Cla97C06G111170.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C06G111170.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	DNA-directed RNA polymerase subunit beta
Location	Cla97Chr06 : 1833405 .. 1834023 (+)
Sequence length	168

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGTGCATTTTGGGGGACACGGGTATTGGAGATTGTGAAGAAGCACGATTCTGGAGGTTTAGTCTGGAAGAGAATTAAGCTCACCACAACTCGTAAAGCCAACGCCAAGAAAAGGCTTCTTCGTGTTTGGCAGGTTCTTTCTCTATTTCAATCTCAATGTCACTTTACTATTTATGCCCGCCATTAGTTTGTGCTAGAAGAATCTCTGGAGTTTCGTTCTGAAACAGCAAATACTCGATTATCTGACAATATCTTGCTCTGAGTTGGTTTTTGGAGTAGAACTCTGGGGGTTTAGATATAATTGTACGAATAGAAGGAAAAAAAAAGATGATGACACTGAATCACTCAATACAGTTAATGTCGAAGCAAATGAAGTAGATTTAGGAGACTCCTTAGCTTGTTTTTTTTATATGCGTTGGAATGACATTTTCTGTAAGCAGTGTAGGAAATATTGGAAACCATTTGACTGTTAACTAACAATGAGACCAAGGATGCCCATTACGTTTGGGATATATCTATTTGCATGTGCAGTACTTTTGCATTTTTACATCACTTTCCATTGTTTAATTGGGATTTTTGTGCAGTATAAGGCATTAGTGGCCGAGAAACCTTGA

mRNA sequence

ATGGCGGGTGCATTTTGGGGGACACGGGTATTGGAGATTGTGAAGAAGCACGATTCTGGAGGTTTAGTCTGGAAGAGAATTAAGCTCACCACAACTCGTAAAGCCAACGCCAAGAAAAGGCTTCTTCGTGTTTGGCAGTATAAGGCATTAGTGGCCGAGAAACCTTGA

Coding sequence (CDS)

ATGGCGGGTGCATTTTGGGGGACACGGGTATTGGAGATTGTGAAGAAGCACGATTCTGGAGGTTTAGTCTGGAAGAGAATTAAGCTCACCACAACTCGTAAAGCCAACGCCAAGAAAAGGCTTCTTCGTGTTTGGCAGTATAAGGCATTAGTGGCCGAGAAACCTTGA

Protein sequence

MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALVAEKP

Homology

[Close]

BLAST of Cla97C06G111170.1 vs. NCBI nr
Match: XP_007223889.1 (uncharacterized protein LOC18791042 [Prunus persica] >ONI29892.1 hypothetical protein PRUPE_1G220300 [Prunus persica] >ONI29893.1 hypothetical protein PRUPE_1G220300 [Prunus persica])

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV---AEKP 56
          MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++   AE P
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACAETP 58

[Close]

BLAST of Cla97C06G111170.1 vs. NCBI nr
Match: XP_004310116.1 (PREDICTED: uncharacterized protein LOC101295884 [Fragaria vesca subsp. vesca])

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV---AEKP 56
          MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++   AE P
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACAEPP 58

[Close]

BLAST of Cla97C06G111170.1 vs. NCBI nr
Match: XP_008222226.1 (PREDICTED: uncharacterized protein LOC103322122 [Prunus mume])

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV---AEKP 56
          MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++   AE P
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACAETP 58

[Close]

BLAST of Cla97C06G111170.1 vs. NCBI nr
Match: XP_008340257.1 (PREDICTED: uncharacterized protein LOC103403206 [Malus domestica])

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV---AEKP 56
          MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++   AE P
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACAETP 58

[Close]

BLAST of Cla97C06G111170.1 vs. NCBI nr
Match: XP_009336456.1 (PREDICTED: uncharacterized protein LOC103929036 [Pyrus x bretschneideri])

HSP 1 Score: 99.0 bits (245), Expect = 5.4e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV---AEKP 56
          MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++   AE P
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACAETP 58

[Close]

BLAST of Cla97C06G111170.1 vs. TrEMBL
Match: tr|M5XTZ7|M5XTZ7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G220300 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.6e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV---AEKP 56
          MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++   AE P
Sbjct: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLRACAETP 58

[Close]

BLAST of Cla97C06G111170.1 vs. TrEMBL
Match: tr|A0A200R3Y9|A0A200R3Y9_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1837g240 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV---AEKP 56
          MAGAFWGTRV+EIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++   AE P
Sbjct: 1  MAGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACAEPP 58

[Close]

BLAST of Cla97C06G111170.1 vs. TrEMBL
Match: tr|A0A2P6R059|A0A2P6R059_ROSCH (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0429451 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 6.1e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV---AEKP 56
          MAGAFWGTRV+EIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++   AE P
Sbjct: 1  MAGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVLKACAEPP 58

[Close]

BLAST of Cla97C06G111170.1 vs. TrEMBL
Match: tr|A0A2P5F206|A0A2P5F206_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_124310 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.9e-18
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV 52
          MAGAFWGTRV+EIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++
Sbjct: 1  MAGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL 51

[Close]

BLAST of Cla97C06G111170.1 vs. TrEMBL
Match: tr|A0A2P5BSU9|A0A2P5BSU9_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_213000 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.9e-18
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MAGAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV 52
          MAGAFWGTRV+EIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQ +A++
Sbjct: 1  MAGAFWGTRVMEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQNEAVL 51

[Close]

BLAST of Cla97C06G111170.1 vs. TAIR10
Match: AT1G27435.1 (unknown protein)

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-17
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 0


Query: 3  GAFWGTRVLEIVKKHDSGGLVWKRIKLTTTRKANAKKRLLRVWQYKALV 52
          GAFWGTRV+E+VKKHDSGGL+WKRIKLT TRKANAK RL RVWQ +A++
Sbjct: 6  GAFWGTRVMELVKKHDSGGLLWKRIKLTPTRKANAKTRLRRVWQNEAVL 54

The following BLAST results are available for this feature:

BLAST of Cla97C06G111170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_007223889.1	5.4e-18	86.21	uncharacterized protein LOC18791042 [Prunus persica] >ONI29892.1 hypothetical pr...	[more]
XP_004310116.1	5.4e-18	86.21	PREDICTED: uncharacterized protein LOC101295884 [Fragaria vesca subsp. vesca]	[more]
XP_008222226.1	5.4e-18	86.21	PREDICTED: uncharacterized protein LOC103322122 [Prunus mume]	[more]
XP_008340257.1	5.4e-18	86.21	PREDICTED: uncharacterized protein LOC103403206 [Malus domestica]	[more]
XP_009336456.1	5.4e-18	86.21	PREDICTED: uncharacterized protein LOC103929036 [Pyrus x bretschneideri]	[more]

BLAST of Cla97C06G111170.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M5XTZ7\|M5XTZ7_PRUPE	3.6e-18	86.21	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G220300 PE=4 SV=1	[more]
tr\|A0A200R3Y9\|A0A200R3Y9_9MAGN	6.1e-18	84.48	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1837g240 PE=4 SV=1	[more]
tr\|A0A2P6R059\|A0A2P6R059_ROSCH	6.1e-18	84.48	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0429451 PE=4...	[more]
tr\|A0A2P5F206\|A0A2P5F206_9ROSA	7.9e-18	90.20	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_124310 PE=4 S...	[more]
tr\|A0A2P5BSU9\|A0A2P5BSU9_PARAD	7.9e-18	90.20	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_213000 PE...	[more]

BLAST of Cla97C06G111170.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C06G111170.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G27435.1	1.1e-17	79.59	unknown protein	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032774	RNA biosynthetic process
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C06G111170	Cla97C06G111170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C06G111170.1.exon.1	Cla97C06G111170.1.exon.1	exon
Cla97C06G111170.1.exon.2	Cla97C06G111170.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C06G111170.1.CDS.1	Cla97C06G111170.1.CDS.1	CDS
Cla97C06G111170.1.CDS.2	Cla97C06G111170.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C06G111170.1	Cla97C06G111170.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37703	FAMILY NOT NAMED	coord: 1..51