CmaCh05G001460.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G001460.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr05 : 649732 .. 649968 (-)
Sequence length237
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCAGCCTCCAATCTCAGTTCCTCACTTCCTATTTCGCCGTCGCACTATAGGACCACCGCGGTCTTCGCTCCTCATCGGCGGATCGCTTCTCCGTCAACAGCCGTGGGCGATGCTTTCTCGTCGTGTCGTACACATTTGACTCGCTCTCCACATCATCGATATTCGCTCAAGCTTCTGCGATGCAGTGGTAATTCGGAATCCCAATCTCTTGTGTTAGTCAATATTCGATGA

mRNA sequence

ATGAAAGCAGCCTCCAATCTCAGTTCCTCACTTCCTATTTCGCCGTCGCACTATAGGACCACCGCGGTCTTCGCTCCTCATCGGCGGATCGCTTCTCCGTCAACAGCCGTGGGCGATGCTTTCTCGTCGTGTCGTACACATTTGACTCGCTCTCCACATCATCGATATTCGCTCAAGCTTCTGCGATGCAGTGGTAATTCGGAATCCCAATCTCTTGTGTTAGTCAATATTCGATGA

Coding sequence (CDS)

ATGAAAGCAGCCTCCAATCTCAGTTCCTCACTTCCTATTTCGCCGTCGCACTATAGGACCACCGCGGTCTTCGCTCCTCATCGGCGGATCGCTTCTCCGTCAACAGCCGTGGGCGATGCTTTCTCGTCGTGTCGTACACATTTGACTCGCTCTCCACATCATCGATATTCGCTCAAGCTTCTGCGATGCAGTGGTAATTCGGAATCCCAATCTCTTGTGTTAGTCAATATTCGATGA

Protein sequence

MKAASNLSSSLPISPSHYRTTAVFAPHRRIASPSTAVGDAFSSCRTHLTRSPHHRYSLKLLRCSGNSESQSLVLVNIR
Homology
[Close]
BLAST of CmaCh05G001460.1 vs. TrEMBL
Match: A0A0A0LN96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354800 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-11
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MKAASNLSSSLPISPS--HY-RTTAVFAPHRR-IASPSTAVGDAFSSCRTHLTRSPHHRY 60
          MKA  +L+SSLP+SPS  HY RTTA+F P R  IAS STA+G AFSSCRTHLT  PHH  
Sbjct: 1  MKAVFDLTSSLPLSPSPSHYCRTTAIFTPSRDLIASTSTALGGAFSSCRTHLTHFPHHTS 60

Query: 61 SLKLLRCS 65
          S   LRC+
Sbjct: 61 SFSPLRCN 68

[Close]
BLAST of CmaCh05G001460.1 vs. NCBI nr
Match: gi|449450275|ref|XP_004142889.1| (PREDICTED: adenine phosphoribosyltransferase 1 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 7.9e-11
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 1 

Query: 1  MKAASNLSSSLPISPS--HY-RTTAVFAPHRR-IASPSTAVGDAFSSCRTHLTRSPHHRY 60
          MKA  +L+SSLP+SPS  HY RTTA+F P R  IAS STA+G AFSSCRTHLT  PHH  
Sbjct: 1  MKAVFDLTSSLPLSPSPSHYCRTTAIFTPSRDLIASTSTALGGAFSSCRTHLTHFPHHTS 60

Query: 61 SLKLLRCS 65
          S   LRC+
Sbjct: 61 SFSPLRCN 68

[Close]
BLAST of CmaCh05G001460.1 vs. NCBI nr
Match: gi|659087655|ref|XP_008444565.1| (PREDICTED: adenine phosphoribosyltransferase 1 isoform X1 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 8.8e-10
Identity = 43/69 (62.32%), Postives = 49/69 (71.01%), Query Frame = 1 

Query: 1  MKAASNLSSSLPISPS---HYRTTAVFAPHRRI-ASPSTAVGDAFSSCRTH-LTRSPHHR 60
          MKA  NL+SSLP+SPS   +YRTTA+F P   + ASPSTAVG AFSSCRTH LT  P H 
Sbjct: 1  MKAVFNLTSSLPLSPSPSHYYRTTAIFTPSPDLFASPSTAVGGAFSSCRTHLLTHFPQHP 60

Query: 61 YSLKLLRCS 65
           S   LRC+
Sbjct: 61 SSFSPLRCN 69

The following BLAST results are available for this feature:
BLAST of CmaCh05G001460.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh05G001460.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN96_CUCSA5.5e-1164.71Uncharacterized protein OS=Cucumis sativus GN=Csa_2G354800 PE=3 SV=1[more]
BLAST of CmaCh05G001460.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh05G001460.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450275|ref|XP_004142889.1|7.9e-1164.71PREDICTED: adenine phosphoribosyltransferase 1 [Cucumis sativus][more]
gi|659087655|ref|XP_008444565.1|8.8e-1062.32PREDICTED: adenine phosphoribosyltransferase 1 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055086 nucleobase-containing small molecule metabolic process
biological_process GO:1901564 organonitrogen compound metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016740 transferase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh05G001460CmaCh05G001460gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh05G001460.1CmaCh05G001460.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh05G001460.1.CDS.1CmaCh05G001460.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh05G001460.1.exon.1CmaCh05G001460.1.exon.1exon