CmaCh01G002960.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G002960.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	MYB-like DNA-binding domain protein
Location	Cma_Chr01 : 1423113 .. 1424995 (+)
Sequence length	1153

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCAACTCGTTCAAGTTAGATATTATATATTCAAAATCACACCACTTGAAACGATGCCGTTTTGAATCTGGGTGGGTGGCCGGCACCGGCGACGACGACGACGACGACAATGGGTAGACGGCCGTGCTGTGAGAAAGTTGGCCTGAAAAAAGGGAGGTGGACGGCGGAAGAAGATGACCGGTTGAAAAAGTACATTCTTGCTAATGGTGAAGGCTCTTGGAGATCCCTCCCCAAAAATGCAGGTGACTTCCCACCTACATTTTCCCGATAAAATAAATTATTCAACGAGATAGCTATCCTTTTCGTCATTTTTACTAATCTCTTTTTACCGGCCATTGAACGTACGTTGCATCCGTACATCTATCGGTTAAAAAAGATTAGCTATTTTTATAGGACCCGTTATAGTAATTTTTGTTTTTAGGGCTTCTCCGATGCGGGAAGAGTTGCCGACTTCGATGGATCAACTATTTAAGATGTGATTTGGTGCGGGGGAACATTACGACCGACGAAGAAAATCTTATTATTAAACTACATTCTACCTTAGGAAACAGGTAACTCAAATTAGTTTAACTCTTAATTTTAATTATTATAAAGTTTGATTTTTAATTTTTTAATATTTGAAATATATTTCAAAATGAAATTTATAATAGGTAATAAATTGAATGAAAAAATACATCCTTTTTAAGACATAAATTTAATGAGAAAATGAGTTGTTTTAAAGAATTGAAATAATTATTTTTAATAATCTGAAATATATTCTCCCAATGCAGTTCACGAGCTAAGAAGAGAAAAAAAAAATTAAAATAAAGTGAATAATAATATTAATCATTAATTATTATTATTATTTTTGGCTTTTTGTAGACTAAAGTCAAGCATGTCAGACAGGCTAGAATCACAACATGAAAGGAATATGAAAATAGAGGGATAAATTTTAATATAGGGAATAATTTATTTGGATTTTTCTTTATTTTTAATTTTCTATTATTTTGAGAAAATAATTTGGAGGGTTTTATTAATTTTAATAAAAAAATTCACTTTTTAATATGCGAAAAAAAAAAAAGGGAAATATTGTCGTTTTCTAATTTTGATTCAAAATTTTCAGGTGGTCTTTAATCGCTAGTCACCTACCAGGCAGAACAGACAACGAGATAAAAAATTACTGGAACTCTCACTTGAGTCGTCAAATTCATACGATCCGGCGCCGGAGCGGCAACGACGATGGGTCGGTAATTGTCGACGTGGCACGGCTGAGCCTTCCGCCGCGGCGGAAGGGCAGCCGTGGGCGGCGTAGCAAGGAAGCGGCGTTGGCGGTGGAGACAGAGACGGAAACAGAGACGGCGGCGAGAGAGAAAACTGTTTATGGGGCTGTGGATGATCCAGCGGAGGAAAGAGTTAGTTCCAACGACGGAATTATTAGCAAAACGACAGATGTTGGTGGGTCTGCGACGTTGAGTTTTGATAACGACGACATGTCGTTGGACTTGGATGCCTTTTTGGATTGGGACAATGATAACGACGACGACGACATTAAAGTCACCGCCGCTACCGGTGGCGCCGAGGTGGAGACCGGCGGTGAGTGTAGTTCGATTAGTTGTTCGTTCCGTCTGGACAGTCCTTGGAATTGGGAAAGCTTTGTCGATGGGGAGGAATGGGAGACCGGAGAGGATCTCCCCGCCGCCGCCGTGGTGGAATCCGACGCTGTGATTTCTTGGCTCTTATCTTAATCACCGCCGGCGGCGTGATCTTGATTTTGAATGTTTGTAAATTAATGTGTTGATTCTATGGGATATTGGGATCGTTAATTTTGTATATTTTCTTTTAGCTTTCTCTTTGGGACTCTGCAAATCCGTGTAAAGTTCTTTCTTTTTACTTTTTACCGCTG

mRNA sequence

GAGCAACTCGTTCAAGTTAGATATTATATATTCAAAATCACACCACTTGAAACGATGCCGTTTTGAATCTGGGTGGGTGGCCGGCACCGGCGACGACGACGACGACGACAATGGGTAGACGGCCGTGCTGTGAGAAAGTTGGCCTGAAAAAAGGGAGGTGGACGGCGGAAGAAGATGACCGGTTGAAAAAGTACATTCTTGCTAATGGTGAAGGCTCTTGGAGATCCCTCCCCAAAAATGCAGGGCTTCTCCGATGCGGGAAGAGTTGCCGACTTCGATGGATCAACTATTTAAGATGTGATTTGGTGCGGGGGAACATTACGACCGACGAAGAAAATCTTATTATTAAACTACATTCTACCTTAGGAAACAGGTGGTCTTTAATCGCTAGTCACCTACCAGGCAGAACAGACAACGAGATAAAAAATTACTGGAACTCTCACTTGAGTCGTCAAATTCATACGATCCGGCGCCGGAGCGGCAACGACGATGGGTCGGTAATTGTCGACGTGGCACGGCTGAGCCTTCCGCCGCGGCGGAAGGGCAGCCGTGGGCGGCGTAGCAAGGAAGCGGCGTTGGCGGTGGAGACAGAGACGGAAACAGAGACGGCGGCGAGAGAGAAAACTGTTTATGGGGCTGTGGATGATCCAGCGGAGGAAAGAGTTAGTTCCAACGACGGAATTATTAGCAAAACGACAGATGTTGGTGGGTCTGCGACGTTGAGTTTTGATAACGACGACATGTCGTTGGACTTGGATGCCTTTTTGGATTGGGACAATGATAACGACGACGACGACATTAAAGTCACCGCCGCTACCGGTGGCGCCGAGGTGGAGACCGGCGGTGAGTGTAGTTCGATTAGTTGTTCGTTCCGTCTGGACAGTCCTTGGAATTGGGAAAGCTTTGTCGATGGGGAGGAATGGGAGACCGGAGAGGATCTCCCCGCCGCCGCCGTGGTGGAATCCGACGCTGTGATTTCTTGGCTCTTATCTTAATCACCGCCGGCGGCGTGATCTTGATTTTGAATGTTTGTAAATTAATGTGTTGATTCTATGGGATATTGGGATCGTTAATTTTGTATATTTTCTTTTAGCTTTCTCTTTGGGACTCTGCAAATCCGTGTAAAGTTCTTTCTTTTTACTTTTTACCGCTG

Coding sequence (CDS)

ATGGGTAGACGGCCGTGCTGTGAGAAAGTTGGCCTGAAAAAAGGGAGGTGGACGGCGGAAGAAGATGACCGGTTGAAAAAGTACATTCTTGCTAATGGTGAAGGCTCTTGGAGATCCCTCCCCAAAAATGCAGGGCTTCTCCGATGCGGGAAGAGTTGCCGACTTCGATGGATCAACTATTTAAGATGTGATTTGGTGCGGGGGAACATTACGACCGACGAAGAAAATCTTATTATTAAACTACATTCTACCTTAGGAAACAGGTGGTCTTTAATCGCTAGTCACCTACCAGGCAGAACAGACAACGAGATAAAAAATTACTGGAACTCTCACTTGAGTCGTCAAATTCATACGATCCGGCGCCGGAGCGGCAACGACGATGGGTCGGTAATTGTCGACGTGGCACGGCTGAGCCTTCCGCCGCGGCGGAAGGGCAGCCGTGGGCGGCGTAGCAAGGAAGCGGCGTTGGCGGTGGAGACAGAGACGGAAACAGAGACGGCGGCGAGAGAGAAAACTGTTTATGGGGCTGTGGATGATCCAGCGGAGGAAAGAGTTAGTTCCAACGACGGAATTATTAGCAAAACGACAGATGTTGGTGGGTCTGCGACGTTGAGTTTTGATAACGACGACATGTCGTTGGACTTGGATGCCTTTTTGGATTGGGACAATGATAACGACGACGACGACATTAAAGTCACCGCCGCTACCGGTGGCGCCGAGGTGGAGACCGGCGGTGAGTGTAGTTCGATTAGTTGTTCGTTCCGTCTGGACAGTCCTTGGAATTGGGAAAGCTTTGTCGATGGGGAGGAATGGGAGACCGGAGAGGATCTCCCCGCCGCCGCCGTGGTGGAATCCGACGCTGTGATTTCTTGGCTCTTATCTTAA

Protein sequence

MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIRRRSGNDDGSVIVDVARLSLPPRRKGSRGRRSKEAALAVETETETETAAREKTVYGAVDDPAEERVSSNDGIISKTTDVGGSATLSFDNDDMSLDLDAFLDWDNDNDDDDIKVTAATGGAEVETGGECSSISCSFRLDSPWNWESFVDGEEWETGEDLPAAAVVESDAVISWLLS

Homology

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BLAST of CmaCh01G002960.1 vs. Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.4e-62
Identity = 124/214 (57.94%), Postives = 151/214 (70.56%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVGLK+GRWTAEED  L  YI  +GEGSWRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRTPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR D+ RGNI+ +EE++IIKLH+TLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHT R
Sbjct: 61  LRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYR 120

Query: 121 RR--SGNDDGSVIVDVARLSLPPRRKGSR--GRRSKEAALAVET--------ETETETAA 180
           R+  +G DD ++ +D+++L    RR+G R  GR  K +A   +         E +   AA
Sbjct: 121 RKYTAGPDDTAIAIDMSKLQSADRRRGGRTPGRPPKASASRTKQADADQPGGEAKGPAAA 180

Query: 181 REKTVYGAVDDPAEERVSSNDGIISKTTDVGGSA 203
                +  V +P   + +S+ G      + G S+
Sbjct: 181 ASSPRHSDVVNPGPNQPNSSSGSTGTAEEEGPSS 214

[Close]

BLAST of CmaCh01G002960.1 vs. Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 7.3e-57
Identity = 125/239 (52.30%), Postives = 149/239 (62.34%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVG+K+GRWTAEED  L  YI +NGEGSWRSLPKNAGL RCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHT-I 120
           LR DL RGNIT +EE L++KLHSTLGNRWSLIA HLPGRTDNEIKNYWNSHLSR++H  I
Sbjct: 61  LRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHNFI 120

Query: 121 RRRSGNDDGSVIVDVARLSLPPRRKGSR--GRRSKEAALAVETETETETAAREKT----- 180
           R+ S + D S ++     S PP  +  R  GR S+ A       T+T    +        
Sbjct: 121 RKPSISQDVSAVIMTNASSAPPPPQAKRRLGRTSRSAMKPKIHRTKTRKTKKTSAPPEPN 180

Query: 181 --VYGAVDDPAEERVSSNDGIISKTTDV-------------GGSATLSFDNDDMSLDLD 217
             V GA  +      S  +  + +  D              G +  L+FD+D + L LD
Sbjct: 181 ADVAGADKEALMVESSGAEAELGRPCDYYGDDCNKNLMSINGDNGVLTFDDDIIDLLLD 239

[Close]

BLAST of CmaCh01G002960.1 vs. Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 6.2e-48
Identity = 99/163 (60.74%), Postives = 113/163 (69.33%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEK    KG WT EEDDRL  YI A+GEG WRSLPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHL-----SRQ 120
           LR DL RGN + +E+ LIIKLHS LGN+WSLIA  LPGRTDNEIKNYWN+H+     SR 
Sbjct: 61  LRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRG 120

Query: 121 IHTIRRRSGNDDGSVI-VDVARLSLPPRRKGSRGRRSKEAALA 158
           I  +  R+ N D +   + ++  S     KG+  RR  E A A
Sbjct: 121 IDPVTHRAINSDHAASNITISFESAQRDDKGAVFRRDAEPAKA 163

[Close]

BLAST of CmaCh01G002960.1 vs. Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.0e-47
Identity = 107/213 (50.23%), Postives = 129/213 (60.56%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEK    KG WT EEDDRL  YI A+GEG WRSLPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSH-----LSRQ 120
           LR DL RGN T +E+ LIIKLHS LGN+WSLIA  LPGRTDNEIKNYWN+H     LSR 
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRG 120

Query: 121 IHTIRRRSGNDDGSVIVDVARLSLPPRRKGSRGRRSKEAA--LAVETETETETAAREKTV 180
           I     RS ND  +    V  +S           + K A   +  E  +  +    +  +
Sbjct: 121 IDPTTHRSINDGTASQDQVTTISFSNANSKEEDTKHKVAVDIMIKEENSPVQERCPDLNL 180

Query: 181 YGAVDDPAEERVSSNDGIISKTTDVGGSATLSF 207
              +  P +++++ +   + KT    GS+TL F
Sbjct: 181 DLKISPPCQQQINYHQENL-KTGGRNGSSTLCF 212

[Close]

BLAST of CmaCh01G002960.1 vs. Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.4e-47
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEK    +G WT EED+RL  YI A+GEG WRSLPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 117
           LR DL RGN T DE++LI+KLHS LGN+WSLIA+ LPGRTDNEIKNYWN+H+ R++
Sbjct: 61  LRPDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKL 116

[Close]

BLAST of CmaCh01G002960.1 vs. TrEMBL
Match: A0A096ZXF2_BETVU (R2R3-MYB flavonol regulator OS=Beta vulgaris subsp. vulgaris GN=MYB12 PE=2 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 5.2e-62
Identity = 108/151 (71.52%), Postives = 129/151 (85.43%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEK+GLK+GRWT EED +L KYI  NGEGSWRS+PKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKIGLKRGRWTDEEDQKLMKYIEENGEGSWRSMPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR DL RGNIT +EE +IIKLH+T+GNRWS+IA+ LPGRTDNEIKNYWNSHLSR+IHT R
Sbjct: 61  LRSDLRRGNITPEEEEIIIKLHATMGNRWSMIAAQLPGRTDNEIKNYWNSHLSRKIHTFR 120

Query: 121 RRSGNDDGSVIVDVARLSLPPRRKGSRGRRS 152
           R +G D+G + + ++  ++PP+R+G R  RS
Sbjct: 121 RFNGEDNGKIFISLSHTNMPPKRRGGRTSRS 151

[Close]

BLAST of CmaCh01G002960.1 vs. TrEMBL
Match: A0A142D8G0_9CARY (Myb transcription factor 4 OS=Silene littorea PE=2 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 9.8e-61
Identity = 145/329 (44.07%), Postives = 187/329 (56.84%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVGL++GRWT EEDD+L  YIL +GEG WRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGLRRGRWTTEEDDKLVNYILQHGEGCWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR DL RGNI+  EE+LII+LH+TLGNRWS IA+ LPGRTDNEIKNYWNSHLSR+IHTIR
Sbjct: 61  LRSDLKRGNISPQEEDLIIRLHATLGNRWSTIAAQLPGRTDNEIKNYWNSHLSRRIHTIR 120

Query: 121 RRSGNDDGSVIVDVARLSLPPRRKGSRGRRSKEAALAVETETETETAAREKTVYGAVDDP 180
           R +G  D   +++++ +S PP+R+G  GRRS+ A    +T                + D 
Sbjct: 121 RPNGEKD---VINLSNVSAPPKRRG--GRRSRAAMQRNKTNNNP-----------IISDN 180

Query: 181 AEERVSSNDGIISKTTDVG------------GSATLSFDND------DMSLDLDAFLDWD 240
           +    ++N+   +  TDVG                L FD +      D  + LD  L   
Sbjct: 181 SNTNTNTNNN--NNNTDVGPEFGPTFEDNLVRDVNLMFDQEQELLGIDDVIGLDGLLSTK 240

Query: 241 NDND--DDDIKVT-----------------AATGGAEVETGGECSSISCSFRLDSPWNWE 293
           N++   D+D+  T                  + GG    T    S++SC   +D   +W 
Sbjct: 241 NEDTFVDNDMGPTDGPKEQYSGLAHGSNSIESNGGGSTSTSSSPSTLSCFDHIDGGMDWN 300

[Close]

BLAST of CmaCh01G002960.1 vs. TrEMBL
Match: O24579_MAIZE (P protein OS=Zea mays GN=P1 PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.7e-60
Identity = 124/214 (57.94%), Postives = 151/214 (70.56%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVGLK+GRWTAEED  L  YI  +GEGSWRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR D+ RGNI+ +EE++IIKLH+TLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHT R
Sbjct: 61  LRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYR 120

Query: 121 RR--SGNDDGSVIVDVARLSLPPRRKGSR--GRRSKEAALAVET--------ETETETAA 180
           R+  +G DD ++ +D+++L    RR+G R  GR  K +A   +         E +   AA
Sbjct: 121 RKYTAGPDDTAIAIDMSKLQSADRRRGGRTPGRPPKASASRTKQADADQPGGEAKGPAAA 180

Query: 181 REKTVYGAVDDPAEERVSSNDGIISKTTDVGGSA 203
                +  V +P   + +S+ G      + G S+
Sbjct: 181 ASSPRHSDVVNPGPNQPNSSSGSTGTAEEEGPSS 214

[Close]

BLAST of CmaCh01G002960.1 vs. TrEMBL
Match: A0A151SNJ7_CAJCA (Transcription factor MYB12 OS=Cajanus cajan GN=KK1_002559 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 4.9e-60
Identity = 117/171 (68.42%), Postives = 139/171 (81.29%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVGLKKGRWT EED+ L KYI ANGEGSWRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGLKKGRWTTEEDEILSKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR DL RGNIT +EEN I+KLHS+ GNRWSLIASHLPGRTDNEIKNYWNSHLSR+I++  
Sbjct: 61  LRADLKRGNITAEEENTIVKLHSSFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFP 120

Query: 121 RRSGNDDGSVIVDVARLS--LPPRRKGSRGRRSKEAALAVETETETETAAR 170
           +++    G+V++D A+ +  +PP+RKG  GR S+ A    ++ T+ +T  R
Sbjct: 121 KQA----GAVVMDTAKAATLIPPKRKG--GRTSRWAMKRNKSYTQNDTPQR 165

[Close]

BLAST of CmaCh01G002960.1 vs. TrEMBL
Match: Q9FR09_MAIZE (Myb-like transcription factor OS=Zea mays GN=P2 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 6.4e-60
Identity = 124/212 (58.49%), Postives = 151/212 (71.23%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVGLK+GRWTAEED  L  YI  +GEGSWRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR D+ RGNI+ +EE++IIKLH+TLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHT R
Sbjct: 61  LRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYR 120

Query: 121 RR--SGNDDGSVIVDVARLSLPPRRKGSR--GRRSKEAAL------AVETETETETAARE 180
           R+  +G DD ++ +D+++L    RR+G R  GR  K +A       A +   E + AA  
Sbjct: 121 RKYTAGPDDTAIAIDMSKLQSADRRRGGRTPGRPPKTSASRTKHSDADQPGGEAKGAAAS 180

Query: 181 KTVYGAVDDPAEERVSSNDGIISKTTDVGGSA 203
              +    +P   + +S+ G      + G S+
Sbjct: 181 SPRHSDAVNPGPNQPNSSSGSTGTAEEEGPSS 212

[Close]

BLAST of CmaCh01G002960.1 vs. TAIR10
Match: AT5G49330.1 (AT5G49330.1 myb domain protein 111)

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-58
Identity = 102/134 (76.12%), Postives = 114/134 (85.07%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEK+GLK+GRWTAEED+ L KYI  NGEGSWRSLPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKIGLKRGRWTAEEDEILTKYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR DL RGNIT+DEE +I+KLHS LGNRWSLIA+HLPGRTDNEIKNYWNSHLSR+I+   
Sbjct: 61  LRRDLKRGNITSDEEEIIVKLHSLLGNRWSLIATHLPGRTDNEIKNYWNSHLSRKIYAFT 120

Query: 121 RRSGNDDGSVIVDV 135
             SG+    ++ DV
Sbjct: 121 AVSGDGHNLLVNDV 134

[Close]

BLAST of CmaCh01G002960.1 vs. TAIR10
Match: AT2G47460.1 (AT2G47460.1 myb domain protein 12)

HSP 1 Score: 222.2 bits (565), Expect = 4.1e-58
Identity = 125/239 (52.30%), Postives = 149/239 (62.34%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVG+K+GRWTAEED  L  YI +NGEGSWRSLPKNAGL RCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGIKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHT-I 120
           LR DL RGNIT +EE L++KLHSTLGNRWSLIA HLPGRTDNEIKNYWNSHLSR++H  I
Sbjct: 61  LRSDLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHNFI 120

Query: 121 RRRSGNDDGSVIVDVARLSLPPRRKGSR--GRRSKEAALAVETETETETAAREKT----- 180
           R+ S + D S ++     S PP  +  R  GR S+ A       T+T    +        
Sbjct: 121 RKPSISQDVSAVIMTNASSAPPPPQAKRRLGRTSRSAMKPKIHRTKTRKTKKTSAPPEPN 180

Query: 181 --VYGAVDDPAEERVSSNDGIISKTTDV-------------GGSATLSFDNDDMSLDLD 217
             V GA  +      S  +  + +  D              G +  L+FD+D + L LD
Sbjct: 181 ADVAGADKEALMVESSGAEAELGRPCDYYGDDCNKNLMSINGDNGVLTFDDDIIDLLLD 239

[Close]

BLAST of CmaCh01G002960.1 vs. TAIR10
Match: AT3G62610.1 (AT3G62610.1 myb domain protein 11)

HSP 1 Score: 217.2 bits (552), Expect = 1.3e-56
Identity = 104/151 (68.87%), Postives = 118/151 (78.15%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVG+KKGRWTAEED  L  YI +NGEGSWRSLPKNAGL RCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGIKKGRWTAEEDRTLSDYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR D+ RGNIT +EE++I+KLHSTLG RWS IAS+LPGRTDNEIKNYWNSHLSR++H   
Sbjct: 61  LRSDIKRGNITPEEEDVIVKLHSTLGTRWSTIASNLPGRTDNEIKNYWNSHLSRKLHGYF 120

Query: 121 RRSGNDDGSVIVDVARLSLPPRRKGSRGRRS 152
           R+      +V   V     PP+R+  R  RS
Sbjct: 121 RKP-----TVANTVENAPPPPKRRPGRTSRS 146

[Close]

BLAST of CmaCh01G002960.1 vs. TAIR10
Match: AT2G16720.1 (AT2G16720.1 myb domain protein 7)

HSP 1 Score: 191.0 bits (484), Expect = 1.0e-48
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEK  + KG WT EED+RL  YI ++GEG WRSLP+ AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKEHMNKGAWTKEEDERLVSYIKSHGEGCWRSLPRAAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 117
           LR DL RGN T DE+ LIIKLHS LGN+WSLIA+ LPGRTDNEIKNYWN+H+ R++
Sbjct: 61  LRPDLKRGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKL 116

[Close]

BLAST of CmaCh01G002960.1 vs. TAIR10
Match: AT4G38620.1 (AT4G38620.1 myb domain protein 4)

HSP 1 Score: 190.7 bits (483), Expect = 1.3e-48
Identity = 86/116 (74.14%), Postives = 95/116 (81.90%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEK    KG WT EED+RL  YI A+GEG WRSLPK AGLLRCGKSCRLRWINY
Sbjct: 1   MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI 117
           LR DL RGN T +E+ LIIKLHS LGN+WSLIA  LPGRTDNEIKNYWN+H+ R++
Sbjct: 61  LRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116

[Close]

BLAST of CmaCh01G002960.1 vs. NCBI nr
Match: gi|659108626|ref|XP_008454301.1| (PREDICTED: myb-related protein 308-like [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 4.2e-97
Identity = 211/329 (64.13%), Postives = 234/329 (71.12%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGRRPCC+KVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRRPCCDKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR DL RGNIT++EE++IIKLH++LGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI TIR
Sbjct: 61  LRADLKRGNITSEEEDVIIKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIQTIR 120

Query: 121 RRSGNDDG-SVIVDVARLSLPPRRKGSRGRRSKEAALA-VETETETE------TAAREKT 180
           RR  NDDG SVIVDVAR+SLPPRRKG RGRR KE A   VE E E E      + A    
Sbjct: 121 RR--NDDGDSVIVDVARISLPPRRKGGRGRRRKEEAEGEVEVEVEVEVGREIPSPASGVC 180

Query: 181 VYGAVDDPAEERVSSN--DGIISKTTDVGGSATLSFDN-----DDMSLDLDAFL-----D 240
             G VDD  EE   +   +G      DVGGS TL++ N     D+MSLDLD  L     +
Sbjct: 181 GRGCVDDLREEETINKWPEG----RHDVGGSETLNYSNDVLEEDEMSLDLDELLTNVEVE 240

Query: 241 WDNDNDDD--------------DIKVTAATGGAEVETGGECSSI-SCSFRLDSPWNWESF 295
           WD D +D+              D    A  G AE+E GG+CS I S SF L+SPWNWESF
Sbjct: 241 WDEDYEDEIHKFNTTGTCGSNTDNVSVAPAGAAEMELGGDCSPISSSSFSLNSPWNWESF 300

[Close]

BLAST of CmaCh01G002960.1 vs. NCBI nr
Match: gi|778689398|ref|XP_004152356.2| (PREDICTED: myb-related protein P-like [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 5.7e-94
Identity = 204/322 (63.35%), Postives = 228/322 (70.81%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGRRPCC+KVGLKKGRWT EEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRRPCCDKVGLKKGRWTEEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR DL RGNIT++EE++IIKLH++LGNRWSLIASHLPGRTDNEIKNYWNSHLSRQI T R
Sbjct: 61  LRADLKRGNITSEEEDVIIKLHASLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIQTFR 120

Query: 121 RRSGNDDG-SVIVDVARLSLPPRRKGSRGRRSKEAALAVETETETETAAREKTVYGAVDD 180
           RR  NDDG SVIVDVAR++LPPRRKG RGRR KE +  + +   +E         G VD+
Sbjct: 121 RR--NDDGDSVIVDVARINLPPRRKGGRGRRRKEES-EIPSPLTSEMERESGGCGGCVDE 180

Query: 181 PAEERVSSNDGIISKTT----DVGGSATLSFDN-----DDMSLDLDAFLDWDNDNDDDDI 240
             EE       II KT     DVGGS T++ +N     D+MSLDLD  L    D +D+  
Sbjct: 181 VREEE------IIKKTPEGRHDVGGSVTVNLNNDVWEEDEMSLDLDELLTSVEDYEDEIH 240

Query: 241 K-VTAAT----------GGAEVETGGECSSISCS--FRLDSPWNWESFVDGEEWETGEDL 295
           K +T  T            AE+E GGECSSIS S    LDSPWNWESF    EW+ GED 
Sbjct: 241 KFITTGTCKSNTDHVSIAPAEMEVGGECSSISSSSLMSLDSPWNWESFAGDIEWDAGEDF 300

[Close]

BLAST of CmaCh01G002960.1 vs. NCBI nr
Match: gi|733213852|ref|NP_001289993.1| (transcription factor MYB12 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 246.1 bits (627), Expect = 7.5e-62
Identity = 108/151 (71.52%), Postives = 129/151 (85.43%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEK+GLK+GRWT EED +L KYI  NGEGSWRS+PKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKIGLKRGRWTDEEDQKLMKYIEENGEGSWRSMPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR DL RGNIT +EE +IIKLH+T+GNRWS+IA+ LPGRTDNEIKNYWNSHLSR+IHT R
Sbjct: 61  LRSDLRRGNITPEEEEIIIKLHATMGNRWSMIAAQLPGRTDNEIKNYWNSHLSRKIHTFR 120

Query: 121 RRSGNDDGSVIVDVARLSLPPRRKGSRGRRS 152
           R +G D+G + + ++  ++PP+R+G R  RS
Sbjct: 121 RFNGEDNGKIFISLSHTNMPPKRRGGRTSRS 151

[Close]

BLAST of CmaCh01G002960.1 vs. NCBI nr
Match: gi|1005743107|gb|AMQ23629.1| (myb transcription factor 4 [Silene littorea])

HSP 1 Score: 241.9 bits (616), Expect = 1.4e-60
Identity = 145/329 (44.07%), Postives = 187/329 (56.84%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVGL++GRWT EEDD+L  YIL +GEG WRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGLRRGRWTTEEDDKLVNYILQHGEGCWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR DL RGNI+  EE+LII+LH+TLGNRWS IA+ LPGRTDNEIKNYWNSHLSR+IHTIR
Sbjct: 61  LRSDLKRGNISPQEEDLIIRLHATLGNRWSTIAAQLPGRTDNEIKNYWNSHLSRRIHTIR 120

Query: 121 RRSGNDDGSVIVDVARLSLPPRRKGSRGRRSKEAALAVETETETETAAREKTVYGAVDDP 180
           R +G  D   +++++ +S PP+R+G  GRRS+ A    +T                + D 
Sbjct: 121 RPNGEKD---VINLSNVSAPPKRRG--GRRSRAAMQRNKTNNNP-----------IISDN 180

Query: 181 AEERVSSNDGIISKTTDVG------------GSATLSFDND------DMSLDLDAFLDWD 240
           +    ++N+   +  TDVG                L FD +      D  + LD  L   
Sbjct: 181 SNTNTNTNNN--NNNTDVGPEFGPTFEDNLVRDVNLMFDQEQELLGIDDVIGLDGLLSTK 240

Query: 241 NDND--DDDIKVT-----------------AATGGAEVETGGECSSISCSFRLDSPWNWE 293
           N++   D+D+  T                  + GG    T    S++SC   +D   +W 
Sbjct: 241 NEDTFVDNDMGPTDGPKEQYSGLAHGSNSIESNGGGSTSTSSSPSTLSCFDHIDGGMDWN 300

[Close]

BLAST of CmaCh01G002960.1 vs. NCBI nr
Match: gi|618857433|ref|NP_001278607.1| (myb-related protein P [Zea mays])

HSP 1 Score: 240.0 bits (611), Expect = 5.4e-60
Identity = 124/214 (57.94%), Postives = 151/214 (70.56%), Query Frame = 1


Query: 1   MGRRPCCEKVGLKKGRWTAEEDDRLKKYILANGEGSWRSLPKNAGLLRCGKSCRLRWINY 60
           MGR PCCEKVGLK+GRWTAEED  L  YI  +GEGSWRSLPKNAGLLRCGKSCRLRWINY
Sbjct: 1   MGRAPCCEKVGLKRGRWTAEEDQLLANYIAEHGEGSWRSLPKNAGLLRCGKSCRLRWINY 60

Query: 61  LRCDLVRGNITTDEENLIIKLHSTLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTIR 120
           LR D+ RGNI+ +EE++IIKLH+TLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHT R
Sbjct: 61  LRADVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQIHTYR 120

Query: 121 RR--SGNDDGSVIVDVARLSLPPRRKGSR--GRRSKEAALAVET--------ETETETAA 180
           R+  +G DD ++ +D+++L    RR+G R  GR  K +A   +         E +   AA
Sbjct: 121 RKYTAGPDDTAIAIDMSKLQSADRRRGGRTPGRPPKASASRTKQADADQPGGEAKGPAAA 180

Query: 181 REKTVYGAVDDPAEERVSSNDGIISKTTDVGGSA 203
                +  V +P   + +S+ G      + G S+
Sbjct: 181 ASSPRHSDVVNPGPNQPNSSSGSTGTAEEEGPSS 214

The following BLAST results are available for this feature:

BLAST of CmaCh01G002960.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYBP_MAIZE	3.4e-62	57.94	Myb-related protein P OS=Zea mays GN=P PE=2 SV=1	[more]
MYB12_ARATH	7.3e-57	52.30	Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1	[more]
MYB1_HORVU	6.2e-48	60.74	Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1	[more]
MYB08_ANTMA	1.0e-47	50.23	Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1	[more]
MYB38_MAIZE	1.4e-47	73.28	Myb-related protein Zm38 OS=Zea mays PE=2 SV=1	[more]

BLAST of CmaCh01G002960.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A096ZXF2_BETVU	5.2e-62	71.52	R2R3-MYB flavonol regulator OS=Beta vulgaris subsp. vulgaris GN=MYB12 PE=2 SV=1	[more]
A0A142D8G0_9CARY	9.8e-61	44.07	Myb transcription factor 4 OS=Silene littorea PE=2 SV=1	[more]
O24579_MAIZE	3.7e-60	57.94	P protein OS=Zea mays GN=P1 PE=2 SV=1	[more]
A0A151SNJ7_CAJCA	4.9e-60	68.42	Transcription factor MYB12 OS=Cajanus cajan GN=KK1_002559 PE=4 SV=1	[more]
Q9FR09_MAIZE	6.4e-60	58.49	Myb-like transcription factor OS=Zea mays GN=P2 PE=4 SV=1	[more]

BLAST of CmaCh01G002960.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49330.1	1.1e-58	76.12	myb domain protein 111	[more]
AT2G47460.1	4.1e-58	52.30	myb domain protein 12	[more]
AT3G62610.1	1.3e-56	68.87	myb domain protein 11	[more]
AT2G16720.1	1.0e-48	73.28	myb domain protein 7	[more]
AT4G38620.1	1.3e-48	74.14	myb domain protein 4	[more]

BLAST of CmaCh01G002960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659108626\|ref\|XP_008454301.1\|	4.2e-97	64.13	PREDICTED: myb-related protein 308-like [Cucumis melo]	[more]
gi\|778689398\|ref\|XP_004152356.2\|	5.7e-94	63.35	PREDICTED: myb-related protein P-like [Cucumis sativus]	[more]
gi\|733213852\|ref\|NP_001289993.1\|	7.5e-62	71.52	transcription factor MYB12 [Beta vulgaris subsp. vulgaris]	[more]
gi\|1005743107\|gb\|AMQ23629.1\|	1.4e-60	44.07	myb transcription factor 4 [Silene littorea]	[more]
gi\|618857433\|ref\|NP_001278607.1\|	5.4e-60	57.94	myb-related protein P [Zea mays]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh01G002960	CmaCh01G002960	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh01G002960.1	CmaCh01G002960.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G002960.1.exon.1	CmaCh01G002960.1.exon.1	exon
CmaCh01G002960.1.exon.2	CmaCh01G002960.1.exon.2	exon
CmaCh01G002960.1.exon.3	CmaCh01G002960.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G002960.1.five_prime_UTR.1	CmaCh01G002960.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G002960.1.CDS.1	CmaCh01G002960.1.CDS.1	CDS
CmaCh01G002960.1.CDS.2	CmaCh01G002960.1.CDS.2	CDS
CmaCh01G002960.1.CDS.3	CmaCh01G002960.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh01G002960.1.three_prime_UTR.1	CmaCh01G002960.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 67..112 score: 1.6E-15coord: 14..61 score: 9.8
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..63 score: 1.0E-10coord: 66..114 score: 1.2
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 65..116 score: 6.8E-24coord: 5..64 score: 3.3
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 11..108 score: 1.35
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 62..116 score: 23.656coord: 9..61 score: 16
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 246..277 score: 2.8E-100coord: 1..119 score: 2.8E-100coord: 143..196 score: 2.8E
None	No IPR available	PANTHER	PTHR10641:SF595	MYB TRANSCRIPTION FACTOR	coord: 246..277 score: 2.8E-100coord: 143..196 score: 2.8E-100coord: 1..119 score: 2.8E