCDLPVK---------EKQQPSLLNENPITEDFDFNHWPPPP--- 67
           ++ + QD++EEE+LSLCDLPV           + Q +        EDFDF  +       
Sbjct: 18  QDEEDQDQEEEESLSLCDLPVNMVKGENNQSTRDQEAHKETETNQEDFDFGPFRGGDGSL 77

Query: 68  -SPPPMCAADDIFFQGHLLPLRLSVSSDNTHNHFFSKP------LSARSESMDHNMLRFR 127
            +   MCAADDIFFQG +LPLRLSVSS++  N F +          +RSESMDHN L   
Sbjct: 78  SNKSDMCAADDIFFQGQILPLRLSVSSESGVNKFKNDTSLNPCHCLSRSESMDHNSLGGL 137

Query: 128 NGSSSSSSNSSRSHYSRCSSISNNSISIPTNSKPRTQNNVFHSHPSPTPQIR-SFSTFGR 187
             S SS S+SSRSHYS  S+ ++++I+     KP  QN  F +HPSP PQIR S ++ G 
Sbjct: 138 T-SFSSRSSSSRSHYSSSSTSTSSAIASTRMIKPIIQNQ-FLTHPSPKPQIRLSSASLGN 197

Query: 188 --RSRSRSSSRWDFFRVGLLRTPGMELHDLKTRTTVSNAVPTVGQKTTASFLGVVSCKK- 247
              S+ R+SS WDFFR+GL+RTP +E  DLK R  VS         +++S   +  C K 
Sbjct: 198 AASSKPRNSSVWDFFRLGLVRTPEIEFQDLKVRNYVSR-----NSSSSSSNSSINKCSKI 257

Query: 248 --SVETIPAAKKIKNWSGNIGKKRNEKGKGIG---------------------IREKELN 299
             S     +++KIKN S +     N+ GK +G                     ++   LN
Sbjct: 258 NVSNGNSKSSRKIKNESRH---NSNDSGKKMGKRSLLEKRGGLLSGCSCSVSTVKPVPLN 317

[Close]

BLAST of CmoCh02G005200.1 vs. TAIR10
Match: AT5G67350.1 (AT5G67350.1 unknown protein)

HSP 1 Score: 82.4 bits (202), Expect = 5.2e-16
Identity = 93/307 (30.29%), Postives = 141/307 (45.93%), Query Frame = 1


Query: 8   EEHDKQDEDEEEALSLCDLPVKEKQQPSLLNENPITEDFD----------FNHWPPPPSP 67
           ++ D ++E+EEEALSLCDLP ++ +  S++ E    E+FD          F        P
Sbjct: 22  DDDDVEEEEEEEALSLCDLPNEKGELRSIVKEED--EEFDSGFEFGIGSSFRAGSDSCEP 81

Query: 68  PP-MCAADDIFFQGHLLPLRLSVSSDNTHNHFFSKPLSARSESMDHNMLRFRNGSSSSSS 127
            P M  AD++FF+G +LPLR SVS D   N      L  RSES++      R G      
Sbjct: 82  APEMSTADELFFKGRILPLRHSVSLDAGLNE--PTRLITRSESVEFR----RTG------ 141

Query: 128 NSSRSHYSRCSSISNNSISIPTNSKPRTQNNVFHSHPSPTPQIRSFSTFGRRSRS----R 187
                              I  + +    N + +S PSP PQIR  S+   R  S    +
Sbjct: 142 -------------------IIRSDRKIKNNFIDYSQPSPQPQIRRSSSMTARVNSIRNPK 201

Query: 188 SSSRWDFFRVGLLRTPGMELHDLKTRTTVSNAVPTVGQKTTASFLGVVSCKKSVETIPAA 247
           SSS WDF R+GL+RTP +EL     RTT  NA  +V + ++ S     S  K + +  + 
Sbjct: 202 SSSIWDFLRLGLVRTPEIEL-----RTTAGNAKLSVSRNSSCSSTSTSSNSKKIGSGESR 261

Query: 248 KKIKNWS-------GNIGKKRNEKGKGIGIREKELNDNVEIREK---EKEKATRLSHRRT 290
            + +  S        ++  +       I +   E  +   + EK   +KE+ + ++ +RT
Sbjct: 262 SRNRRRSFMFSDCKCSVSTETKMAPVKIKVSSGETEEKQRMMEKKTAKKEEKSAMARKRT 290

[Close]

BLAST of CmoCh02G005200.1 vs. NCBI nr
Match: gi|778669884|ref|XP_011649316.1| (PREDICTED: homeobox protein 6-like [Cucumis sativus])

HSP 1 Score: 319.7 bits (818), Expect = 5.4e-84
Identity = 195/300 (65.00%), Postives = 225/300 (75.00%), Query Frame = 1


Query: 8   EEHDKQDEDEEEALSLCDLPVKEKQQPSLLNENPITE---DFDFNHWPPPPSPPPMCAAD 67
           ++ D+++E+EEEALSLCDLPVKEKQQP+      + E   DFDFNHW PPPSP  M  AD
Sbjct: 27  DDDDEEEEEEEEALSLCDLPVKEKQQPTRSVSTTVVETDQDFDFNHWRPPPSP--MLTAD 86

Query: 68  DIFFQGHLLPLRLSVSSDNTHNHFFSKPLSARSESMD-HNMLRFRNGSSSSSSNSSRSHY 127
           D+FFQGH+LPLRLS SS+N+ N+  +  L  RSESMD +NMLRFRN S+SSSS  SRSHY
Sbjct: 87  DLFFQGHMLPLRLSFSSENSQNN--NGNLWCRSESMDGNNMLRFRNESTSSSS--SRSHY 146

Query: 128 SRCSSISNNSISIPTNSKPR-TQNNVFHSHPSPTPQIRSFSTFGRRSRSRSSSRWDFFRV 187
           SR SS+SNNSISIPTNSKPR + NNVFHSHPSPTPQIRSFST     RSRSSSRW+FFR+
Sbjct: 147 SRSSSLSNNSISIPTNSKPRPSNNNVFHSHPSPTPQIRSFSTSSH--RSRSSSRWEFFRL 206

Query: 188 GLLRTPGMELHDLKTRTTVSNAVPT---VGQKTTASFLGVVSCKKSVETIPAAKKIKNWS 247
           GLLRTPGMELHDLKTRTT +    T      KTTAS LGVVSCK+SVET+P     KN  
Sbjct: 207 GLLRTPGMELHDLKTRTTTTTTTTTTTSTAHKTTASILGVVSCKRSVETVPTTTGSKN-- 266

Query: 248 GNIGKKRNEKGKGIGIREKELNDN-VEIREKEKEKATRLSHRRTFEWLKQLSHATFADQQ 299
                 R  +   +   +K  +DN VEIREKEKEK  R+SHRRTFEWLKQLSHATF ++Q
Sbjct: 267 ------RIRRENVLENNKKNNDDNKVEIREKEKEKERRVSHRRTFEWLKQLSHATFGEEQ 310

[Close]

BLAST of CmoCh02G005200.1 vs. NCBI nr
Match: gi|659115855|ref|XP_008457772.1| (PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Cucumis melo])

HSP 1 Score: 312.4 bits (799), Expect = 8.7e-82
Identity = 193/295 (65.42%), Postives = 223/295 (75.59%), Query Frame = 1


Query: 11  DKQDEDEEEALSLCDLPVKEKQQPSLLNENPI--TEDFDFNHWPPPPSPPPMCAADDIFF 70
           D  D++EEEALSLCDLPVKEKQQP+      I  TEDFDFN+W PPPSP  M  ADD+FF
Sbjct: 27  DDDDDEEEEALSLCDLPVKEKQQPTRSVSATIVETEDFDFNNWRPPPSP--MLTADDLFF 86

Query: 71  QGHLLPLRLSVSSDNTHNHFFSKPLSARSESMD-HNMLRFRNGSSSSSSNSSRSHYSRCS 130
           QGH+LPLRLS SS+N+ N+  +  L +RSESMD +NMLRFRNGS+SSSS  SRSHYSR S
Sbjct: 87  QGHMLPLRLSFSSENSQNN--NGNLWSRSESMDRNNMLRFRNGSTSSSS--SRSHYSRSS 146

Query: 131 SISNNSISIPT-NSKPR-TQNNVFHSHPSPTPQIRSFSTFGRRSRSRSSSRWDFFRVGLL 190
           S+SNNSISIPT N+KPR + NNVFHSHPSPTPQIRSFST   RSRS  SSRW+FFR+GLL
Sbjct: 147 SLSNNSISIPTTNTKPRPSNNNVFHSHPSPTPQIRSFSTSSHRSRS--SSRWEFFRLGLL 206

Query: 191 RTPGMELHDLKTRTTVSNAVPTVGQKTTASFLGVVSCKKSVETIPAAKKIKNWSGNIGKK 250
           RTPGMELHDLKTRTT +        KTTAS LGVVSCK+SV+T+P      N   N  ++
Sbjct: 207 RTPGMELHDLKTRTTTTTTTTMTTHKTTASILGVVSCKRSVDTVPTTTGSSN---NRIRR 266

Query: 251 RNEKGKGIGIREKELNDNVEIREKEKEKAT--RLSHRRTFEWLKQLSHATFADQQ 299
            N       + +K  N+ VEIREKEKEK    R+SHRRTFEWLKQLSHATF ++Q
Sbjct: 267 EN-------VLKKNNNNKVEIREKEKEKEKERRVSHRRTFEWLKQLSHATFGEEQ 303

[Close]

BLAST of CmoCh02G005200.1 vs. NCBI nr
Match: gi|823139478|ref|XP_012469599.1| (PREDICTED: probable membrane-associated kinase regulator 1 [Gossypium raimondii])

HSP 1 Score: 149.8 bits (377), Expect = 7.5e-33
Identity = 128/331 (38.67%), Postives = 165/331 (49.85%), Query Frame = 1


Query: 8   EEHDKQDEDEEEALSLCDLPVKEKQQPSLLNEN----PITEDFDFNHWPPPP----SPPP 67
           E+ + +DE++EEALSLCDLPV   ++  L NE        EDF+F  WP       S P 
Sbjct: 6   EKREVEDEEQEEALSLCDLPVNLIEEKELKNEENGEPSQEEDFNFGSWPGHGGSFRSEPE 65

Query: 68  MCAADDIFFQGHLLPLRLSVSSDNTH----NHFFSKPLSARSESMDHNMLRFRNGSSSSS 127
           MC AD++FFQG +LPLR SVSSD       +H  S+ LS RSESMDH  L  R  S SSS
Sbjct: 66  MCVADEVFFQGQILPLRHSVSSDTGFRRHDSHNMSRSLS-RSESMDHGSLS-RFTSVSSS 125

Query: 128 SNSSRSHYSRCSSISNNSISIPTNSKPRTQNNVFHSHPSPTPQIRSFSTFGRRSRSRSSS 187
           S  S SHYS  S+ S + + I  N         F++HPSP PQIRS  T       RSSS
Sbjct: 126 STRSSSHYSTSSTNSKSGMKIRNN---------FNTHPSPKPQIRSTRTAVNSRIQRSSS 185

Query: 188 RWDFFRVGLLRTPGMELHDLKTRTTVSNAVPTVGQKTTASFLGVVSCKKSVETIPAAKKI 247
            WDFF++GL+R P + L DLK +    N+V               SC  S  +  + K +
Sbjct: 186 MWDFFKIGLVRAPELGLQDLKMKPRNKNSVSRNS-----------SCNSS-NSSSSTKLV 245

Query: 248 KNWSGNIGKKRNEKGKGIGIREKE------------------LNDNVEIREKEKEKAT-- 294
            N S      +N++    G+ EK                   LN+N  I+  +K+K T  
Sbjct: 246 NNGSSTAEVSKNQQESNKGLVEKRMGLFSGCTCSVNAVETVPLNNNNNIKNSDKDKTTSH 305

[Close]

BLAST of CmoCh02G005200.1 vs. NCBI nr
Match: gi|590705501|ref|XP_007047456.1| (Uncharacterized protein TCM_000746 [Theobroma cacao])

HSP 1 Score: 143.3 bits (360), Expect = 7.0e-31
Identity = 142/387 (36.69%), Postives = 190/387 (49.10%), Query Frame = 1


Query: 1   MATTIHGEEHDK--QDEDEEEALSLCDLPV---KEKQQPSLLNENP-------ITEDFDF 60
           M T ++ +E +K   +E+EEEALSLCDLPV   KE+ Q    N            EDF+F
Sbjct: 1   METAVNCDEEEKWEAEEEEEEALSLCDLPVNLIKEENQVQPGNYEDGESQAIKTEEDFNF 60

Query: 61  NHWPPPPSPPP-MCAADDIFFQGHLLPLRLSVSSDNTHNHF------FSKPLSARSESMD 120
             W    S  P MCAAD++FF+G +LPLRLSVSSD+    F       S+ LS RSESMD
Sbjct: 61  GSWGGSLSTEPQMCAADEVFFKGQILPLRLSVSSDSGLTGFRQDSQNTSRCLS-RSESMD 120

Query: 121 HNML-RFRNGSSSSSSNSSRS-HYS----------------RCSSISNNSISIPTNSKPR 180
           H  L RF + SSSS S+S+RS HYS                   S SN+S +  + SKP 
Sbjct: 121 HGSLSRFTSISSSSRSSSTRSSHYSIGSSNSITVTARNFNSNSKSNSNSSSTSNSKSKPI 180

Query: 181 TQNNVFHSHPSPTPQIRSFST--FGRRSRSRSSSRWDFFRVGLLRTPGMELHDLKTRTTV 240
              N F++HPSP PQIR   T      SR++ +S WDFFR+GL+R P +EL DLK R+  
Sbjct: 181 KIRNNFNTHPSPKPQIRLSKTRPVNVSSRNQKTSMWDFFRLGLVRAPELELQDLKVRSNN 240

Query: 241 SNAVPTVGQKTTASFLGVVSCKKSVETIPAAKKIKNWSGNIGKKRNEKGKG-----IGIR 298
           +NA     + + +      S   S  T  +  KI N SG + + + +  KG     IG+ 
Sbjct: 241 NNA----NRNSVSRNSSCNSSNSSSSTKNSTSKIVNNSGEVARNQQDLNKGFLEKRIGLF 300

[Close]

BLAST of CmoCh02G005200.1 vs. NCBI nr
Match: gi|823206427|ref|XP_012437092.1| (PREDICTED: uncharacterized protein LOC105763405 [Gossypium raimondii])

HSP 1 Score: 143.3 bits (360), Expect = 7.0e-31
Identity = 142/346 (41.04%), Postives = 189/346 (54.62%), Query Frame = 1


Query: 2   ATTIHGEEHDKQDEDEEEALSLCDLPV---KEKQQPSLLNENP-------ITEDFDFNHW 61
           A+    E+  + +E+EEEALSLCDLPV   KE+ Q    NE           EDF+F  W
Sbjct: 13  ASNCDEEQKCEAEEEEEEALSLCDLPVNLIKEENQIQPRNEEDGESQAIKTEEDFNFGSW 72

Query: 62  PPPPSPPP-MCAADDIFFQGHLLPLRLSVSSDNT--HNHFFSKPLSARSESMDHNML-RF 121
               S  P MCAAD++FF+G +LPL +S+SSD++    H        RSES+DH  L RF
Sbjct: 73  DGCLSTKPEMCAADEVFFKGQILPLCVSISSDSSLIWCHRQDSQNKPRSESIDHGSLSRF 132

Query: 122 RNGSSSS-SSNSSRSHYSRCSSISN--------NSISIPTNSKPRTQNNVFHSHPSPTPQ 181
            + +SSS SS++  SHYS  SS S         NSI+  + S P    N F++HPSP PQ
Sbjct: 133 TSVTSSSRSSSTGSSHYSTNSSNSTTVTAATSFNSIT-SSKSNPNKSINNFNTHPSPKPQ 192

Query: 182 IRSFST----FGRRSRSRSSSRWDFFRVGLLRTPGMELHDLKTRTTVSN--AVPTVGQKT 241
           IR   T            SSS WDFFR+GL+R P +E H+LK RT  +N  +  +V + +
Sbjct: 193 IRLSKTRPMNISSSRNQTSSSVWDFFRLGLVRAPELEFHELKIRTNNNNNPSRNSVSRNS 252

Query: 242 TAS-----------FL--GVVS-CKKS---VETIPAAKKIKNWSGNIGKKRNEKGKGI-- 298
           + S           FL  G+ S CK S   VET+P   KI      + KK++EK K +  
Sbjct: 253 SCSSSNSQLDSIKGFLRKGLFSGCKCSVNVVETVP-LNKIAVIKSMMIKKKSEKEKAMFQ 312

The following BLAST results are available for this feature:

BLAST of CmoCh02G005200.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G005200.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPT6_CUCSA	3.8e-84	65.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G277620 PE=4 SV=1	[more]
A0A0D2RFS0_GOSRA	5.2e-33	38.67	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G028600 PE=4 SV=1	[more]
A0A061DNT4_THECC	4.9e-31	36.69	Uncharacterized protein OS=Theobroma cacao GN=TCM_000746 PE=4 SV=1	[more]
A0A0D2PQT2_GOSRA	4.9e-31	41.04	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G080000 PE=4 SV=1	[more]
U7DVN2_POPTR	2.3e-28	35.11	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0318s00200g PE=4 SV=1	[more]

BLAST of CmoCh02G005200.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G67350.1	5.2e-16	30.29	unknown protein	[more]

BLAST of CmoCh02G005200.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778669884\|ref\|XP_011649316.1\|	5.4e-84	65.00	PREDICTED: homeobox protein 6-like [Cucumis sativus]	[more]
gi\|659115855\|ref\|XP_008457772.1\|	8.7e-82	65.42	PREDICTED: histone-lysine N-methyltransferase, H3 lysine-79 specific [Cucumis me...	[more]
gi\|823139478\|ref\|XP_012469599.1\|	7.5e-33	38.67	PREDICTED: probable membrane-associated kinase regulator 1 [Gossypium raimondii]	[more]
gi\|590705501\|ref\|XP_007047456.1\|	7.0e-31	36.69	Uncharacterized protein TCM_000746 [Theobroma cacao]	[more]
gi\|823206427\|ref\|XP_012437092.1\|	7.0e-31	41.04	PREDICTED: uncharacterized protein LOC105763405 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G005200	CmoCh02G005200	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G005200.1	CmoCh02G005200.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G005200.1.exon.3	CmoCh02G005200.1.exon.3	exon
CmoCh02G005200.1.exon.2	CmoCh02G005200.1.exon.2	exon
CmoCh02G005200.1.exon.1	CmoCh02G005200.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G005200.1.five_prime_UTR.1	CmoCh02G005200.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G005200.1.CDS.1	CmoCh02G005200.1.CDS.1	CDS
CmoCh02G005200.1.CDS.2	CmoCh02G005200.1.CDS.2	CDS
CmoCh02G005200.1.CDS.3	CmoCh02G005200.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 257..277 scor
None	No IPR available	PANTHER	PTHR33922	FAMILY NOT NAMED	coord: 8..300 score: 1.5
None	No IPR available	PANTHER	PTHR33922:SF2	SUBFAMILY NOT NAMED	coord: 8..300 score: 1.5