CmaCh05G005890.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G005890.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related
Location	Cma_Chr05 : 2920754 .. 2921443 (+)
Sequence length	690

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCGTTGCCTCTACTTCGTCGTCCCCACCGGACGGTCCCCGTCTTCACCTTCATCGGTTCAAGCCCTCCCAAGCTGTGGCTGACCGGATTATTCGAGCTCTCCACCATCACCTCCACCTCCTTTACCGCTCCAATTCTAACTTCTTTGTGTTGGGAGCCACAGGCAATGTTTACATCGTGACTCTATCCTCCACCCCCTCGTGTACTTGTCCCGATCGTATTACCCCATGCAAACACATACTATTTATCTACATTCGAGCCTTGGGCTTGTCGCTTGACGACGTATGTCTTCGGAGGAGAACACTTCGACCTTGCCAGTTGAATCGTTTGCTTGCTGCACCTATAATGTTAGAATCACTTGCAGAGATTGGCATACGTAGAATATTTCATCAACAATTCTTTCAGGTAAAAGAAAGAGGTTCTTCTGCAAATGTTGTGGAAGAAGGGACTGCATGTCCTGTTTGTTTGGATGATATGAAGAAGAACGACCGTGTTGTAGCTTGTTCGACGTGTCGAAATCTTGTTCATGAAGATTGTTTCTCAAGGTGGAAACGAAGCAAGGGAAGGAGAAGTGTTAGTTGCGTAGTGTGTAGGGCACGGTGGAAAGAGACGACAGATCAACAAAAGTATTTGAATTTGTCTGCCTATGTCAACGAACACGACGTAGTTGACAACAATCTCTAG

mRNA sequence

ATGGAGTCCGTTGCCTCTACTTCGTCGTCCCCACCGGACGGTCCCCGTCTTCACCTTCATCGGTTCAAGCCCTCCCAAGCTGTGGCTGACCGGATTATTCGAGCTCTCCACCATCACCTCCACCTCCTTTACCGCTCCAATTCTAACTTCTTTGTGTTGGGAGCCACAGGCAATGTTTACATCGTGACTCTATCCTCCACCCCCTCGTGTACTTGTCCCGATCGTATTACCCCATGCAAACACATACTATTTATCTACATTCGAGCCTTGGGCTTGTCGCTTGACGACGTATGTCTTCGGAGGAGAACACTTCGACCTTGCCAGTTGAATCGTTTGCTTGCTGCACCTATAATGTTAGAATCACTTGCAGAGATTGGCATACGTAGAATATTTCATCAACAATTCTTTCAGGTAAAAGAAAGAGGTTCTTCTGCAAATGTTGTGGAAGAAGGGACTGCATGTCCTGTTTGTTTGGATGATATGAAGAAGAACGACCGTGTTGTAGCTTGTTCGACGTGTCGAAATCTTGTTCATGAAGATTGTTTCTCAAGGTGGAAACGAAGCAAGGGAAGGAGAAGTGTTAGTTGCGTAGTGTGTAGGGCACGGTGGAAAGAGACGACAGATCAACAAAAGTATTTGAATTTGTCTGCCTATGTCAACGAACACGACGTAGTTGACAACAATCTCTAG

Coding sequence (CDS)

ATGGAGTCCGTTGCCTCTACTTCGTCGTCCCCACCGGACGGTCCCCGTCTTCACCTTCATCGGTTCAAGCCCTCCCAAGCTGTGGCTGACCGGATTATTCGAGCTCTCCACCATCACCTCCACCTCCTTTACCGCTCCAATTCTAACTTCTTTGTGTTGGGAGCCACAGGCAATGTTTACATCGTGACTCTATCCTCCACCCCCTCGTGTACTTGTCCCGATCGTATTACCCCATGCAAACACATACTATTTATCTACATTCGAGCCTTGGGCTTGTCGCTTGACGACGTATGTCTTCGGAGGAGAACACTTCGACCTTGCCAGTTGAATCGTTTGCTTGCTGCACCTATAATGTTAGAATCACTTGCAGAGATTGGCATACGTAGAATATTTCATCAACAATTCTTTCAGGTAAAAGAAAGAGGTTCTTCTGCAAATGTTGTGGAAGAAGGGACTGCATGTCCTGTTTGTTTGGATGATATGAAGAAGAACGACCGTGTTGTAGCTTGTTCGACGTGTCGAAATCTTGTTCATGAAGATTGTTTCTCAAGGTGGAAACGAAGCAAGGGAAGGAGAAGTGTTAGTTGCGTAGTGTGTAGGGCACGGTGGAAAGAGACGACAGATCAACAAAAGTATTTGAATTTGTCTGCCTATGTCAACGAACACGACGTAGTTGACAACAATCTCTAG

Protein sequence

MESVASTSSSPPDGPRLHLHRFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGATGNVYIVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNLVHEDCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNEHDVVDNNL

Homology

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BLAST of CmaCh05G005890.1 vs. TrEMBL
Match: A0A0A0LS10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373540 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 4.9e-100
Identity = 188/239 (78.66%), Postives = 209/239 (87.45%), Query Frame = 1


Query: 1   MESVASTSSSPPDGPRLHLHRFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGATGNVY 60
           MESVASTSS P   PR     FKPSQ VADRI+RALHHHL LL+RS SNFFVLGATGNVY
Sbjct: 1   MESVASTSS-PHSVPR-----FKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVY 60

Query: 61  IVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLE 120
           IV+LSSTPSCTCPDRITPCKHILFIY++ALGLSLDDVCLRRRTLRPCQLNRLLAAPIML+
Sbjct: 61  IVSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLK 120

Query: 121 SLAEIGIRRIFHQQFFQVKERGSSANV--------VEEGTACPVCLDDMKKNDRVVACST 180
           SLAEIG+R++FHQQFFQV +R +S++         +E+G+ACPVCLDDMKK DRVVACST
Sbjct: 121 SLAEIGLRKVFHQQFFQVNDRAASSSSSSSVTVEDMEDGSACPVCLDDMKKKDRVVACST 180

Query: 181 CRNLVHEDCFSRWKRSKGRRSVSCVVCRARWKETTD-QQKYLNLSAY-VNEHDVVDNNL 230
           CRNLVHEDCF+RWKRSKGRR+VSCVVCRARWK+T D QQKYLNLSAY +NEHD +D  L
Sbjct: 181 CRNLVHEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQQKYLNLSAYIINEHDTIDATL 233

[Close]

BLAST of CmaCh05G005890.1 vs. TrEMBL
Match: A0A0D2V7W4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G106200 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.4e-78
Identity = 149/233 (63.95%), Postives = 182/233 (78.11%), Query Frame = 1


Query: 3   SVASTSSSP-PDGPRLHLH------RFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGA 62
           S +S+SS+P P+    HLH      RFKP+Q VA+RI RAL H L LL+RS+S+FFVLGA
Sbjct: 11  SSSSSSSTPRPNNHHHHLHYTRLHYRFKPTQPVAERIARALRHPLFLLHRSDSDFFVLGA 70

Query: 63  TGNVYIVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAA 122
           TGNVY VTLSSTPSCTCPDR TPCKHILF+ IRALG+S+DD CLRRRTLRPC+L+RLL  
Sbjct: 71  TGNVYTVTLSSTPSCTCPDRTTPCKHILFVLIRALGVSVDDACLRRRTLRPCRLSRLLGT 130

Query: 123 PIMLESLAEIGIRRIFHQQFFQVKERGSSANV--VEEGTACPVCLDDMKKNDRVVACSTC 182
               E+LAE G+R  FHQ F Q K +G S  V  +EEGT CPVCL++M+K ++V ACSTC
Sbjct: 131 LTSPEALAEAGVRERFHQLFSQRKTQGESGGVKEIEEGTVCPVCLEEMEKGEKVAACSTC 190

Query: 183 RNLVHEDCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNEHDVVD 227
           RNL+HE+C  RWKRS+GRRS +CV+CRARW  ++DQ+KYLNL+AY+   DV D
Sbjct: 191 RNLIHEECLMRWKRSRGRRSANCVICRARW--SSDQEKYLNLAAYIGRDDVGD 241

[Close]

BLAST of CmaCh05G005890.1 vs. TrEMBL
Match: A0A061GJR6_THECC (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase-related, putative OS=Theobroma cacao GN=TCM_037201 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.0e-78
Identity = 146/230 (63.48%), Postives = 184/230 (80.00%), Query Frame = 1


Query: 1   MESVASTSSSPPD-----GPRLHLHRFKPSQAVADRIIRALHHHLHLLYRSNSN-FFVLG 60
           M+SV+S SS+PP+       RLH HRFKP Q VADRI+RAL H L LL+RS+SN FF+LG
Sbjct: 1   MDSVSSPSSTPPNINDHHHNRLH-HRFKPIQPVADRIVRALRHPLFLLHRSDSNLFFILG 60

Query: 61  ATGNVYIVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLA 120
           ATGNVY V LS+TPSCTCPDR TPCKHILF+ IR LG+S+DD CLRRRTLRPC+LNRLL+
Sbjct: 61  ATGNVYTVALSATPSCTCPDRTTPCKHILFVLIRVLGVSIDDTCLRRRTLRPCRLNRLLS 120

Query: 121 APIMLESLAEIGIRRIFHQQFFQVKERGSSA---NVVEEGTACPVCLDDMKKNDRVVACS 180
            P   E+LA  GIR  FHQ ++Q K++G S+     +EEGT CPVCL++M+K ++V+ACS
Sbjct: 121 TPTSPEALAGAGIRERFHQLYYQAKKQGESSGGVKEIEEGTTCPVCLEEMEKGEKVLACS 180

Query: 181 TCRNLVHEDCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNE 222
           TCRNL+HE+C   WKRS+GRRS SCV+CRARW  + DQ+KYLNL+A++++
Sbjct: 181 TCRNLIHEECLMSWKRSRGRRSASCVICRARW--SADQEKYLNLAAFLSQ 227

[Close]

BLAST of CmaCh05G005890.1 vs. TrEMBL
Match: F6H3D1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03300 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 3.4e-77
Identity = 143/226 (63.27%), Postives = 174/226 (76.99%), Query Frame = 1


Query: 1   MESVASTSSSPPDGPRLHLHRFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGATGNVY 60
           MESVAS SS P    RLH  RFKP+Q VADRI+RA+ H L LL+RS SNFFVLGATGNVY
Sbjct: 1   MESVASNSSPPEH--RLH-PRFKPTQPVADRIVRAIRHRLRLLHRSESNFFVLGATGNVY 60

Query: 61  IVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLE 120
            VTLS+ PSCTCPDR TPCKHILF++I+ LG+SLDD CLRRRTLRPC L+ LL+ P   E
Sbjct: 61  TVTLSTNPSCTCPDRTTPCKHILFVFIKVLGVSLDDSCLRRRTLRPCLLSHLLSKPTSPE 120

Query: 121 SLAEIGIRRIFHQQFFQVKERGSSANV-VEEGTACPVCLDDMKKNDRVVACSTCRNLVHE 180
           ++A  G+R  FHQ F Q +E  S   + +E+GT CPVCLD+M + ++VVAC TCRN +HE
Sbjct: 121 AVAGAGVRERFHQLFLQAREGSSRPAIEIEDGTMCPVCLDEMGRGEKVVACGTCRNPIHE 180

Query: 181 DCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNEHDVV 226
           +C   WKR++GRRS SCV+CRARW   TDQ++YLNL+AYV + D V
Sbjct: 181 ECLLTWKRTRGRRSASCVICRARWSNRTDQERYLNLAAYVTDDDEV 223

[Close]

BLAST of CmaCh05G005890.1 vs. TrEMBL
Match: A0A0L9TEP4_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan561s000900 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 7.6e-77
Identity = 142/228 (62.28%), Postives = 173/228 (75.88%), Query Frame = 1


Query: 1   MESVASTSSSPPDGPRLHLH----RFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGAT 60
           MES AS S+S P+    H H    RFKPSQ ++DRI+RAL H L LL+R+ S FF+ GAT
Sbjct: 1   MESHASNSNSHPNHNNNHHHHHPPRFKPSQPISDRIVRALRHRLRLLHRAGSTFFIFGAT 60

Query: 61  GNVYIVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAAP 120
           GNVY VTLSSTPSCTCPDR TPCKHILF++IR LG+SLDDVCLRRRTLRPCQL RLL  P
Sbjct: 61  GNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRLLGKP 120

Query: 121 IMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNL 180
            + E++A   +R+ FHQ FF    R       EEG  CPVCL++M+K  ++VAC TCRN 
Sbjct: 121 TLPEAVAGGTLRQRFHQLFFGGGSRRPKIE-TEEGATCPVCLEEMEKEQKLVACGTCRNP 180

Query: 181 VHEDCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNEHDV 225
           VHE+C  RWKR++GRRS SCV+CRARW++T +Q +YLNLSAYV+E D+
Sbjct: 181 VHEECLMRWKRTRGRRSASCVICRARWRDTAEQDQYLNLSAYVSEDDI 227

[Close]

BLAST of CmaCh05G005890.1 vs. TAIR10
Match: AT5G11620.1 (AT5G11620.1 SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase (MAPKKK)-related)

HSP 1 Score: 189.1 bits (479), Expect = 3.0e-48
Identity = 114/262 (43.51%), Postives = 142/262 (54.20%), Query Frame = 1


Query: 1   MESVASTSSSPPDGPRLHLHRFKPSQAVADRIIRALHHHLHLLYRSNSN-FFVLGATGNV 60
           MESV S   SP    R   H    +Q VADRI+RAL H + LL+R N+  F VLGAT NV
Sbjct: 1   MESVGSNQISPYVSNRDQRHFL--AQPVADRILRALRHRIRLLHRPNAGTFHVLGATCNV 60

Query: 61  YIVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAAPIML 120
           Y VTL +TP+CTCPDR  PCKHILF+ IR LG+ LDD CLR+R LR C L  L +AP   
Sbjct: 61  YTVTLMATPTCTCPDRKKPCKHILFVLIRVLGIPLDDKCLRQRRLRTCLLFHLFSAPTRP 120

Query: 121 ESLAEIGIRRIFHQQF-FQVKERGSSAN-----------VVEEGTACPVCLDDM------ 180
           + LA   +++ F Q F     + G + N           V EE   CP+CLDD+      
Sbjct: 121 DCLASFRLQQRFLQLFPATTSQPGYTTNSSSSTSKMENEVDEEPATCPICLDDIIAIENV 180

Query: 181 --------KKNDRVVACSTCRNLVHEDCFSRWKRSKGRRSVSCVVCRARW---------- 222
                   +K   VV C  C+N VH++C   W++S+GRR   CVVCRARW          
Sbjct: 181 DGGNGGGKEKETAVVKCRVCKNKVHDECMLAWRKSRGRRPAICVVCRARWPANRSSKNPN 240

[Close]

BLAST of CmaCh05G005890.1 vs. NCBI nr
Match: gi|659088489|ref|XP_008445008.1| (PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Cucumis melo])

HSP 1 Score: 388.7 bits (997), Expect = 7.3e-105
Identity = 189/236 (80.08%), Postives = 211/236 (89.41%), Query Frame = 1


Query: 1   MESVASTSSSPPDGPRLHLHRFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGATGNVY 60
           MESVASTSS  P      + RFKPSQ VADRI+RALHHHL LL+RS SNFFVLGATGNVY
Sbjct: 1   MESVASTSSPRP------VPRFKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVY 60

Query: 61  IVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLE 120
           IV+LSSTPSCTCPDRITPCKHILFIY++ALGLSLDDVCLRRRTLRPCQLNRLLAAPIML+
Sbjct: 61  IVSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLK 120

Query: 121 SLAEIGIRRIFHQQFFQVKERGSSANV-------VEEGTACPVCLDDMKKNDRVVACSTC 180
           SLAEIG+R++FHQQFFQV +R  S++        +E+GTACPVCLDDMKKNDRVVACSTC
Sbjct: 121 SLAEIGLRKVFHQQFFQVNDRACSSSSSCVTVEDMEDGTACPVCLDDMKKNDRVVACSTC 180

Query: 181 RNLVHEDCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNEHDVVDNNL 230
           RNLVHEDCF+RWKRSKGRR+VSCVVCRARWK+T D+QKYLNLSAY+NEHD +D+NL
Sbjct: 181 RNLVHEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQKYLNLSAYINEHDTIDDNL 230

[Close]

BLAST of CmaCh05G005890.1 vs. NCBI nr
Match: gi|449461325|ref|XP_004148392.1| (PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Cucumis sativus])

HSP 1 Score: 372.1 bits (954), Expect = 7.0e-100
Identity = 188/239 (78.66%), Postives = 209/239 (87.45%), Query Frame = 1


Query: 1   MESVASTSSSPPDGPRLHLHRFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGATGNVY 60
           MESVASTSS P   PR     FKPSQ VADRI+RALHHHL LL+RS SNFFVLGATGNVY
Sbjct: 1   MESVASTSS-PHSVPR-----FKPSQPVADRIVRALHHHLRLLHRSGSNFFVLGATGNVY 60

Query: 61  IVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLE 120
           IV+LSSTPSCTCPDRITPCKHILFIY++ALGLSLDDVCLRRRTLRPCQLNRLLAAPIML+
Sbjct: 61  IVSLSSTPSCTCPDRITPCKHILFIYLQALGLSLDDVCLRRRTLRPCQLNRLLAAPIMLK 120

Query: 121 SLAEIGIRRIFHQQFFQVKERGSSANV--------VEEGTACPVCLDDMKKNDRVVACST 180
           SLAEIG+R++FHQQFFQV +R +S++         +E+G+ACPVCLDDMKK DRVVACST
Sbjct: 121 SLAEIGLRKVFHQQFFQVNDRAASSSSSSSVTVEDMEDGSACPVCLDDMKKKDRVVACST 180

Query: 181 CRNLVHEDCFSRWKRSKGRRSVSCVVCRARWKETTD-QQKYLNLSAY-VNEHDVVDNNL 230
           CRNLVHEDCF+RWKRSKGRR+VSCVVCRARWK+T D QQKYLNLSAY +NEHD +D  L
Sbjct: 181 CRNLVHEDCFTRWKRSKGRRNVSCVVCRARWKDTKDEQQKYLNLSAYIINEHDTIDATL 233

[Close]

BLAST of CmaCh05G005890.1 vs. NCBI nr
Match: gi|823231494|ref|XP_012448444.1| (PREDICTED: uncharacterized protein LOC105771548 [Gossypium raimondii])

HSP 1 Score: 300.1 bits (767), Expect = 3.4e-78
Identity = 149/233 (63.95%), Postives = 182/233 (78.11%), Query Frame = 1


Query: 3   SVASTSSSP-PDGPRLHLH------RFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGA 62
           S +S+SS+P P+    HLH      RFKP+Q VA+RI RAL H L LL+RS+S+FFVLGA
Sbjct: 11  SSSSSSSTPRPNNHHHHLHYTRLHYRFKPTQPVAERIARALRHPLFLLHRSDSDFFVLGA 70

Query: 63  TGNVYIVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAA 122
           TGNVY VTLSSTPSCTCPDR TPCKHILF+ IRALG+S+DD CLRRRTLRPC+L+RLL  
Sbjct: 71  TGNVYTVTLSSTPSCTCPDRTTPCKHILFVLIRALGVSVDDACLRRRTLRPCRLSRLLGT 130

Query: 123 PIMLESLAEIGIRRIFHQQFFQVKERGSSANV--VEEGTACPVCLDDMKKNDRVVACSTC 182
               E+LAE G+R  FHQ F Q K +G S  V  +EEGT CPVCL++M+K ++V ACSTC
Sbjct: 131 LTSPEALAEAGVRERFHQLFSQRKTQGESGGVKEIEEGTVCPVCLEEMEKGEKVAACSTC 190

Query: 183 RNLVHEDCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNEHDVVD 227
           RNL+HE+C  RWKRS+GRRS +CV+CRARW  ++DQ+KYLNL+AY+   DV D
Sbjct: 191 RNLIHEECLMRWKRSRGRRSANCVICRARW--SSDQEKYLNLAAYIGRDDVGD 241

[Close]

BLAST of CmaCh05G005890.1 vs. NCBI nr
Match: gi|590573510|ref|XP_007012142.1| (SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase-related, putative [Theobroma cacao])

HSP 1 Score: 299.3 bits (765), Expect = 5.8e-78
Identity = 146/230 (63.48%), Postives = 184/230 (80.00%), Query Frame = 1


Query: 1   MESVASTSSSPPD-----GPRLHLHRFKPSQAVADRIIRALHHHLHLLYRSNSN-FFVLG 60
           M+SV+S SS+PP+       RLH HRFKP Q VADRI+RAL H L LL+RS+SN FF+LG
Sbjct: 1   MDSVSSPSSTPPNINDHHHNRLH-HRFKPIQPVADRIVRALRHPLFLLHRSDSNLFFILG 60

Query: 61  ATGNVYIVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLA 120
           ATGNVY V LS+TPSCTCPDR TPCKHILF+ IR LG+S+DD CLRRRTLRPC+LNRLL+
Sbjct: 61  ATGNVYTVALSATPSCTCPDRTTPCKHILFVLIRVLGVSIDDTCLRRRTLRPCRLNRLLS 120

Query: 121 APIMLESLAEIGIRRIFHQQFFQVKERGSSA---NVVEEGTACPVCLDDMKKNDRVVACS 180
            P   E+LA  GIR  FHQ ++Q K++G S+     +EEGT CPVCL++M+K ++V+ACS
Sbjct: 121 TPTSPEALAGAGIRERFHQLYYQAKKQGESSGGVKEIEEGTTCPVCLEEMEKGEKVLACS 180

Query: 181 TCRNLVHEDCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNE 222
           TCRNL+HE+C   WKRS+GRRS SCV+CRARW  + DQ+KYLNL+A++++
Sbjct: 181 TCRNLIHEECLMSWKRSRGRRSASCVICRARW--SADQEKYLNLAAFLSQ 227

[Close]

BLAST of CmaCh05G005890.1 vs. NCBI nr
Match: gi|950973015|ref|XP_014500637.1| (PREDICTED: uncharacterized protein LOC106761588 [Vigna radiata var. radiata])

HSP 1 Score: 296.2 bits (757), Expect = 4.9e-77
Identity = 142/228 (62.28%), Postives = 173/228 (75.88%), Query Frame = 1


Query: 1   MESVASTSSSPPDGPRLHLH----RFKPSQAVADRIIRALHHHLHLLYRSNSNFFVLGAT 60
           MES AS S+S P+    H H    RFKPSQ ++DRI+RAL H L LL+R+ S FF+ GAT
Sbjct: 1   MESHASNSNSHPNHNNSHHHHHPPRFKPSQPISDRIVRALRHRLRLLHRAGSTFFIFGAT 60

Query: 61  GNVYIVTLSSTPSCTCPDRITPCKHILFIYIRALGLSLDDVCLRRRTLRPCQLNRLLAAP 120
           GNVY VTLSSTPSCTCPDR TPCKHILF++IR LG+SLDDVCLRRRTLRPCQL RLL  P
Sbjct: 61  GNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRLLGKP 120

Query: 121 IMLESLAEIGIRRIFHQQFFQVKERGSSANVVEEGTACPVCLDDMKKNDRVVACSTCRNL 180
            + E++A   +R+ FHQ FF    R       EEG  CPVCL++M+K  ++VAC TCRN 
Sbjct: 121 TLPEAVAGGTLRQRFHQLFFNGGSRRPKIE-TEEGATCPVCLEEMEKEQKLVACGTCRNP 180

Query: 181 VHEDCFSRWKRSKGRRSVSCVVCRARWKETTDQQKYLNLSAYVNEHDV 225
           VHE+C  RWKR++GRRS SCV+CRARW++T +Q +YLNLSAYV+E D+
Sbjct: 181 VHEECLMRWKRTRGRRSASCVICRARWRDTAEQDQYLNLSAYVSEDDI 227

The following BLAST results are available for this feature:

BLAST of CmaCh05G005890.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh05G005890.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LS10_CUCSA	4.9e-100	78.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G373540 PE=4 SV=1	[more]
A0A0D2V7W4_GOSRA	2.4e-78	63.95	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G106200 PE=4 SV=1	[more]
A0A061GJR6_THECC	4.0e-78	63.48	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase...	[more]
F6H3D1_VITVI	3.4e-77	63.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g03300 PE=4 SV=...	[more]
A0A0L9TEP4_PHAAN	7.6e-77	62.28	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan561s000900 PE=4 SV=1	[more]

BLAST of CmaCh05G005890.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G11620.1	3.0e-48	43.51	SWIM zinc finger family protein / mitogen-activated protein kinase k...	[more]

BLAST of CmaCh05G005890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088489\|ref\|XP_008445008.1\|	7.3e-105	80.08	PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Cucumis melo]	[more]
gi\|449461325\|ref\|XP_004148392.1\|	7.0e-100	78.66	PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Cucumis sativus]	[more]
gi\|823231494\|ref\|XP_012448444.1\|	3.4e-78	63.95	PREDICTED: uncharacterized protein LOC105771548 [Gossypium raimondii]	[more]
gi\|590573510\|ref\|XP_007012142.1\|	5.8e-78	63.48	SWIM zinc finger family protein / mitogen-activated protein kinase kinase kinase...	[more]
gi\|950973015\|ref\|XP_014500637.1\|	4.9e-77	62.28	PREDICTED: uncharacterized protein LOC106761588 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR007527	Znf_SWIM
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0016301	kinase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh05G005890	CmaCh05G005890	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh05G005890.1	CmaCh05G005890.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G005890.1.exon.1	CmaCh05G005890.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh05G005890.1.CDS.1	CmaCh05G005890.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 153..200 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 154..200 score: 9
IPR007527	Zinc finger, SWIM-type	PROFILE	PS50966	ZF_SWIM	coord: 60..90 score: 9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 148..214 score: 7.2
None	No IPR available	PANTHER	PTHR21540	RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2	coord: 1..226 score: 1.2
None	No IPR available	PANTHER	PTHR21540:SF1	PHD FAMILY PROTEIN	coord: 1..226 score: 1.2
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 147..216 score: 4.8