CmaCh20G010000.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GACAGCCGGTGCGGTGACGGTTCGTTTAAGTCTCCTCCGGTAACAGCCCGGTAAGCATTAGGGGGCTTAAGTCACAGTCACAGTCACAGTTTATTATCTTCAGAAACTGCAGCCATTGAGCTAAGAAATAAAATCCCAGTCTCCTCGTTCGAACCTCCCCGACCTCGGCGAGTGTTGAGGGTTTTTTTTTTTTTCTTTTTTATTTTTGTTGATTCGTTGTTGAGATTTTTATCGTGAAGATTTTCGCATGGAGTCGATCGGTTGTAGTTTCACTTCCTTATCGCTTGCGCAATTTAGGGCCAATAGTTTTTCGATTCAGGAGCTGTTGTTTGGTCCTCGCCGGAGGCCTCCATCGCCGATTGTTCATGCATCGGTTTCTCAGAGCTTTCCGGCGTCTTCTCGCTTTCCGGAGCAGCGGAAATCTACTTCTCTTTCCGCTAGCGGCACCTTGATGGCCAATTCCGCGCCGGTGTGTTGTTCTGTTTTCTTTTTTTGTTTGTAATGGTGAATTCGAGTCGTTGATTATCTTGTCTCGAATGTTTCGTTGTGATTGAGATGAATATACTTGATTTACCAGAAGAAACTTCCCTCTAGGCCTTTGATTTACCAAAATATAGAACTTCACTTCACTGCTAAAAAATTCTTCCCCCCTCAAGTTCTCTGCATAAAACCAACCAGATGATCATATATAAGTTCATTCTGAAATGAATCCTGAAAAAAATTCCTCATAGTTTGTCTTCCCTGTACAGAAGCTCTCAAGTTAGTGGATGTTGGTGAAAAAAAAGTGTTTACCATCTCCTTCTTTGATCCACTCACTTCGGAATTGAAATATATTCTAATGATCATTGTTCTACTGAATAGCTGTACTATTTTTTCCAAGGTGTTAAAAATTTATTCTTCTTTCTTTAATATTTTTATATGCAGTCGAGAAGTGGTGTATACACAGTTGGTGACTTCATGACTAGGAGAGAGGAGTTGCATGTCGTGAAGCCCACAACCAGTGTCGATGAAGGTAATTGAAATTTTTGGATATTTTCTTCCAACCTATTGGAAAAATGTGGCTTATATTGTGTCTGTTTATGCATACAGCATTAGAAATTCTGGTGGAAAAAAGGATCACGGGATTTCCAGTAATTGATGACAATTGGAACTTGGTATCATTTCATTTCCCATATTTATAACAGAGATTTCTCTACTATGGTTATGTTTTTATCTTGTTGTCCAGTTTGCAAGTACTTCTGAAGTTGTTGAGTTCTGTCCAGGATTTTCCATCAAATTGTTTACGTGATTTGTCAAGCTTTTACTTTTCACACTATGGCTTGTATGATCATGAGAGAATCTAATTTGCAGTACTACGCATCCAGAATTAAATTGGGAATCCATTTAATGCTTATAATTTGTGTTAAATGCTCATGTGAATTTCTTTGTGGCCCGTTTAACTGCTGCATTAACAATGAAGCGTATGATTGATTTAAGTGGCCTAACATTGGATACATCGACGCTTATAATAGAAATTACTTCATGATGTAGGTTGGCGTAGTTTCAGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTATATTTGAAATTTATTGTTATTCCTGTCAACAAGTTGTCTACTTCCACTCTTTGCCACTACCATTGTTTATCCTGTTTGAAAAGGATTGCTTAGCTATGATTGTTTTCCAGCAAAGTTACCGAAAGTGTTAATAAAGAAGAGAGACTTTAGCTTTTCTAGTATCATTTATAACTCGTGAATTATGTTAGCCATCACCTTAATGTGAATATTTGAGGTTGGAGAAGAGGGTGAAGAATGTAGCAAATTCTTGTTGTTATGAAATTTGAGTCATTCTTTGATCTCAAGAAAAGCGACTAATTTCCTTTTCTATATTACAAATGATTTAGTAATATGACGAAATTGGTATGACTGCACTTATAAAAGTTCCAAGTTTTTACAGTGTAAAAAAATTTCAATGTTCTAATTAGGTGGTGGAAGGACAGATCCAAGTATGTTTCCTGAAGTTGAGAGCTCCTGGAAGGTATGCAATTACCTCCTTTTCTGGCGTTTATTTGCAGTTATTTTGTTTCACATCTTTTGCCATTAGTGTTCCTGATGACTTTATTTGTGCAATGATTTCATCTGAGTATTAAAAGAAGTGGAAAACTCAACTTTATATATATATAAAAAAAGTAGATAAAGTAAAAGTTACTCTACTAATTCGTTGAAAAGCGCTTTATTTCCCGAGTTTAGGTCTTTCAATTTTACGAACGCCACCAACACTTCAGGCTATATTTGCAAGAAGCATGAATTTAAGTTTACTGGTTAAAGATTTCATTCTCAAGCGTAGTGTTTATTTCTCACTGATCACTGATTTAGGCCTTGGTTTGTCTGACTTCAAATTCATGTTAATCTGTCATTTACTTATTTCAACAGTCTGCTACTCACTAGTTTGTAGAGGACATGAAATGGAAGTGATTTCTCTAATCCAAAATCATCCTTGTAGACATTCAATGAGGTACAAAGGCTCCTCAGCAAAACTAACGGGAAGGTGATCGGCGATTTGATGACACCAGCGCCTCTTGTCGTCCGAGAAACCACCAATCTTGAGGATGCTGCTAGGTTAAAACATGCTTGTCTCTTTCCGTGTATCTTCCAACTGTTTACTGGTGTCAGAATTTTGAAGCATTCCTTTCTGTTTACCAAATGCAGATTATTGCTTAAGACAAAGTATCGCCGGCTACCAGTGGTAGATGCCAAGGGAAAGCTGGTAAGAGATCTATTCTTCTACTGTTCTAATTTGAATGAATGGTTGAGTTGTTGTAGCGTGTTGCGTAAAATGATGAAAGCTTTATTAATGAAGGTTGGAATTATTACAAGAGGCAATGTGGTAAGAGCTGCTCTACAAATGAAGCATGCCCAAGAAAACTGAACATCATTTTCTCAAATCATGCATGCTGTTGGATTCTGAAGTGCAATCATACAGTTTTGGCTCATGATTGTATTAACATCATCACGATTATATTGTGTTGTAGTTGGCCATTTGAGCAAGCTGTAGAAGTTGGGAATTAGGTATTAGACCAGACTTTAAAGTGTCAAATAGGCGTCAGGCTATTCAATGTTTGTATTTTTCTAGTACTTTTAATGCTCAAGCTTGAAATTAGATCTTTGTATTTAATACAAAATTAAAATTCTAAACATTTATTGCTTTGGGTATGAATTAAACTCTAATCTAAGGCAGAGTTGTGAGTAGGTAAAATTTTGAATTATGGTTAATTTTAGCGTATCTTGTTAAGCCACTGTGCTACTTTAATAGATCAAAGGGCT GACAGCCGGTGCGGTGACGGTTCGTTTAAGTCTCCTCCGGTAACAGCCCGGTAAGCATTAGGGGGCTTAAGTCACAGTCACAGTCACAGTTTATTATCTTCAGAAACTGCAGCCATTGAGCTAAGAAATAAAATCCCAGTCTCCTCGTTCGAACCTCCCCGACCTCGGCGAGTGTTGAGGGTTTTTTTTTTTTTCTTTTTTATTTTTGTTGATTCGTTGTTGAGATTTTTATCGTGAAGATTTTCGCATGGAGTCGATCGGTTGTAGTTTCACTTCCTTATCGCTTGCGCAATTTAGGGCCAATAGTTTTTCGATTCAGGAGCTGTTGTTTGGTCCTCGCCGGAGGCCTCCATCGCCGATTGTTCATGCATCGGTTTCTCAGAGCTTTCCGGCGTCTTCTCGCTTTCCGGAGCAGCGGAAATCTACTTCTCTTTCCGCTAGCGGCACCTTGATGGCCAATTCCGCGCCGTCGAGAAGTGGTGTATACACAGTTGGTGACTTCATGACTAGGAGAGAGGAGTTGCATGTCGTGAAGCCCACAACCAGTGTCGATGAAGCATTAGAAATTCTGGTGGAAAAAAGGATCACGGGATTTCCAGTAATTGATGACAATTGGAACTTGGTTGGCGTAGTTTCAGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTGGTGGAAGGACAGATCCAAGTATGTTTCCTGAAGTTGAGAGCTCCTGGAAGACATTCAATGAGGTACAAAGGCTCCTCAGCAAAACTAACGGGAAGGTGATCGGCGATTTGATGACACCAGCGCCTCTTGTCGTCCGAGAAACCACCAATCTTGAGGATGCTGCTAGATTATTGCTTAAGACAAAGTATCGCCGGCTACCAGTGGTAGATGCCAAGGGAAAGCTGGTTGGAATTATTACAAGAGGCAATGTGGTAAGAGCTGCTCTACAAATGAAGCATGCCCAAGAAAACTGAACATCATTTTCTCAAATCATGCATGCTGTTGGATTCTGAAGTGCAATCATACAGTTTTGGCTCATGATTGTATTAACATCATCACGATTATATTGTGTTGTAGTTGGCCATTTGAGCAAGCTGTAGAAGTTGGGAATTAGGTATTAGACCAGACTTTAAAGTGTCAAATAGGCGTCAGGCTATTCAATGTTTGTATTTTTCTAGTACTTTTAATGCTCAAGCTTGAAATTAGATCTTTGTATTTAATACAAAATTAAAATTCTAAACATTTATTGCTTTGGGTATGAATTAAACTCTAATCTAAGGCAGAGTTGTGAGTAGGTAAAATTTTGAATTATGGTTAATTTTAGCGTATCTTGTTAAGCCACTGTGCTACTTTAATAGATCAAAGGGCT ATGGAGTCGATCGGTTGTAGTTTCACTTCCTTATCGCTTGCGCAATTTAGGGCCAATAGTTTTTCGATTCAGGAGCTGTTGTTTGGTCCTCGCCGGAGGCCTCCATCGCCGATTGTTCATGCATCGGTTTCTCAGAGCTTTCCGGCGTCTTCTCGCTTTCCGGAGCAGCGGAAATCTACTTCTCTTTCCGCTAGCGGCACCTTGATGGCCAATTCCGCGCCGTCGAGAAGTGGTGTATACACAGTTGGTGACTTCATGACTAGGAGAGAGGAGTTGCATGTCGTGAAGCCCACAACCAGTGTCGATGAAGCATTAGAAATTCTGGTGGAAAAAAGGATCACGGGATTTCCAGTAATTGATGACAATTGGAACTTGGTTGGCGTAGTTTCAGACTATGACTTGTTAGCACTAGACTCCATCTCAGGTGGTGGAAGGACAGATCCAAGTATGTTTCCTGAAGTTGAGAGCTCCTGGAAGACATTCAATGAGGTACAAAGGCTCCTCAGCAAAACTAACGGGAAGGTGATCGGCGATTTGATGACACCAGCGCCTCTTGTCGTCCGAGAAACCACCAATCTTGAGGATGCTGCTAGATTATTGCTTAAGACAAAGTATCGCCGGCTACCAGTGGTAGATGCCAAGGGAAAGCTGGTTGGAATTATTACAAGAGGCAATGTGGTAAGAGCTGCTCTACAAATGAAGCATGCCCAAGAAAACTGA MESIGCSFTSLSLAQFRANSFSIQELLFGPRRRPPSPIVHASVSQSFPASSRFPEQRKSTSLSASGTLMANSAPSRSGVYTVGDFMTRREELHVVKPTTSVDEALEILVEKRITGFPVIDDNWNLVGVVSDYDLLALDSISGGGRTDPSMFPEVESSWKTFNEVQRLLSKTNGKVIGDLMTPAPLVVRETTNLEDAARLLLKTKYRRLPVVDAKGKLVGIITRGNVVRAALQMKHAQEN
BLAST of CmaCh20G010000.1 vs. Swiss-Prot
Match: CBSX1_ARATH (CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2) HSP 1 Score: 295.4 bits (755), Expect = 5.5e-79 Identity = 155/226 (68.58%), Postives = 182/226 (80.53%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. Swiss-Prot
Match: CBSX2_ARATH (CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 3.6e-70 Identity = 140/221 (63.35%), Postives = 175/221 (79.19%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. Swiss-Prot
Match: Y1426_METJA (Uncharacterized protein MJ1426 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1426 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.3e-11 Identity = 39/143 (27.27%), Postives = 77/143 (53.85%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. Swiss-Prot
Match: Y8960_DICDI (CBS domain-containing protein DDB_G0289609 OS=Dictyostelium discoideum GN=DDB_G0289609 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.0e-08 Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. Swiss-Prot
Match: IMDH_AQUAE (Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 6.6e-08 Identity = 40/135 (29.63%), Postives = 67/135 (49.63%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. TrEMBL
Match: A0A0A0LSY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G152500 PE=4 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 5.3e-105 Identity = 202/239 (84.52%), Postives = 217/239 (90.79%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. TrEMBL
Match: F6H4H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00200 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 2.6e-80 Identity = 161/213 (75.59%), Postives = 185/213 (86.85%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. TrEMBL
Match: A0A067GUY1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025613mg PE=4 SV=1) HSP 1 Score: 305.8 bits (782), Expect = 4.5e-80 Identity = 156/190 (82.11%), Postives = 173/190 (91.05%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. TrEMBL
Match: V4UIP6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026357mg PE=4 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 1.0e-79 Identity = 156/190 (82.11%), Postives = 172/190 (90.53%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. TrEMBL
Match: A0A067GUL0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025613mg PE=4 SV=1) HSP 1 Score: 299.7 bits (766), Expect = 3.2e-78 Identity = 156/195 (80.00%), Postives = 173/195 (88.72%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. TAIR10
Match: AT4G36910.1 (AT4G36910.1 Cystathionine beta-synthase (CBS) family protein) HSP 1 Score: 295.4 bits (755), Expect = 3.1e-80 Identity = 155/226 (68.58%), Postives = 182/226 (80.53%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. TAIR10
Match: AT4G34120.1 (AT4G34120.1 Cystathionine beta-synthase (CBS) family protein) HSP 1 Score: 266.2 bits (679), Expect = 2.0e-71 Identity = 140/221 (63.35%), Postives = 175/221 (79.19%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. NCBI nr
Match: gi|449443418|ref|XP_004139474.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]) HSP 1 Score: 388.7 bits (997), Expect = 7.6e-105 Identity = 202/239 (84.52%), Postives = 217/239 (90.79%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. NCBI nr
Match: gi|659071762|ref|XP_008461810.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis melo]) HSP 1 Score: 382.5 bits (981), Expect = 5.4e-103 Identity = 201/239 (84.10%), Postives = 215/239 (89.96%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. NCBI nr
Match: gi|225438783|ref|XP_002283079.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Vitis vinifera]) HSP 1 Score: 306.6 bits (784), Expect = 3.8e-80 Identity = 161/213 (75.59%), Postives = 185/213 (86.85%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. NCBI nr
Match: gi|641860427|gb|KDO79116.1| (hypothetical protein CISIN_1g025613mg [Citrus sinensis]) HSP 1 Score: 305.8 bits (782), Expect = 6.5e-80 Identity = 156/190 (82.11%), Postives = 173/190 (91.05%), Query Frame = 1
BLAST of CmaCh20G010000.1 vs. NCBI nr
Match: gi|568883420|ref|XP_006494468.1| (PREDICTED: CBS domain-containing protein CBSX1, chloroplastic isoform X1 [Citrus sinensis]) HSP 1 Score: 305.8 bits (782), Expect = 6.5e-80 Identity = 156/190 (82.11%), Postives = 173/190 (91.05%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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