CmaCh01G010650.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G010650.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-binding family protein
Location	Cma_Chr01 : 7883658 .. 7886841 (-)
Sequence length	2058

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCATTACCCTCTTTCAGTTCGGAATTCCACTGAAAACCTAAATCAACGATCTTTCATCTTCTTCTCCACGTCTCATCGATCTTCTTCGACAACGCATCCGCCAGCCAAATTCCTCATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCCGGGTTTGTTTCTTTTCCTTTCTCAATTTTTATTTTCTTTCGGTGCTTCTCTGAAAAAGTTTGATGAGTTGGGGAAAAGGGCTTTCTTAAGTGCCAGATTCCATTATTATATGTCATCCCCCTCTCGGGCCTGTCAAACAGTTCCTTTGTCTTGATTTTCTTTAGATCTCGATTTTGTGTTCTCACTTTTTTGCTATTTTTGTTTTCCCAGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACAGTGAGTTTTTGTTTTCTTTTAATCATGTATTAGGGACGAGTTTCTGTACCCATGTTTAATTCTGCTGAAATTACCTGTTATTCTTGATGGGTGTTCATATTTTGAATGGCTAGCTTAGCACCTCTTCTATTGCGGTTCATTGATAATTAAATAAATTCTTGATTTGCTAATTCTGTATATTGATTAAGTGCAATTTAGCTTAGATTCGGCTACAGCTGATGGTCTTTTTCATTGTGTTCTTGGAAAAATTAGCTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACACGTCATCAATGGAAAACAGGTACGTCATCTTAATTATTTTGTTTTTCTTCTTCCTGCTAACTGGCTTACACCACATTATATTCTGCTGGATTGTTGAATGGCGTAAAATGTTTTTGTTTCCCGTGGTCTTATGAGGTTAATTATTAGTCTTTTTCTGTATTTTATTGGATGGTTTATAATCATACAGTTGTAATATGTTTGTTGTTGCATGAATTTATGCTTTATTTATTTTATTTCTGGGATTTACTTTGCTAAATGGAGATAGGTTGAAATCAAGAGAACCATCCCGAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGGTAAGGTTATTGAGTTATATGTTGAAGCGTGTTCTTTATTGGCAGGACCAGTGTTTGTTTCAGCCACTTTTTATCTGTTCTTCTCATATTGATGTAGTTTCTATGTTGTGTTTTAATATGTTTATTACGTATCTTGCTTGTAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGTTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGAGCTTATATAAATGGACCGCAAGTGAGCAAAGTGTAAACCAAATTGTGTTTCCCATGGGTTTTGCACCATCGTATTTTCCAGTTTTAATAATAATGGACAATTTTCAACCCTTTCACTTTATACAATCGTATCTTTTAAGTATTATGCGATTAGCTACTTCTTTTTGCTACTAATTTTAGGTTGAGGTTATACAGGTATAGATCTTCTAAGGCAAGGGCTATCAGAATAGTTAAATTGCAGAAGATCTAGGTTAACTAAGTTACTTTGTTGTAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATTGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTTGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGTAGAATCGTTGCGTAGTCAGTACCATCCATCTCCTTGGAAGCTAGAACAGAAGTCTCACTCGAATGCTGTCTCGCCTAAGAATTGCCATAGAGTTTTTCAAACACACAGGTTCCTTTAGTTTTGTGGCCCAGTGATAGGCAGTGTTCTCTCACAAACACTAGAGGTCCAAGGATGCTTTGGAAAAAGACGAGAAGAGTGTATTAGACTTTTTATTGTATGGTTTTAGACACTATTATGTAGACTACACTGCTGCAAGCTAGTTTATGCCTAATATGGTTGTCCCCATCTAGTACAATTTCAATGTAGTGTGCTGTGCTCTGCTGTAGGCTTTAGCATACACTTATTTCTTGGTTATGTTTATTTGTCACGTTAGTTCGATAAACTAGATAGAGATATTAGATGTATGTTATTTCCTAACACGCCCTAGTAGTCTTATACTCTTTATTTTAGTTTACAGAACCTGATAGACACAGGAAGAGTAAAATATAATCCTCCCAGTTCTTACTGATAGTTTTAGGGGAGCGAGCGGGAAATGTAGGACGACGAACATCACGTTTATCGATATGTTGATTAGATAGATAGAGGATTGTTGTTTTGATATTGAGATTAATTTATTATGTTCTTGGCCTTTTGAGTGCTATGCTGAAGCTGTACTGGTGGTTGCCATGGAAGCTATTTCTGTAACTTTTTAGCTTACTTTAGGGTCTCCAATTATTTATCCAGAAATTGGGGGTTTTTTTTTTTCCTTCTAATGATTTCAGGGTAAATAATAGAGAAGCCAGGTTACATGCACAATTGAAGTCTCTGTAATTTCTTCATTAATTTTTTATTTTATAATGAAGTTTATTTGTTAATTAAGTTCATTAGCTATCAAATTGATTGTTGTGTTTGAGTTTTATT

mRNA sequence

TTCATTACCCTCTTTCAGTTCGGAATTCCACTGAAAACCTAAATCAACGATCTTTCATCTTCTTCTCCACGTCTCATCGATCTTCTTCGACAACGCATCCGCCAGCCAAATTCCTCATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCCGGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACACTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACACGTCATCAATGGAAAACAGGTTGAAATCAAGAGAACCATCCCGAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGTTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATTGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTTGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGTAGAATCGTTGCGTAGTCAGTACCATCCATCTCCTTGGAAGCTAGAACAGAAGTCTCACTCGAATGCTGTCTCGCCTAAGAATTGCCATAGAGTTTTTCAAACACACAGGTTCCTTTAGTTTTGTGGCCCAGTGATAGGCAGTGTTCTCTCACAAACACTAGAGGTCCAAGGATGCTTTGGAAAAAGACGAGAAGAGTGTATTAGACTTTTTATTGTATGGTTTTAGACACTATTATGTAGACTACACTGCTGCAAGCTAGTTTATGCCTAATATGGTTGTCCCCATCTAGTACAATTTCAATGTAGTGTGCTGTGCTCTGCTGTAGGCTTTAGCATACACTTATTTCTTGGTTATGTTTATTTGTCACGTTAGTTCGATAAACTAGATAGAGATATTAGATGTATGTTATTTCCTAACACGCCCTAGTAGTCTTATACTCTTTATTTTAGTTTACAGAACCTGATAGACACAGGAAGAGTAAAATATAATCCTCCCAGTTCTTACTGATAGTTTTAGGGGAGCGAGCGGGAAATGTAGGACGACGAACATCACGTTTATCGATATGTTGATTAGATAGATAGAGGATTGTTGTTTTGATATTGAGATTAATTTATTATGTTCTTGGCCTTTTGAGTGCTATGCTGAAGCTGTACTGGTGGTTGCCATGGAAGCTATTTCTGTAACTTTTTAGCTTACTTTAGGGTCTCCAATTATTTATCCAGAAATTGGGGGTTTTTTTTTTTCCTTCTAATGATTTCAGGGTAAATAATAGAGAAGCCAGGTTACATGCACAATTGAAGTCTCTGTAATTTCTTCATTAATTTTTTATTTTATAATGAAGTTTATTTGTTAATTAAGTTCATTAGCTATCAAATTGATTGTTGTGTTTGAGTTTTATT

Coding sequence (CDS)

ATGGCGTCCAAATCGAAGAGCGAAAATCCTCACACCGGCGATGGCGCTAGCCCCGGGAAGATTTTCATCGGAGGATTGGCGAAGGATACAACTTACACTCAATTCAACAAGCATTTTGGTGATTATGGAGAGATAACGGACTCGGTGATCATGAAGGATCGGTATACCGGACAACCAAGAGGTTTTGGGTTTATTACTTATGCTGATCCTTCTGTGGTTGACAAGGTTATCGAAGATACACACGTCATCAATGGAAAACAGGTTGAAATCAAGAGAACCATCCCGAAAGGACAAGGTCAATCAAAGGATTTTAAGACGAAGAAGATATTTGTTGGTGGGATTCCATCAACGGTTACTGAAGATGAGTTAAAACATTTCTTTTCCAAGTTTGGGAAAGTTGTGGAACACCAAATTATACGTGACCATGAAACCAACCGTTCGCGAGGCTTTGGGTTTATAGTTTTTGACGAGGAAGAAGTTGTAGATGAAATTTTATCCAAAGGAAATATGATAGATATGTCTGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAACCCACCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCATTCAATGATGGCTTTGGTGGATATGGTGGTTCTTATGGGGACTTTGATGCAGGCTTTGGACCTGGTCCCTTTAGGACTGCAGGTGGTCTTGGTGGTAGGATTGGGGGTGGCTATGGTTATGGTAGTGGTGGTGACTTTGGTGGTGGTTATGGAGGTTTTGGAAGCAGTAGCTTAGGTGGCTACCGAGGTGAATCATCCCTTGGTTATTCTAGTCGATTTGGTCCTTACAGTGGTGGGTTTGGTGGGGGTTATGGCACAAGTGGCTTAGGAGGATATGGTCGAGGGGTTGATGGCTATGGGAGCTATGGAGGTTCAGGTTACGGTGGAGGTTATGACTCAGGTCCTGGTGCTAGTTACGGAGGAGCAGGTGGTTTGTATGGAAGGGGAGGCTATAGTGGGAGTAGTCGATACCATCCCTATGCAAGGTAG

Protein sequence

MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRGVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR

Homology

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BLAST of CmaCh01G010650.1 vs. Swiss-Prot
Match: RNP1_ARATH (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-38
Identity = 130/353 (36.83%), Postives = 194/353 (54.96%), Query Frame = 1


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GG++ +T   +  +HF +YGE++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 79  DTHVINGKQVEIKRTI----------------PKGQGQSKDFKTKKIFVGGIPSTVTEDE 138
           + H I+ ++V++KR +                 +  G     KTKKIFVGG+P T+T++E
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125

Query: 139 LKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKK 198
            + +F  +G V +  I+ D  TNR RGFGF+ FD E+ VD +L K    D+SG QVE+K+
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGKQVEVKR 185

Query: 199 AEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLG------ 258
           A PK ++     P  G  S     + G+ GYGG+   +D       F     +G      
Sbjct: 186 ALPKDAN-----PGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSY 245

Query: 259 GRIGGGYGYGSGGDFGGGYGGFG--SSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGL 318
           G  G G GYG+G + G GYG +G  + S GGY   ++ GY +   P   G+G   G +  
Sbjct: 246 GSSGYGAGYGNGSN-GAGYGAYGGYTGSAGGYGAGATAGYGATNIP-GAGYGSSTGVAPR 305

Query: 319 GGY------GRGVDGYGSYGG-SGYGGGYDSGPGASYGGAGGL-YGRGGYSGS 340
             +      G G  GYGS    SGYG    + P  S  G     YG GGYSGS
Sbjct: 306 NSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYGGYSGS 350

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BLAST of CmaCh01G010650.1 vs. Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRP1 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.4e-36
Identity = 88/223 (39.46%), Postives = 132/223 (59.19%), Query Frame = 1


Query: 3   SKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGF 62
           +++K E           K+FIGGL  DTT     ++FG YG +TD  IMKD  TG+ RGF
Sbjct: 143 TQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGF 202

Query: 63  GFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDE 122
           GF+++  PS VD+V++  H+++GK ++ KR IP+ +      KT KIFVGGI   V   E
Sbjct: 203 GFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPRDEQD----KTGKIFVGGIGPDVRPKE 262

Query: 123 LKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKK 182
            + FFS++G +++ Q++ D +T +SRGFGF+ +D  + VD +  +   ID    ++EIK+
Sbjct: 263 FEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV-CQNKFIDFKDRKIEIKR 322

Query: 183 AEPK----KSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFD 222
           AEP+    KSSN       G N+   + N   GG  G+ GDF+
Sbjct: 323 AEPRHMQQKSSN------NGGNNGGNNMNRR-GGNFGNQGDFN 353

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BLAST of CmaCh01G010650.1 vs. Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.6e-34
Identity = 73/191 (38.22%), Postives = 118/191 (61.78%), Query Frame = 1


Query: 3   SKSKSENPHTGDGASP-----GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTG 62
           S +   N    +  SP     GK+FIGGL  +TT      +F  +GE+ D  +M+D  TG
Sbjct: 142 SGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201

Query: 63  QPRGFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPST 122
           + RGFGF+T+ +P  V++V+   H ++GK ++ KR IP+ + +    KT K+FVGG+P  
Sbjct: 202 RSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPREEQE----KTAKMFVGGVPGD 261

Query: 123 VTEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQ 182
            TE+E ++FF++FG+V++  ++ D +T R RGFGF+ ++ E  V+  +S+   I + G  
Sbjct: 262 CTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ-PYITIHGKP 321

Query: 183 VEIKKAEPKKS 189
           VE+K+A PK S
Sbjct: 322 VEVKRATPKAS 327

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BLAST of CmaCh01G010650.1 vs. Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-32
Identity = 69/185 (37.30%), Postives = 117/185 (63.24%), Query Frame = 1


Query: 8   ENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITY 67
           ++PH      P K+FIGGL+  TT     ++FG +GE+ + ++M+D  T + RGFGF+T+
Sbjct: 14  DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 73

Query: 68  ADPSVVDKVI-EDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDELKHF 127
            D + VDKV+ +  H ++ K ++ K   P+        +TKKIFVGG+    T +++KH+
Sbjct: 74  MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 133

Query: 128 FSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKKAEPK 187
           F +FGKV +  ++ D  TNR RGFGF+ F+ E++V+++  + +  +++   VE KKA+PK
Sbjct: 134 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIHFHEINNKMVECKKAQPK 192

Query: 188 KSSNP 192
           +  +P
Sbjct: 194 EVMSP 192

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BLAST of CmaCh01G010650.1 vs. Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.5e-32
Identity = 69/185 (37.30%), Postives = 117/185 (63.24%), Query Frame = 1


Query: 8   ENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITY 67
           ++PH      P K+FIGGL+  TT     ++FG +GE+ + ++M+D  T + RGFGF+T+
Sbjct: 14  DSPH-----DPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTF 73

Query: 68  ADPSVVDKVI-EDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDELKHF 127
            D + VDKV+ +  H ++ K ++ K   P+        +TKKIFVGG+    T +++KH+
Sbjct: 74  MDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHY 133

Query: 128 FSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKKAEPK 187
           F +FGKV +  ++ D  TNR RGFGF+ F+ E++V+++  + +  +++   VE KKA+PK
Sbjct: 134 FEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEIHFHEINNKMVECKKAQPK 192

Query: 188 KSSNP 192
           +  +P
Sbjct: 194 EVMSP 192

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BLAST of CmaCh01G010650.1 vs. TrEMBL
Match: A0A0A0K3W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278740 PE=4 SV=1)

HSP 1 Score: 638.3 bits (1645), Expect = 5.6e-180
Identity = 332/347 (95.68%), Postives = 340/347 (97.98%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE KHFFSK+GK+VEHQIIRDHETNRSRGFGFIVF+EEEVVDEILSKGNMIDMSGTQVEI
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKKSSNP PAPAYGSNSRAR+FNDGFGGYGGSYGDFDAGFGPGPFR  GG+GGRIG
Sbjct: 181 KKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIG 240

Query: 241 GGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300
            GYGYGSGGDFGGGYGGFG +SLGGYRG+SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG
Sbjct: 241 SGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300

Query: 301 VDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           VDGYGSYG SGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 VDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 347

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BLAST of CmaCh01G010650.1 vs. TrEMBL
Match: A5APB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00920 PE=4 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 4.6e-166
Identity = 309/348 (88.79%), Postives = 329/348 (94.54%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SKSKS+NPHTGDGASPGKIFIGGLAKDTTY  FNKHFG YG+ITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVD+VIEDTHVINGKQVEIKRTIPKG GQSKDFKTKKIFVGG+PSTVTE
Sbjct: 61  GFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE K+FFSK+GKVVEHQIIRDHETNRSRGFGFI+FD EEVVDE++SKGNMIDM+GTQVEI
Sbjct: 121 DEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKK+SNPPPAPAYGSNSRARSF+DGFGG+G SYG FD+GFGPGP+RT GG+GGR+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRARSFSDGFGGFGSSYGGFDSGFGPGPYRTPGGVGGRLG 240

Query: 241 GGYGYG-SGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
           G  GYG SG +FGGGYGGFGSSSLGGYRGESSLGYSSRFGPY GGF GGYG SGLGGYGR
Sbjct: 241 GYGGYGSSGSEFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYGGGFSGGYGGSGLGGYGR 300

Query: 301 GVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           G +GYG+YGGSGY GGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 GGEGYGNYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348

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BLAST of CmaCh01G010650.1 vs. TrEMBL
Match: A0A067KWH0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01070 PE=4 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 2.8e-163
Identity = 305/348 (87.64%), Postives = 324/348 (93.10%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SKSKSENPH+GDGASPGKIFIGGLAKDTTY  FNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSENPHSGDGASPGKIFIGGLAKDTTYATFNKHFGKYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVD+VIEDTH+INGKQVEIKRTIPKG GQSKDFKTKKIFVGGIPS+VTE
Sbjct: 61  GFGFITYADPSVVDQVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE K+FFSK+GKVVEHQIIRDHETNRSRGFGFI+FD EEVVDE+LSKGNMIDM+GTQVEI
Sbjct: 121 DEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMLSKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKK+SNPPPAPAYGSNSR+RS+NDGFGG+GGSYG FD GF PGP+R  GGLGGR+ 
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRSRSYNDGFGGFGGSYGGFDGGFAPGPYRNPGGLGGRL- 240

Query: 241 GGYGYG-SGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
           GGYGYG SGGDFGG YG FG SSLGGYRGES+LGYS RFGPY GGFGG YG SGLG YGR
Sbjct: 241 GGYGYGSSGGDFGGSYGSFGGSSLGGYRGESALGYSGRFGPYGGGFGGSYGGSGLGSYGR 300

Query: 301 GVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           G +GYGSYGG+GYGG Y+SGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 GGEGYGSYGGAGYGGSYESGPGASYGGAGGLYGRGGYSGSSRYHPYAR 347

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BLAST of CmaCh01G010650.1 vs. TrEMBL
Match: A0A067EVW0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018875mg PE=4 SV=1)

HSP 1 Score: 582.8 bits (1501), Expect = 2.8e-163
Identity = 302/348 (86.78%), Postives = 321/348 (92.24%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SKSKS+NPHTGDGASPGKIFIGGL KDTTY  FNKHFG YG+ITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLPKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTH+INGKQVEIKRTIPKG GQSKDFKTKKIFVGGIPS+V+E
Sbjct: 61  GFGFITYADPSVVDKVIEDTHIINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVSE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DELK+FFSK+GKV+EHQIIRDHETNRSRGFGF++FD EEVVDE+LSKGNMIDM+GTQVEI
Sbjct: 121 DELKNFFSKYGKVLEHQIIRDHETNRSRGFGFVIFDSEEVVDEMLSKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKKSSNPPP P+Y SNSR RSFNDGFGG+G SYG FD GFGPGP+RT  GLGGR+G
Sbjct: 181 KKAEPKKSSNPPPPPSYASNSRGRSFNDGFGGFGSSYGGFDGGFGPGPYRTPAGLGGRLG 240

Query: 241 GGYGYG-SGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
           GGYGYG SGG++GGGYGGFG SSLGGYRGE SLGYS RFGPY GGFG  YG SGLGGYGR
Sbjct: 241 GGYGYGSSGGEYGGGYGGFGGSSLGGYRGEPSLGYSGRFGPYGGGFGSSYGGSGLGGYGR 300

Query: 301 GVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           G +GYGSYGGSGYGGGYDSGPG SYG  GGLYGRGGYSGSSRYHPYAR
Sbjct: 301 GGEGYGSYGGSGYGGGYDSGPGTSYGAGGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of CmaCh01G010650.1 vs. TrEMBL
Match: B9S9X4_RICCO (Heterogeneous nuclear ribonucleoprotein A1, putative OS=Ricinus communis GN=RCOM_0523280 PE=4 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 5.8e-161
Identity = 301/348 (86.49%), Postives = 320/348 (91.95%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKS+NPH+GDGASPGKIFIGGLAKDTTY  FNKHFG YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSDNPHSGDGASPGKIFIGGLAKDTTYATFNKHFGRYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVI+GKQVEIKRTIPKG GQSKDFKTKKIFVGGIPS+VTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVIHGKQVEIKRTIPKGSGQSKDFKTKKIFVGGIPSSVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE K FFSK+G+VVEHQIIRDHETNRSRGFGFI+FD EE VDE+LS GNMIDM+GTQVEI
Sbjct: 121 DEFKGFFSKYGQVVEHQIIRDHETNRSRGFGFIIFDSEETVDEMLSNGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKK+SNPPPAP+YGSNSR RS+ND +GG+GGSYG FD GFGPGP+RT G LGGR+ 
Sbjct: 181 KKAEPKKASNPPPAPSYGSNSRGRSYNDSYGGFGGSYGGFDGGFGPGPYRTPGSLGGRLS 240

Query: 241 GGYGYGS-GGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
             YGYGS GGDFGG YG FG SSLGGYRGESSLGYS RFGPY GGFGGGYG SGLGGYG 
Sbjct: 241 SAYGYGSGGGDFGGSYGSFGGSSLGGYRGESSLGYSGRFGPYGGGFGGGYGGSGLGGYGS 300

Query: 301 GVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           G +GYGSYGG+GYGGGY+SG GASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 GGEGYGSYGGTGYGGGYESGAGASYGGAGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of CmaCh01G010650.1 vs. TAIR10
Match: AT3G13224.2 (AT3G13224.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 458.4 bits (1178), Expect = 4.0e-129
Identity = 266/360 (73.89%), Postives = 290/360 (80.56%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M S+S+++N  +GDGASPGKIFIGGL KDTT T FNKHFG YGEITDSVIM+DR+TGQPR
Sbjct: 1   MGSRSRNDNFQSGDGASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQG--QSKDFKTKKIFVGGIPSTV 120
           GFGFIT+ADPSVVDKVIEDTHVINGKQVEIKRTIPKG G  QSKD KTKKIFVGGIPSTV
Sbjct: 61  GFGFITFADPSVVDKVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTV 120

Query: 121 TEDELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQV 180
           TEDELK FF+K+G VVEHQ+IRDHETNRSRGFGF++FD EEVVDE+LSKGNMIDM+ TQV
Sbjct: 121 TEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDMADTQV 180

Query: 181 EIKKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFG--PGPFRTAGGLG 240
           EIKKAEPKKS N  P P+YGS+ R RS ND +  YGG YG FD G+G  PGP R+ GG  
Sbjct: 181 EIKKAEPKKSLNRSP-PSYGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPGPIRSHGGPA 240

Query: 241 GRIGGGYGYGSGG---DFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGG-GYGTS 300
            R  GGYGYG G    +FGGGY  +G  SLGGYR E  LGYSSRFGPY  GFGG GYG  
Sbjct: 241 SRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPYGSGFGGEGYGRG 300

Query: 301 GLG---GYGR-GVDGYGSYGGSGYGGGYDS-GPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           G G   GY R G +GYG YGG GYGG Y+S GPG SY GAGG YGR GYS SSRYHPYAR
Sbjct: 301 GEGAYLGYPRGGGEGYGGYGGPGYGGAYESGGPGGSYEGAGGPYGR-GYSSSSRYHPYAR 358

[Close]

BLAST of CmaCh01G010650.1 vs. TAIR10
Match: AT5G40490.1 (AT5G40490.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 314.3 bits (804), Expect = 9.3e-86
Identity = 206/348 (59.20%), Postives = 246/348 (70.69%), Query Frame = 1


Query: 10  PHTGDGA-SPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYA 69
           PH+G G  S GKIF+GGLA++TT  +F KHFG YGEITDSVIMKDR TGQPRGFGF+TYA
Sbjct: 32  PHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA 91

Query: 70  DPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTEDELKHFFS 129
           D SVVDKVI+D H+I GKQVEIKRTIP+G   S DFKTKKIFVGGIPS+V +DE K FF 
Sbjct: 92  DSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFM 151

Query: 130 KFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKKAEPKK- 189
           +FG++ EHQI+RDH T RSRGFGF+ ++ E++VD +L+KGN I++SGTQVEIKKAEPKK 
Sbjct: 152 QFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPKKP 211

Query: 190 SSNPPPAPAYGSNSRARSFNDGFG-GYGGSYGDFDAGFGPGPFRTAGGLGGRIGGGYGYG 249
           +S   P+  +G +SR+ +F  G+G GYGG +G    G G GP+++ GG GG   GGYG G
Sbjct: 212 NSVTTPSKRFG-DSRS-NFGGGYGDGYGGGHGGGYGGPG-GPYKSGGGYGGGRSGGYG-G 271

Query: 250 SGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFG-GGYGTSGLGGYGRGV-DGY 309
            GG+FGG  GG     +G YRGE +LGYS R+G   GG+  GGY   G GGYG G  D Y
Sbjct: 272 YGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGGYSMGGGGGYGGGPGDMY 331

Query: 310 -GSYGGSG---------YGGGYDSGPGASYGGAGGLYGRGGYSGSSRY 343
            GSYG  G         YGGGY S     YGG  G  G GGY G   Y
Sbjct: 332 GGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGY 375

[Close]

BLAST of CmaCh01G010650.1 vs. TAIR10
Match: AT1G17640.1 (AT1G17640.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-50
Identity = 131/305 (42.95%), Postives = 183/305 (60.00%), Query Frame = 1


Query: 16  ASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDK 75
           +SPGK+F+GG++ +TT   F  +FG +GE+ DSVIM DR TG PRGFGF+T+AD +V +K
Sbjct: 63  SSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEK 122

Query: 76  VIEDTHVINGKQVEIKRTIPKGQGQS---KDFKTKKIFVGGIPSTVTEDELKHFFSKFGK 135
           V+E+ HVI+ ++V++KRT+P+G   +      KT+KIFVGG+P  + EDELK++F  +G 
Sbjct: 123 VLEEDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGD 182

Query: 136 VVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKKAEPKKSSNPP 195
           ++EHQI+ DH T RSRGFGF+ F  E+ VD + S G + ++   QVEIK+AEPK++    
Sbjct: 183 IIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDN 242

Query: 196 PAPAYGS----------NSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIGGG 255
              +YG+          + +A      + GYGG YG + A  G      AG  G   G G
Sbjct: 243 SFRSYGASGKYDQEDSYSGKANEDYSMYSGYGG-YGGYGAYAGNSMVNPAGFYGYGGGYG 302

Query: 256 YGYGSGGD-FGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSG-LGGYGRG 306
           YGYG GG  F  GYG  G S +G   G ++         Y GG   G G +G   G G G
Sbjct: 303 YGYGYGGQMFNMGYGAGGYSHMGSGYGVAAA------AAYGGGKSHGNGNNGSSSGKGNG 360

[Close]

BLAST of CmaCh01G010650.1 vs. TAIR10
Match: AT4G14300.1 (AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 159.8 bits (403), Expect = 2.9e-39
Identity = 130/353 (36.83%), Postives = 194/353 (54.96%), Query Frame = 1


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+F+GG++ +T   +  +HF +YGE++ +++M+D+ TG+PRGFGF+ ++DPSV+D+V++
Sbjct: 6   GKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65

Query: 79  DTHVINGKQVEIKRTI----------------PKGQGQSKDFKTKKIFVGGIPSTVTEDE 138
           + H I+ ++V++KR +                 +  G     KTKKIFVGG+P T+T++E
Sbjct: 66  EKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTDEE 125

Query: 139 LKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKK 198
            + +F  +G V +  I+ D  TNR RGFGF+ FD E+ VD +L K    D+SG QVE+K+
Sbjct: 126 FRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK-TFHDLSGKQVEVKR 185

Query: 199 AEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLG------ 258
           A PK ++     P  G  S     + G+ GYGG+   +D       F     +G      
Sbjct: 186 ALPKDAN-----PGGGGRSMGGGGSGGYQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSY 245

Query: 259 GRIGGGYGYGSGGDFGGGYGGFG--SSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGL 318
           G  G G GYG+G + G GYG +G  + S GGY   ++ GY +   P   G+G   G +  
Sbjct: 246 GSSGYGAGYGNGSN-GAGYGAYGGYTGSAGGYGAGATAGYGATNIP-GAGYGSSTGVAPR 305

Query: 319 GGY------GRGVDGYGSYGG-SGYGGGYDSGPGASYGGAGGL-YGRGGYSGS 340
             +      G G  GYGS    SGYG    + P  S  G     YG GGYSGS
Sbjct: 306 NSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSPSGYSNQGYGYGGYSGS 350

[Close]

BLAST of CmaCh01G010650.1 vs. TAIR10
Match: AT2G33410.1 (AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-36
Identity = 139/369 (37.67%), Postives = 194/369 (52.57%), Query Frame = 1


Query: 19  GKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPRGFGFITYADPSVVDKVIE 78
           GK+FIGG++ DT      ++F ++GE+    +M+++ TG+PRGFGF+ ++DP+V+D+V++
Sbjct: 6   GKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65

Query: 79  DTHVINGKQVEIKRTIPKGQ----GQSKDF------------KTKKIFVGGIPSTVTEDE 138
           D H I+ + V++KR + + +    G+S  F            +TKKIFVGG+P  +T DE
Sbjct: 66  DKHHIDNRDVDVKRAMSREEQSPAGRSGTFNASRNFDSGANVRTKKIFVGGLPPALTSDE 125

Query: 139 LKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEIKK 198
            + +F  +G V +  I+ D  T R RGFGF+ FD E+ VD +L K    D++G QVE+K+
Sbjct: 126 FRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK-TFHDLNGKQVEVKR 185

Query: 199 AEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGS--YGDFDAGFGPGPFRTAGGL----G 258
           A P K +NP  A   G  S       G+GG GGS   G  D+     P  T  G     G
Sbjct: 186 ALP-KDANPGIASGGGRGSGGAGGFPGYGGSGGSGYEGRVDSNRYMQPQNTGSGYPPYGG 245

Query: 259 GRIGGGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLG- 318
              G GYGYGS G   GG+GG+G+ +   Y   S  G     GP S    G    SG G 
Sbjct: 246 SGYGTGYGYGSNGVGYGGFGGYGNPAGAPYGNPSVPGAGFGSGPRSS--WGAQAPSGYGN 305

Query: 319 -GYGR-----GVDGYGS-----------YGGSGYG-GGYDS--GPGASYGGAGGL----- 338
            GYG      G  G GS           YG  GYG GG DS  G  ++YG  GG      
Sbjct: 306 VGYGNAAPWGGSGGPGSAVMGQAGASAGYGSQGYGYGGNDSSYGTPSAYGAVGGRSGNMP 365

[Close]

BLAST of CmaCh01G010650.1 vs. NCBI nr
Match: gi|659126124|ref|XP_008463022.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo])

HSP 1 Score: 639.4 bits (1648), Expect = 3.6e-180
Identity = 333/347 (95.97%), Postives = 340/347 (97.98%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE KHFFSK+GK+VEHQIIRDHETNRSRGFGFIVF+EEEVVDEILSKGNMIDMSGTQVEI
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKKSSNP PAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFR  GG+GGRIG
Sbjct: 181 KKAEPKKSSNPLPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIG 240

Query: 241 GGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300
            GYGYGSGGDFGGGYGGFG +SLGGYRG+SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG
Sbjct: 241 SGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300

Query: 301 VDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           VDGYGSYG SGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 VDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmaCh01G010650.1 vs. NCBI nr
Match: gi|449463368|ref|XP_004149406.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus])

HSP 1 Score: 638.3 bits (1645), Expect = 8.0e-180
Identity = 332/347 (95.68%), Postives = 340/347 (97.98%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFG+YGEITDSVIMKDRYTGQPR
Sbjct: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGNYGEITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE KHFFSK+GK+VEHQIIRDHETNRSRGFGFIVF+EEEVVDEILSKGNMIDMSGTQVEI
Sbjct: 121 DEFKHFFSKYGKIVEHQIIRDHETNRSRGFGFIVFEEEEVVDEILSKGNMIDMSGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKKSSNP PAPAYGSNSRAR+FNDGFGGYGGSYGDFDAGFGPGPFR  GG+GGRIG
Sbjct: 181 KKAEPKKSSNPLPAPAYGSNSRARTFNDGFGGYGGSYGDFDAGFGPGPFRNPGGIGGRIG 240

Query: 241 GGYGYGSGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300
            GYGYGSGGDFGGGYGGFG +SLGGYRG+SSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG
Sbjct: 241 SGYGYGSGGDFGGGYGGFGGNSLGGYRGDSSLGYSSRFGPYSGGFGGGYGTSGLGGYGRG 300

Query: 301 VDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           VDGYGSYG SGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 VDGYGSYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 347

[Close]

BLAST of CmaCh01G010650.1 vs. NCBI nr
Match: gi|225461983|ref|XP_002271592.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Vitis vinifera])

HSP 1 Score: 592.0 bits (1525), Expect = 6.6e-166
Identity = 309/348 (88.79%), Postives = 329/348 (94.54%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SKSKS+NPHTGDGASPGKIFIGGLAKDTTY  FNKHFG YG+ITDSVIMKDRYTGQPR
Sbjct: 1   MGSKSKSDNPHTGDGASPGKIFIGGLAKDTTYATFNKHFGKYGDITDSVIMKDRYTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVD+VIEDTHVINGKQVEIKRTIPKG GQSKDFKTKKIFVGG+PSTVTE
Sbjct: 61  GFGFITYADPSVVDRVIEDTHVINGKQVEIKRTIPKGSGQSKDFKTKKIFVGGVPSTVTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE K+FFSK+GKVVEHQIIRDHETNRSRGFGFI+FD EEVVDE++SKGNMIDM+GTQVEI
Sbjct: 121 DEFKNFFSKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDEMISKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKK+SNPPPAPAYGSNSRARSF+DGFGG+G SYG FD+GFGPGP+RT GG+GGR+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRARSFSDGFGGFGSSYGGFDSGFGPGPYRTPGGVGGRLG 240

Query: 241 GGYGYG-SGGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
           G  GYG SG +FGGGYGGFGSSSLGGYRGESSLGYSSRFGPY GGF GGYG SGLGGYGR
Sbjct: 241 GYGGYGSSGSEFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYGGGFSGGYGGSGLGGYGR 300

Query: 301 GVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           G +GYG+YGGSGY GGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 GGEGYGNYGGSGYSGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of CmaCh01G010650.1 vs. NCBI nr
Match: gi|1009111463|ref|XP_015901084.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba])

HSP 1 Score: 588.2 bits (1515), Expect = 9.5e-165
Identity = 306/348 (87.93%), Postives = 324/348 (93.10%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SKSK++NPHTGDGASPGKIFIGGLAKDT Y  FNKHFG YGEI DSVIMKDR+TGQPR
Sbjct: 1   MGSKSKNDNPHTGDGASPGKIFIGGLAKDTNYATFNKHFGKYGEIVDSVIMKDRFTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPS+ TE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSSCTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE K FF+K+GKVVEHQIIRDHETNRSRGFGFI+FD EEVVDE+LSKGNMIDM+GTQVEI
Sbjct: 121 DEFKSFFAKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDELLSKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKK+SNPPPAPAYGSNSRARSFNDGFGG+GGSYG FD G+GPGP+RT  GLG R+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRARSFNDGFGGFGGSYGGFDGGYGPGPYRTPAGLGSRLG 240

Query: 241 GGYGYGS-GGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
           GGYGYGS  G+FGGGYG FGSSSLGGYRGESSLGY+SR+GPY GGFGGGYG S LGGYGR
Sbjct: 241 GGYGYGSASGEFGGGYGSFGSSSLGGYRGESSLGYTSRYGPYGGGFGGGYGASSLGGYGR 300

Query: 301 GVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           G +GYG YG SGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 GGEGYGGYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348

[Close]

BLAST of CmaCh01G010650.1 vs. NCBI nr
Match: gi|1009138621|ref|XP_015886683.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba])

HSP 1 Score: 587.4 bits (1513), Expect = 1.6e-164
Identity = 306/348 (87.93%), Postives = 324/348 (93.10%), Query Frame = 1


Query: 1   MASKSKSENPHTGDGASPGKIFIGGLAKDTTYTQFNKHFGDYGEITDSVIMKDRYTGQPR 60
           M SKSK++NPHTGDGASPGKIFIGGLAKDT Y  FNKHFG YGEI DSVIMKDR+TGQPR
Sbjct: 1   MGSKSKNDNPHTGDGASPGKIFIGGLAKDTNYATFNKHFGKYGEIVDSVIMKDRFTGQPR 60

Query: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSTVTE 120
           GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPS+ TE
Sbjct: 61  GFGFITYADPSVVDKVIEDTHVINGKQVEIKRTIPKGQGQSKDFKTKKIFVGGIPSSCTE 120

Query: 121 DELKHFFSKFGKVVEHQIIRDHETNRSRGFGFIVFDEEEVVDEILSKGNMIDMSGTQVEI 180
           DE K FF+K+GKVVEHQIIRDHETNRSRGFGFI+FD EEVVDE+LSKGNMIDM+GTQVEI
Sbjct: 121 DEFKSFFAKYGKVVEHQIIRDHETNRSRGFGFIIFDSEEVVDELLSKGNMIDMAGTQVEI 180

Query: 181 KKAEPKKSSNPPPAPAYGSNSRARSFNDGFGGYGGSYGDFDAGFGPGPFRTAGGLGGRIG 240
           KKAEPKK+SNPPPAPAYGSNSRARSFNDGFGG+GGSYG FD G+GPGP+RT  GLG R+G
Sbjct: 181 KKAEPKKASNPPPAPAYGSNSRARSFNDGFGGFGGSYGGFDGGYGPGPYRTPTGLGSRLG 240

Query: 241 GGYGYGS-GGDFGGGYGGFGSSSLGGYRGESSLGYSSRFGPYSGGFGGGYGTSGLGGYGR 300
           GGYGYGS  G+FGGGYG FGSSSLGGYRGESSLGY+SR+GPY GGFGGGYG S LGGYGR
Sbjct: 241 GGYGYGSASGEFGGGYGSFGSSSLGGYRGESSLGYTSRYGPYGGGFGGGYGASSLGGYGR 300

Query: 301 GVDGYGSYGGSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348
           G +GYG YG SGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR
Sbjct: 301 GGEGYGGYGSSGYGGGYDSGPGASYGGAGGLYGRGGYSGSSRYHPYAR 348

The following BLAST results are available for this feature:

BLAST of CmaCh01G010650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNP1_ARATH	5.2e-38	36.83	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana GN=RNP1 PE=1 S...	[more]
HRP1_YEAST	6.4e-36	39.46	Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain...	[more]
YHKF_SCHPO	4.6e-34	38.22	Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain...	[more]
MSI1H_MOUSE	2.5e-32	37.30	RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1	[more]
MSI1H_RAT	2.5e-32	37.30	RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1	[more]

BLAST of CmaCh01G010650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3W8_CUCSA	5.6e-180	95.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G278740 PE=4 SV=1	[more]
A5APB9_VITVI	4.6e-166	88.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g00920 PE=4 SV=...	[more]
A0A067KWH0_JATCU	2.8e-163	87.64	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01070 PE=4 SV=1	[more]
A0A067EVW0_CITSI	2.8e-163	86.78	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018875mg PE=4 SV=1	[more]
B9S9X4_RICCO	5.8e-161	86.49	Heterogeneous nuclear ribonucleoprotein A1, putative OS=Ricinus communis GN=RCOM...	[more]

BLAST of CmaCh01G010650.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13224.2	4.0e-129	73.89	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G40490.1	9.3e-86	59.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G17640.1	1.3e-50	42.95	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G14300.1	2.9e-39	36.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G33410.1	3.0e-36	37.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmaCh01G010650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126124\|ref\|XP_008463022.1\|	3.6e-180	95.97	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo]	[more]
gi\|449463368\|ref\|XP_004149406.1\|	8.0e-180	95.68	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus]	[more]
gi\|225461983\|ref\|XP_002271592.1\|	6.6e-166	88.79	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Vitis vinifera]	[more]
gi\|1009111463\|ref\|XP_015901084.1\|	9.5e-165	87.93	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba]	[more]
gi\|1009138621\|ref\|XP_015886683.1\|	1.6e-164	87.93	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G010650	CmaCh01G010650	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G010650.1	CmaCh01G010650.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G010650.1.three_prime_UTR.1	CmaCh01G010650.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G010650.1.CDS.6	CmaCh01G010650.1.CDS.6	CDS
CmaCh01G010650.1.CDS.5	CmaCh01G010650.1.CDS.5	CDS
CmaCh01G010650.1.CDS.4	CmaCh01G010650.1.CDS.4	CDS
CmaCh01G010650.1.CDS.3	CmaCh01G010650.1.CDS.3	CDS
CmaCh01G010650.1.CDS.2	CmaCh01G010650.1.CDS.2	CDS
CmaCh01G010650.1.CDS.1	CmaCh01G010650.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G010650.1.five_prime_UTR.1	CmaCh01G010650.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G010650.1.exon.6	CmaCh01G010650.1.exon.6	exon
CmaCh01G010650.1.exon.5	CmaCh01G010650.1.exon.5	exon
CmaCh01G010650.1.exon.4	CmaCh01G010650.1.exon.4	exon
CmaCh01G010650.1.exon.3	CmaCh01G010650.1.exon.3	exon
CmaCh01G010650.1.exon.2	CmaCh01G010650.1.exon.2	exon
CmaCh01G010650.1.exon.1	CmaCh01G010650.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 21..88 score: 4.1E-14coord: 109..175 score: 1.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 108..181 score: 7.2E-21coord: 20..91 score: 1.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 19..95 score: 15.323coord: 107..185 score: 18
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 5..98 score: 6.7E-23coord: 99..191 score: 8.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 104..215 score: 1.02E-26coord: 15..100 score: 4.97
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 1..324 score: 1.8E
None	No IPR available	PANTHER	PTHR24012:SF478	GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MJH23	coord: 1..324 score: 1.8E