CmaCh01G013090.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G013090.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionChromosome 3B, genomic scaffold, cultivar Chinese Spring
LocationCma_Chr01 : 9356465 .. 9362967 (+)
Sequence length1339
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCAATTGTAGCCGCAAATTTATGGGGAAATTGTTCAAGCTCCGCTTCCAGTCCCAGTAATGGAGACCAGAAGCCATAGATTTTTCACTTGAAAACAACAAAATCATGGCCTCCAATTTCATTACTGCGTTTCATTGCCCGAATCCACACTCTTCTTCTTCTTCTTATTCAAATCTGCAGCAGAATACAGTGCTCCTTTTGAAGTTCCATTCTCGTTGTTCATCTTCTTCGAGAAAATTCGCTGTTTCGGAGGGCGCTGAGGGTAGAGTTCAAGATGAAGAGCTTTTCATTTCGTCTTCTTCTGGTATGCATCAATTCACTGCTTCGTCTCTCTTTTCTTGTTGTTTAGTTATTCCTTCAAAATTGTGAGTAGGTTGATTCTTGTCTCTGTAATCCTATAGTTTAAGGCCGCTTATAATTAAAGAATCCTATTCGTAGTACTCAACGCTTGAGATTTTAAATTGTTTTTGAGAAATCCAAGTGGTCTATCGCTATAAATATAATAAACTAAACATGATCTTGCTTTTTCTTGTTAAATACATTTGTAGTTTCTTTGCTTTGACATGGCCTGATTCCATTTCCAATTCAGTTCTTGTGGTTTCAAAAATTTCAATATCATTCATATTATAGTTCTTATTATTTTAGTAAAGGTTATCAAACATTTGTTGTGGCCAATGAATAACAAAAACGCAATACAGAGAGCTATTTGTGGACAATATCCTCTGGTATTCCAAAACAACATTAGTCATGGCCATTTTTATAATTTTTCAATCAAAATGATGTCTTAAGAGCCAACCAAAATTTATGTCTCAAGTCAATTTTATGCATCACACCAAAATAATCTATCATAGAGTTCATTTTCAATATCTATGAACAACTTGCCATATGGGATTTTTGTTACACTTCTGTATATGATAACCTTTAAGCAAATAATGACGACGAAATATGAAAATTTTAGAAGTATAGAAATCAAATTGAAACTAGAGTTAAAGCGTTAGACTAAAAGTGTAGTTTAACGTACTCGGTTTAAAGATTAATCTTTTTTCTTTTCAAATGTAAAGGAGCATCTTCTTCTGCACGCACACAGCTTGATCTCTTGGAGCAACTCTCTTCCGGTAGCCAATTAGTTGATGGTAAGTGGGCTTATTTCATTGAAATGCATTAGTCTTATTTCATTGAAAAAGGTCATATATGTGAGATCCCACCTCGGTTGGAGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAAACCTCTACCTAGCAAATGCATTTTAAAAACCAAAAACCTTGAGGGAAGCCCAAAAGAAAAAGTCCAAAAATGATAATATCTACTAGCAGTGGGCTTGGGCGGTTCCAATTTCACTTGAACTTGCTGGGATTTTATGTTCTCAGGTTATGAGAGTGATGGCAATTACCAGAAAACTACGATCCGTGATCAGCTTGCACAATTGTTCAGAGACAGAGACGACGATTTTAGCATTCCATTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAACATCAAAAGACAAGAATACTTGAATGAAGTATCTCAAAGGAATGATTCAGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTCTGCCACCTATTGTAATATTAGGTATTGCTATACTGACTGGTTATGTGCAACTTTTTCCATGATATGCTGTTTATACAAACATCATATATATATATAGAAGTGGTAATATCTTGATATCCTTAACCCCGTGTTCATAGTTTCTATTGTTCAATTTTTAGTTCTATATTTCTTGAAAAGTTACGACCGGCTGCTAGAATTAGTCCCAATGGTTTGATAAAACTTTACAAAACAGTCCCTATCTAGAAACTATTTATGGGGTTTTATCAAATCACAAGGACCAAAATTCTAATTTTTAAAATCTTAAGGTCTAAACTTATAATTTAATATAAGTTTAGGATTTTGAACAGGATCCGTTCTTGATTTCTAAGGAGACCCACTCTGGTGTGTGCTTAGTGACATTGGTGCGAGTCCCAACAAGGTGCGATTGTGATACTTAGGCCCAAGGTGCCACCTATGCACCTTGTTTCAAAGAAGTGATACTCTTCTTTTGAGGCTCGTGCCGAGTGCTCAAGCCCAACTAAACACATTAACATTCTTAAAATCTCGAAAAACACTCAATTTTCTTAACCTTTACATTATAAAAAATTTATTTACATTCTTACAGTGAGTACGTCGTAAAAGAAAACTAAAGCCCTAAAGGGCTATTGCACTTTAGTCAAGTGCGCCTCGAGCTTTGGAAAACACGAGACACGAGTGAAGAACAATAACATTCACTCTCCATCTCTAACAAAATCTAGAAAATGAAACTTACAAATCCCAATAAGAAGAGCGAAATGATAAGAAGAGTGACAACAATCTCATGTTAGTGAAAACAACCTTTTGACAACTCTGTTTACTCCTTCAGCATGGATCAGTAGGCAGTTCCTTTTGCTTGTCATTTGGTGAGAGCCCTTGATCAGTAGATGTTACCAAATCACTGCCCAAAATAACTCCTTGCTTTTGTATATACTCCAGTTTGTCTTGGAATAGGTAAAAGAAGGAAATCAAAGAAATTTCAACAGTGAAAATTATGGTCCAAATTCGTATCCTTCGTGACGTTTTCTCGTGGTAAGCAAATAATCCTGAGTATACATTGAAAACTCCTAGGAGAGATACTGCAGTGCCAAGCATCCAGTGTATGAAAAACCATAGGCTTCTTGTTCTAGAGCCCCTGCCAGAATGAGAAAGGATTGGATTCAGAATTTGGTAGAGATGATCTTTAAGAAAGGGGCTCGTTGAGTTGCTTTCAGAAACAGTTTAATTTAAGCCTCGTTTGATAACCATTTAGCTTTTGAAACTTAAGCTTATAAACATTCCACCTATAAGGTCTAATAGTTATCAAATAAGGTCTTATTTATTTGTTTGTTCATAGTCTCGCAAACCGTTTTAAAACAGAATAAGATACTTGTGAGATCCCACATCGATTGGAGAGGGGAACGAGTGCCAACGAGGATGCTGGGTCTCAAAGGAGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAAAGAAGCATTCTTTATAAGGGTGTGGAAACTTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAAGAGAAGCTTGAAAGAGAAAGTTCAAAGAGGGCAACTGCTACTAACGGTGGAGTTGGGCAGTTACAAATGGTATTAGAGCCACAACTGGGTGATGTGTCAACGAGGAAGCTGATCCCAGAAGGGGGGTGAACATGAGGCGGTGTACCAGCAAGGACATTAGGCCCTGAAAGGGGGGTGGATTGAGGGGTCCCACATCGATTAAAGAAGGTAACGAGGCCAGCGAGGATGCTGGGCCCCAAAAGGGGGTGGATTGTGAGATCCCACATCGATGGGAGAGGGGAATGAAGCATTCTTTATAAGGGTGTGGAAACCTCTCAGACGCGTTTTAAAACCGTGAGGCTAATGACGATACGTAACAGACTAAAGCGGACAATATCTACTAGCGGTGGGCTTGGGTTGTTACAATACTACTCTGAAAACAACCTCACAATAACTCTTTCTAATAAACTATTGCTGCATATTTGAAGAAAATATGGAACTTTACCTCTTTGGCCTTACAATTCCAATCAATGCCTGTAGCCAGATCATCCCATATAGGCCAATCCCTATCCTTTGATGGTTATTATTGAAAGCATTGTTGAATTTCTTGATAGACATGACTGCTCCAGCTGTGACTAGTAATACAGAGAGTATCTGTTCATCATAATCAAGTTAAGATAATGTAATGAACCCATCTTTGTGATTAAAGGATCATCAAAATCCATCAAACTGCTACTATAAATTTGGGAATTTGAACTTAGTTTCTATTTGAGTATCTAATTAGTTAGAATGTGATGATGCCTGTCTTTTCTTTCGATGCAAGTATTCATAATATTCTGCTGGGTCAACTTTTTGTGGTTAGAAACTTGGGGGCTGTATAAGATATTCAGAATCAGGACCCTTGGGGCTTCTCTTGAACCATCATTAAGCTCATAAAGTCAAGAAAAAAGTGGATTGTTTGCTTGTTTAGTGAAAAGATAAAGCTAATTGCATTAATGATGATGCTTTCGTGCAACTCTATGTAGTTATTGTTTGTTTAGTTTAAAAGGATTCTTCTTTAAGAAAACAAACACCATAGAGTTTATTTTAGGCCCCATTTGATGATCAAAGGATTCACTATGGTTTTCACTTTCCTTAACGAAGAAACAATAGAATTCTTACCCAAATTTAAAAAACGAAAGCAAGTTTTTTCAGAATCTTTTAGTTTACGAATAAAGAAAGAAACATTTAGGTGGAAGTAATGTGTGAGATCCCACGTCGGTTGGTTGGGGAGGAAACGAAACATTTTTTATAAGGGTGTGGAAACCTCTCCCTAGCAGATGCGTTTTAGAAACCTTGAGGGAAAGCTTGAAAGGGAAAGCCTAAAGAGGACAATATTTGCTAGCGGTGGGCTTGGACAATTGTAAATGGTATCAGAGCCAAACACCGGATAATGTGTCAACGAGGAGGTTGATCTCCGAAGGGGGGTGAACACGAGGCGGTGTGCCAACAGGACGCTGGACCCCAAAGGGGGTGGGTTGGGGGTCCCACATCGATTGAAGAAGGGAATGAGTGCTAGTGAGGACGCTGGGCCCCGAAGGGGAGTGGGTTGTGAGATCCCACATTGGTTGGGGAGGAAACGAAACATTCTTTACAAAGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGAGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATTTACTAGTGGTGGGCTTGGGCAGTTACAAATGGTATTAGAGCTAGACATCGAGCGATGTGTTAGTGAGGAGGCTGATCCCCAAAGGGGGTGGACACAAGGCAGTGTGCCAGCAAGGACGCTGGGCCCCGAAAGAGGGGTGGATTAGGGAGTCCCACATCGATTGGAGAAGGGAACGAGTATCAGCGAGGACGCTGGGCCCTGAAAAGGGGGAGTGGGTTGTGAGATCCCACATCGATTGGGGGAGAAACGAAACATTCTTTATAAGGGTGTATAAGGGTATAGAAATCTCTCTCTAGCAGACACGTGTTTTAAAAAACTTTAGGGGAAGTCCAAAAGGGAAAGTTCAAATAAGACAATATATGCTAGCGGTAAGTTTGGGCCTTACATAATGCTTGTAGGCTTAATTTTCAAAAACCAAATTGTTACCGAACATTATTGCTAGAGAAGATTGTGATGAACAAGAGATGAACTTGCCTGTAGAATTGTGTGAATGTAAAAGTAAAACTTCAGCCTTCTTCCACATTGCTCTCTGTTGGACATTCTGATAACAAGAATCCCAACAGGCATAAGGAACCCCATTGAAGCCCATAGGAGAAATCCATGGAGTGTGATATCAAATAGTAAGCTGGCACTAATCTGCTGCCATTATTAACCAATAATCACTTTCAGCTATACATTCTAAACCTTCTTTTTCTGCAATGATATTCATTTCAAATATGAAAATGAAACAATAGGAAGAACAATAAGAAACCTTCTGGCAGTGATCTTTCTTGCTTGTATTGAATTCCACATTTTTCTTGAGCTGTTGCGATGAACTGAGTGGTTGAAATGTGAGAAGAAGAAGGAGAAAAAGAATGGAGAAAGAGAACTTTTTGTTCTGTAAAAATAGCATTCTTTATTTGCTTCTGATGAAACAGGCACCAAGAACAATGCAGAAGCCAAGCCACTCTTGGAAGCTGCTTATTTGGCTGCTATGGATTTCACAAGTGATCTTCAAAGCTTTTGTAGCAATGAGGTAAAAGGAAAAAGCTGGACAATGTCAGAGGAGAGGAGCAATAAAGGGTTGTGATCAATTATGCCTTAAGAGGACGCTCAACTAAGGTACTTGATTTTTCTCTAGAAATACATCTGCCTTGTGTTGGATGTTGATCTAAAAATATGTCGGTTACTTTTACCATTTCTGTCTCACATATCATCTGTCTGTGCAAAATTATCGAGATTACTGGTGTGCTGAGTAGATATTGTACTCTTTGTGCTTTCTCTTTCGAGCTTTCCCTCAAGGTTTTTGAAATGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATAAAGAATGTTTCGTTCTTCTCCCCAACTGATGTGGGATCTCACAATCCTCCCTCCTTCGAGGCCCAACCTCTTCATTAGCATATCGCCTGGTGTCTGGCTCTGATACCATTTGTAACGGCCCAAACTCACTGCCAATAGATATTGTCCTCTTTGGACTATCTCTTTCGGGTTTTCCTTCAAGGTTTTTAAAACATATATGCAAGGGAGAGGTTTCTACACCCTTATAAAGAATATTTCATTCTTATCTCCAACCGATGGGATCTCACAATCCACTCATTTTCGGGGCCCAG

mRNA sequence

AAATCAATTGTAGCCGCAAATTTATGGGGAAATTGTTCAAGCTCCGCTTCCAGTCCCAGTAATGGAGACCAGAAGCCATAGATTTTTCACTTGAAAACAACAAAATCATGGCCTCCAATTTCATTACTGCGTTTCATTGCCCGAATCCACACTCTTCTTCTTCTTCTTATTCAAATCTGCAGCAGAATACAGTGCTCCTTTTGAAGTTCCATTCTCGTTGTTCATCTTCTTCGAGAAAATTCGCTGTTTCGGAGGGCGCTGAGGGTAGAGTTCAAGATGAAGAGCTTTTCATTTCGTCTTCTTCTGGAGCATCTTCTTCTGCACGCACACAGCTTGATCTCTTGGAGCAACTCTCTTCCGGTAGCCAATTAGTTGATGGTTATGAGAGTGATGGCAATTACCAGAAAACTACGATCCGTGATCAGCTTGCACAATTGTTCAGAGACAGAGACGACGATTTTAGCATTCCATTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAACATCAAAAGACAAGAATACTTGAATGAAGTATCTCAAAGGAATGATTCAGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTCTGCCACCTATTGTAATATTAGGCACCAAGAACAATGCAGAAGCCAAGCCACTCTTGGAAGCTGCTTATTTGGCTGCTATGGATTTCACAAGTGATCTTCAAAGCTTTTGTAGCAATGAGGTAAAAGGAAAAAGCTGGACAATGTCAGAGGAGAGGAGCAATAAAGGGTTGTGATCAATTATGCCTTAAGAGGACGCTCAACTAAGGTACTTGATTTTTCTCTAGAAATACATCTGCCTTGTGTTGGATGTTGATCTAAAAATATGTCGGTTACTTTTACCATTTCTGTCTCACATATCATCTGTCTGTGCAAAATTATCGAGATTACTGGTGTGCTGAGTAGATATTGTACTCTTTGTGCTTTCTCTTTCGAGCTTTCCCTCAAGGTTTTTGAAATGTGTCTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATAAAGAATGTTTCGTTCTTCTCCCCAACTGATGTGGGATCTCACAATCCTCCCTCCTTCGAGGCCCAACCTCTTCATTAGCATATCGCCTGGTGTCTGGCTCTGATACCATTTGTAACGGCCCAAACTCACTGCCAATAGATATTGTCCTCTTTGGACTATCTCTTTCGGGTTTTCCTTCAAGGTTTTTAAAACATATATGCAAGGGAGAGGTTTCTACACCCTTATAAAGAATATTTCATTCTTATCTCCAACCGATGGGATCTCACAATCCACTCATTTTCGGGGCCCAG

Coding sequence (CDS)

ATGGCCTCCAATTTCATTACTGCGTTTCATTGCCCGAATCCACACTCTTCTTCTTCTTCTTATTCAAATCTGCAGCAGAATACAGTGCTCCTTTTGAAGTTCCATTCTCGTTGTTCATCTTCTTCGAGAAAATTCGCTGTTTCGGAGGGCGCTGAGGGTAGAGTTCAAGATGAAGAGCTTTTCATTTCGTCTTCTTCTGGAGCATCTTCTTCTGCACGCACACAGCTTGATCTCTTGGAGCAACTCTCTTCCGGTAGCCAATTAGTTGATGGTTATGAGAGTGATGGCAATTACCAGAAAACTACGATCCGTGATCAGCTTGCACAATTGTTCAGAGACAGAGACGACGATTTTAGCATTCCATTGGGTAAGAACTTGAAGAAGGTTAGTGCCAAGTTTTTGACAATTTCTCAGAAGAGGAACATCAAAAGACAAGAATACTTGAATGAAGTATCTCAAAGGAATGATTCAGTTTTCTTTGCTACAGTTGGAGCATTTGTAATTCTGCCACCTATTGTAATATTAGGCACCAAGAACAATGCAGAAGCCAAGCCACTCTTGGAAGCTGCTTATTTGGCTGCTATGGATTTCACAAGTGATCTTCAAAGCTTTTGTAGCAATGAGGTAAAAGGAAAAAGCTGGACAATGTCAGAGGAGAGGAGCAATAAAGGGTTGTGA

Protein sequence

MASNFITAFHCPNPHSSSSSYSNLQQNTVLLLKFHSRCSSSSRKFAVSEGAEGRVQDEELFISSSSGASSSARTQLDLLEQLSSGSQLVDGYESDGNYQKTTIRDQLAQLFRDRDDDFSIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILGTKNNAEAKPLLEAAYLAAMDFTSDLQSFCSNEVKGKSWTMSEERSNKGL
Homology
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BLAST of CmaCh01G013090.1 vs. TrEMBL
Match: A0A0A0L2V6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608080 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.7e-74
Identity = 155/178 (87.08%), Postives = 160/178 (89.89%), Query Frame = 1 

Query: 1   MASNFITAFHCPNPH--SSSSSYSNLQQNTVLLLKFHSRCSSSSRKFAVSEGAEGRVQDE 60
           MASNFI  FHC NPH  SSSSS SNL  N  L  KFHSRCSSSSRKFAVSE AEGRV +E
Sbjct: 1   MASNFIIGFHCSNPHFSSSSSSSSNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60

Query: 61  ELFISSSSGASSSARTQLDLLEQLSSGSQLVDGYESDGNYQKTTIRDQLAQLFRDRDDDF 120
           E  ISSSSG+SSSARTQLDLLEQLSSGSQLVDGYESDG+Y KTTIRDQLAQLFRDRDDDF
Sbjct: 61  EFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120

Query: 121 SIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILG 177
           ++PLGKNLKKVSAKFLTISQKRNIKRQ YLNEVSQRNDSVFFATVGAFVILPPIVILG
Sbjct: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILG 178

[Close]
BLAST of CmaCh01G013090.1 vs. TrEMBL
Match: W9SD73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026761 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.4e-43
Identity = 113/180 (62.78%), Postives = 130/180 (72.22%), Query Frame = 1 

Query: 1   MASNFITAFHCPNPHSSSSS---YSNLQQNTVLLLKFHSRCSSSSRKFAVSEGAEGRVQD 60
           MA NF     CPN +SSSSS   +   +   +      S  SSS +  A SEG E  V++
Sbjct: 1   MALNFRATSLCPNSYSSSSSPPPFVIPKHKQLFKSSSPSSSSSSFKTLAQSEGTERVVKE 60

Query: 61  EELFISSSSGASSSARTQLDLLEQLSS-GSQLVDGYESDGNYQKTTIRDQLAQLFRDRDD 120
           ++    +S   SSSAR QLDLLEQLSS  S   DGYES+G+ +K TIRDQLAQL  DRD 
Sbjct: 61  QDP--PASFSGSSSARAQLDLLEQLSSTSSSSADGYESEGSSRKLTIRDQLAQLVADRDG 120

Query: 121 DFSIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILG 177
           DFS+PLGKNLKKVSAKFLTISQKRNI+RQ YLN+VSQRNDSVFFATVGAFVILPP+VILG
Sbjct: 121 DFSLPLGKNLKKVSAKFLTISQKRNIRRQAYLNQVSQRNDSVFFATVGAFVILPPLVILG 178

[Close]
BLAST of CmaCh01G013090.1 vs. TrEMBL
Match: V4SRD9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032884mg PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.0e-42
Identity = 103/150 (68.67%), Postives = 123/150 (82.00%), Query Frame = 1 

Query: 31  LLKFHSRCSSSSRKFAVSE--GAEGR--VQDEELFISSSSGASSSARTQLDLLEQLSSGS 90
           L K  S+ ++S + FA S+  GAEG   V +E+   +S SG+SSSA+TQLDLLEQL+S S
Sbjct: 19  LFKLQSQ-TTSCKTFAQSQRIGAEGGGGVTEEDPPAASLSGSSSSAQTQLDLLEQLTSTS 78

Query: 91  QLVDGYESDGNYQKTTIRDQLAQLFRDRDDDFSIPLGKNLKKVSAKFLTISQKRNIKRQE 150
             ++GYESDG+ +K TIRDQLAQL  DRDD+FSIPLGKNLKKVS KFLTISQKRNI+RQ 
Sbjct: 79  SSLEGYESDGSSRKLTIRDQLAQLIGDRDDEFSIPLGKNLKKVSEKFLTISQKRNIRRQA 138

Query: 151 YLNEVSQRNDSVFFATVGAFVILPPIVILG 177
           YLN+VSQRNDSVFFAT+GAFVILPP +ILG
Sbjct: 139 YLNKVSQRNDSVFFATIGAFVILPPFIILG 167

[Close]
BLAST of CmaCh01G013090.1 vs. TrEMBL
Match: A0A0D2PRL2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G092300 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 6.0e-42
Identity = 99/144 (68.75%), Postives = 114/144 (79.17%), Query Frame = 1 

Query: 33  KFHSRCSSSSRKFAVSEGAEGRVQDEELFISSSSGASSSARTQLDLLEQLSSGSQLVDGY 92
           K  S  SS  + FA SEG EG V++E+    + SG+ SS RTQLDLL+QLSS S   DGY
Sbjct: 36  KLISSSSSCGKAFAQSEGKEGGVKEEDP--PAFSGSLSSTRTQLDLLDQLSSTSSTADGY 95

Query: 93  ESDGNYQKTTIRDQLAQLFRDRDDDFSIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVS 152
           ESDG   K TIR+QL +L  DRDDDF+IPLGKNLKKVS KFLTISQKRNI+RQ YLNEVS
Sbjct: 96  ESDGRSGKLTIREQLVRLVGDRDDDFTIPLGKNLKKVSPKFLTISQKRNIRRQAYLNEVS 155

Query: 153 QRNDSVFFATVGAFVILPPIVILG 177
           QRNDSVFFAT+GAFV++PP+VILG
Sbjct: 156 QRNDSVFFATIGAFVLVPPLVILG 177

[Close]
BLAST of CmaCh01G013090.1 vs. TrEMBL
Match: A0A0V0GQ07_SOLCH (Putative vitellogenin-1-like (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 7.8e-42
Identity = 101/142 (71.13%), Postives = 112/142 (78.87%), Query Frame = 1 

Query: 35  HSRCSSSSRKFAVSEGAEGRVQDEELFISSSSGASSSARTQLDLLEQLSSGSQLVDGYES 94
           H    SS R+ A+SE  +GRV  EE  + + SG+ SSARTQLDLLEQL+S S  V+GYES
Sbjct: 18  HKLYYSSIRRAALSEQGDGRVTKEE-DLPTYSGSLSSARTQLDLLEQLTSSSSAVNGYES 77

Query: 95  DGNYQKTTIRDQLAQLFRDRDDDFSIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQR 154
           D +  K TIRDQLA L   RDDDFSIPLGKNLKK SAKFLT SQKRNIKRQ YLNEVSQR
Sbjct: 78  DSSSGKPTIRDQLANLVGSRDDDFSIPLGKNLKKFSAKFLTTSQKRNIKRQAYLNEVSQR 137

Query: 155 NDSVFFATVGAFVILPPIVILG 177
           NDS FFAT+GAFVILPP+VILG
Sbjct: 138 NDSTFFATIGAFVILPPLVILG 158

[Close]
BLAST of CmaCh01G013090.1 vs. TAIR10
Match: AT2G42975.1 (AT2G42975.1 unknown protein)

HSP 1 Score: 162.5 bits (410), Expect = 2.9e-40
Identity = 110/181 (60.77%), Postives = 123/181 (67.96%), Query Frame = 1 

Query: 1   MASNFI-TAFHCPNPHSSSSSYSNLQQNTVLLLKFHS----RCSSSSRKFAVSEGAEGRV 60
           MA NF  T+ H   P S+ SS S  +Q+  LLL+  S    R  S   +  V++      
Sbjct: 1   MALNFFSTSLH---PISNPSSSSRSKQSHHLLLQLSSPPATRVRSERSEIGVTDDNNNN- 60

Query: 61  QDEELFISSSSGASSSARTQLDLLEQLSSGSQLVDGYESDGNYQK-TTIRDQLAQLFRDR 120
            D      S S +SSS RTQLDLLEQL+S S   DGY SDG   +  TIRDQLA L  DR
Sbjct: 61  NDTSSSSFSGSSSSSSVRTQLDLLEQLTSTS---DGYLSDGGGSRGLTIRDQLAGLVGDR 120

Query: 121 DDDFSIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVI 176
           DDDFSIPLGKNLKKVS KFLTISQKRNIKRQ YLNEVSQRNDSVFFAT+GAFVILPP+VI
Sbjct: 121 DDDFSIPLGKNLKKVSPKFLTISQKRNIKRQSYLNEVSQRNDSVFFATIGAFVILPPLVI 174

[Close]
BLAST of CmaCh01G013090.1 vs. NCBI nr
Match: gi|778695333|ref|XP_004144634.2| (PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 3.8e-74
Identity = 155/178 (87.08%), Postives = 160/178 (89.89%), Query Frame = 1 

Query: 1   MASNFITAFHCPNPH--SSSSSYSNLQQNTVLLLKFHSRCSSSSRKFAVSEGAEGRVQDE 60
           MASNFI  FHC NPH  SSSSS SNL  N  L  KFHSRCSSSSRKFAVSE AEGRV +E
Sbjct: 1   MASNFIIGFHCSNPHFSSSSSSSSNLLHNKSLPFKFHSRCSSSSRKFAVSESAEGRVNEE 60

Query: 61  ELFISSSSGASSSARTQLDLLEQLSSGSQLVDGYESDGNYQKTTIRDQLAQLFRDRDDDF 120
           E  ISSSSG+SSSARTQLDLLEQLSSGSQLVDGYESDG+Y KTTIRDQLAQLFRDRDDDF
Sbjct: 61  EFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120

Query: 121 SIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILG 177
           ++PLGKNLKKVSAKFLTISQKRNIKRQ YLNEVSQRNDSVFFATVGAFVILPPIVILG
Sbjct: 121 TVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILG 178

[Close]
BLAST of CmaCh01G013090.1 vs. NCBI nr
Match: gi|659130963|ref|XP_008465443.1| (PREDICTED: vitellogenin-1 [Cucumis melo])

HSP 1 Score: 283.1 bits (723), Expect = 4.2e-73
Identity = 155/178 (87.08%), Postives = 160/178 (89.89%), Query Frame = 1 

Query: 1   MASNFITAFHCPNP--HSSSSSYSNLQQNTVLLLKFHSRCSSSSRKFAVSEGAEGRVQDE 60
           MASNFI  FHC NP   SSSSS SNL  +  L LKFHSRCSSSSRKFAVSE AEGRV +E
Sbjct: 1   MASNFIIGFHCSNPPFSSSSSSSSNLLLSKSLPLKFHSRCSSSSRKFAVSESAEGRVNEE 60

Query: 61  ELFISSSSGASSSARTQLDLLEQLSSGSQLVDGYESDGNYQKTTIRDQLAQLFRDRDDDF 120
           E  ISSSSG+SSSARTQLDLLEQLSSGSQLVDGYESDG+Y KTTIRDQLAQLFRDRDDDF
Sbjct: 61  EFLISSSSGSSSSARTQLDLLEQLSSGSQLVDGYESDGSYGKTTIRDQLAQLFRDRDDDF 120

Query: 121 SIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILG 177
           S+PLGKNLKKVSAKFLTISQKRNIKRQ YLNEVSQRNDSVFFATVGAFVILPPIVILG
Sbjct: 121 SVPLGKNLKKVSAKFLTISQKRNIKRQAYLNEVSQRNDSVFFATVGAFVILPPIVILG 178

[Close]
BLAST of CmaCh01G013090.1 vs. NCBI nr
Match: gi|697111979|ref|XP_009609863.1| (PREDICTED: uncharacterized protein LOC104103652, partial [Nicotiana tomentosiformis])

HSP 1 Score: 186.0 bits (471), Expect = 7.0e-44
Identity = 103/146 (70.55%), Postives = 119/146 (81.51%), Query Frame = 1 

Query: 31  LLKFHSRCSSSSRKFAVSEGAEGRVQDEELFISSSSGASSSARTQLDLLEQLSSGSQLVD 90
           L  + +  +SS R+ A+SE  +GR  +EEL   + SG+ SSARTQLDLLEQL+S S  V+
Sbjct: 30  LFSYQAWSASSLRRAALSEEGDGRFTEEEL--PTYSGSLSSARTQLDLLEQLTSSSSAVN 89

Query: 91  GYESDGNYQKTTIRDQLAQLFRDRDDDFSIPLGKNLKKVSAKFLTISQKRNIKRQEYLNE 150
           GYESD +  K TIR QLA+L  DRDDDFSIPLGKNLKKVSAKFLT+SQKRNIKRQ YLNE
Sbjct: 90  GYESDSSSSKPTIRAQLAKLVGDRDDDFSIPLGKNLKKVSAKFLTVSQKRNIKRQAYLNE 149

Query: 151 VSQRNDSVFFATVGAFVILPPIVILG 177
           VSQRNDSVFFAT+GAFVILPP+VILG
Sbjct: 150 VSQRNDSVFFATIGAFVILPPLVILG 173

[Close]
BLAST of CmaCh01G013090.1 vs. NCBI nr
Match: gi|698486942|ref|XP_009790166.1| (PREDICTED: uncharacterized protein LOC104237674 [Nicotiana sylvestris])

HSP 1 Score: 184.5 bits (467), Expect = 2.0e-43
Identity = 102/138 (73.91%), Postives = 116/138 (84.06%), Query Frame = 1 

Query: 39  SSSSRKFAVSEGAEGRVQDEELFISSSSGASSSARTQLDLLEQLSSGSQLVDGYESDGNY 98
           SSS R+ A+SE  +G V +EEL   + SG+ SSARTQLDLL+QL+S S  V+GYESD + 
Sbjct: 38  SSSLRRAALSEERDGNVTEEEL--PTYSGSLSSARTQLDLLDQLTSSSSAVNGYESDSSS 97

Query: 99  QKTTIRDQLAQLFRDRDDDFSIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSV 158
            K TIR QLA+L  DRDDDFSIPLGKNLKKVSAKFLT+SQKRNIKRQ YLNEVSQRNDSV
Sbjct: 98  SKPTIRAQLAKLVGDRDDDFSIPLGKNLKKVSAKFLTVSQKRNIKRQAYLNEVSQRNDSV 157

Query: 159 FFATVGAFVILPPIVILG 177
           FFAT+GAFVILPP+VILG
Sbjct: 158 FFATIGAFVILPPLVILG 173

[Close]
BLAST of CmaCh01G013090.1 vs. NCBI nr
Match: gi|703163742|ref|XP_010113427.1| (hypothetical protein L484_026761 [Morus notabilis])

HSP 1 Score: 183.7 bits (465), Expect = 3.5e-43
Identity = 113/180 (62.78%), Postives = 130/180 (72.22%), Query Frame = 1 

Query: 1   MASNFITAFHCPNPHSSSSS---YSNLQQNTVLLLKFHSRCSSSSRKFAVSEGAEGRVQD 60
           MA NF     CPN +SSSSS   +   +   +      S  SSS +  A SEG E  V++
Sbjct: 1   MALNFRATSLCPNSYSSSSSPPPFVIPKHKQLFKSSSPSSSSSSFKTLAQSEGTERVVKE 60

Query: 61  EELFISSSSGASSSARTQLDLLEQLSS-GSQLVDGYESDGNYQKTTIRDQLAQLFRDRDD 120
           ++    +S   SSSAR QLDLLEQLSS  S   DGYES+G+ +K TIRDQLAQL  DRD 
Sbjct: 61  QDP--PASFSGSSSARAQLDLLEQLSSTSSSSADGYESEGSSRKLTIRDQLAQLVADRDG 120

Query: 121 DFSIPLGKNLKKVSAKFLTISQKRNIKRQEYLNEVSQRNDSVFFATVGAFVILPPIVILG 177
           DFS+PLGKNLKKVSAKFLTISQKRNI+RQ YLN+VSQRNDSVFFATVGAFVILPP+VILG
Sbjct: 121 DFSLPLGKNLKKVSAKFLTISQKRNIRRQAYLNQVSQRNDSVFFATVGAFVILPPLVILG 178

The following BLAST results are available for this feature:
BLAST of CmaCh01G013090.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh01G013090.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L2V6_CUCSA2.7e-7487.08Uncharacterized protein OS=Cucumis sativus GN=Csa_4G608080 PE=4 SV=1[more]
W9SD73_9ROSA2.4e-4362.78Uncharacterized protein OS=Morus notabilis GN=L484_026761 PE=4 SV=1[more]
V4SRD9_9ROSI6.0e-4268.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032884mg PE=4 SV=1[more]
A0A0D2PRL2_GOSRA6.0e-4268.75Uncharacterized protein OS=Gossypium raimondii GN=B456_001G092300 PE=4 SV=1[more]
A0A0V0GQ07_SOLCH7.8e-4271.13Putative vitellogenin-1-like (Fragment) OS=Solanum chacoense PE=4 SV=1[more]
BLAST of CmaCh01G013090.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G42975.12.9e-4060.77 unknown protein[more]
BLAST of CmaCh01G013090.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778695333|ref|XP_004144634.2|3.8e-7487.08PREDICTED: uncharacterized protein LOC101216249 [Cucumis sativus][more]
gi|659130963|ref|XP_008465443.1|4.2e-7387.08PREDICTED: vitellogenin-1 [Cucumis melo][more]
gi|697111979|ref|XP_009609863.1|7.0e-4470.55PREDICTED: uncharacterized protein LOC104103652, partial [Nicotiana tomentosifor... [more]
gi|698486942|ref|XP_009790166.1|2.0e-4373.91PREDICTED: uncharacterized protein LOC104237674 [Nicotiana sylvestris][more]
gi|703163742|ref|XP_010113427.1|3.5e-4362.78hypothetical protein L484_026761 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh01G013090CmaCh01G013090gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh01G013090.1CmaCh01G013090.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G013090.1.exon.1CmaCh01G013090.1.exon.1exon
CmaCh01G013090.1.exon.2CmaCh01G013090.1.exon.2exon
CmaCh01G013090.1.exon.3CmaCh01G013090.1.exon.3exon
CmaCh01G013090.1.exon.4CmaCh01G013090.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G013090.1.five_prime_UTR.1CmaCh01G013090.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G013090.1.CDS.1CmaCh01G013090.1.CDS.1CDS
CmaCh01G013090.1.CDS.2CmaCh01G013090.1.CDS.2CDS
CmaCh01G013090.1.CDS.3CmaCh01G013090.1.CDS.3CDS
CmaCh01G013090.1.CDS.4CmaCh01G013090.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh01G013090.1.three_prime_UTR.1CmaCh01G013090.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36742FAMILY NOT NAMEDcoord: 1..176
score: 1.7
NoneNo IPR availablePANTHERPTHR36742:SF1SUBFAMILY NOT NAMEDcoord: 1..176
score: 1.7