Cla008867.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla008867
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	50S ribosomal protein L28 (AHRD V1 -- D5RI09_9PROT); contains Interpro domain(s) IPR001383 Ribosomal protein L28
Location	Chr10 : 1350768 .. 1353826 (+)
Sequence length	663

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAGTATGAACCTCTTCTTTTCCTTTATGTTTCTTAAAATCTTTGGTCGAGATTTTCTCTGAATATGAATGTATTTTACTGATTTGCTGAATTCTATGGTGTTAGACCATTAGTCTCTTTGCCAGCATGAGTTAAGGCATCTCCATCTACTCCTTTCTCTGGGGTGTTGCATATTCAAATTTCCACATCCTCATTATACCGAAAAAAAAGAGATAGCTCATTTTTCTTTTTGGAAAAGAAACAATTCCATTGATAGTATGGAAGTATAAATAGGGGAGACCTCATTAGATGGATTACAATAGACCACTACAAATTGGAGAGGGGAGCGGAATAGCCAGGGAGATGGAAGAGGGGAAACATTTACATTAAAAAACTACTAAGGGAGCGTTTGGAATGCAGTTTCAAGTGTTTAATTTAAAAGATAAGTCATTTTGAAAAAATTTGGAGTGTTTAGCAACCACTCAAAATAGATTTTGAAGTGTATTTTAAACAATTTTTATCAAAAGAGTTTAAATAAAAATGAGTTTTTTGAAAAATATTTTTTTCTCAAGTTAATCCAAATGGGCCCTAAGTTAACTACATCTTCAAAAACTCTGTGATAGGGTAGTTCTTCTATCATGGAAGATCTGTTCGTTTCTTTCTTGTCATGTGATCTAGCAGAAGGCTTTAATGAAATCTCTTTGTTAGTCCGTTTGAGATCTATTATTTTTCTTTTAGTCCCTTTTAATTGGAGAAGTCCTTTGCCCCTTCTGGAGGCCTTCTTTGTAATTTCATACCATCAATGAAATTGCTTCTTATGCAAGAAAAAACAGTTAGAAGTGAAGGTGTCATAAATGAATTTAGTGCACTCTAAACTGATAGCATCAGAGACATTTGGCAGAGGCTTCTTGCTGTTACTATTTCACAACTTATATCTTTTCAATTCATGCTTCTAATTTTTCTTTTTGAGTAACAGATGATTGTTACTCATAAGTTTCGTTGGAGGAGTTATTGAATTTTTCGGTTTTCTGCTCTCATTCACTTTGTGAATAGCCATGTATGCCGATGAAAAACCGATGTTCATAGATTACTGGATCACTTATCATACTGGAACTGTGTATTCATTCATGTAAGTTTAGAAATATTGGATTTTCAACCTCAGCAGTCTGAGGTGAATTTTATCTGTTTTTTGGTGCCTTGTTTTGATGATTGTCTGGATTTGGATCTGGGGTTAGCATATGAGTCCATCGTGCTGCTACAACTCTTAACCACACTGTTGATTAGGAATTTGTAGATCTAGAGTCAAGTGGAGGTTTTATTTTGATCATGTAATTTGTTTGCTGTGAGGTTTCTATGCCCCACTCCTATGTCAAATTTATATATATGTGGAAGAACCCTTAGGGTGGGGAGACTGGGACATGAGTTGGGGTTCAGCATGGGTTTGGCTTTCTAAGCTCAATGGTCTAAACTTCTTTTTTTGATATCCGTGAGTGTCCGGGCCAGTTTACACGCACTTCGACTAATCTCACGGGACAACCCGCCTGACCCTACAATATTTGGGTGTCAAAGAAACTCATAGGAAATTAATTCCTAGGTAGGTGGCCACCATGGATTGAATCCTTGATCTCTTAGTCATTTATTGAGACTATGTCTCCTTTTTACCACTAGGCTAATCCATGATGGTTAGTCTCAACCTATTGTTTGACAACCCGAGTTCAATTAAAGAAACCAACCAGCTTGAACAACAGCCTACTATTCCCCCTCCACCCTACAATTTTCAACTCAAGCTTCCTAGATTTGCACTCCAAACACAGAAGAACCTATGACCCAAATGACCCATTAGATCGTTAAAGAAGAGAAAATGAACTTAAAGCGGTGTTTCCTTCTGCGAGCAAATTTTATTGGTTTTGCTGTATATTTGGCCGTTTATTTACTTCTCTACGGCATGGCTCTCTTTCTCTTGTATTCAGAAATTTGAGGCACAATATAATAGTTTTGTTTGGTCAACTTGGAGTGTAATTCTCGATCTTCATAGACAAGTAACAGGATTCTCAATCTTTTCTTATATTCACCATCTATCTAGCACTTAACTGGTGTAAATTGAGTCATCTCTTTTGTACTTTTAGCTTACGTAATCTTTTGTCCAACTGAAAATCTTTTTTTAATCCATTGGAATGACCTCATCATTTTGTAAATGGTTCGTTTTCCTACAAAAGAGAAAAAAAAAGGAAAGAGAAAAAAAAAAAAAAAGCCGTTTTCTTCCATCGTATTGGCTCTATGTCTATATAAGGGTTCGGTGCCTTTTTCAATTCTTTAGCTCACAAACCTTCTTATTGGCATGATCTTATACTGTTTCATTTTGTCATGCGATCATTTTATCAATATTGGAGTATTTAACCTTTATGTGCTGGTGCTTATAGATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

mRNA sequence

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

Coding sequence (CDS)

ATGGCCTTCAGAGGAAAGGAAATGATGAAGAAGATACTAAAGAAAGTTGGAGAGAAAAATTTGGCTCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCGGACAGCAAAGTAGTGATGAATAGGGCAAAGCGTGGTATCTATGCCGGCCGTCACATCCAATTTGGCAACCGTGTCAGTGAAGACGGTGGCAACAAATCAAGGAGGAGTTGGAAACCAAACGTACAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGGATTGATGAGTATCTGCTGAAAACACCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAGATTGAGAAGATGTATGAAGAACTCGGGCAGACAGAGGTCGTTTTCTTCTCGCCAGAGGACGAAGCTAAATTTGAACAAGGCTTTAGAGAACTTAAATTATCCGAGAGGGCAGCGCGAAAGGAGGCAAGAAGACAGATGTATGGCAGTTCAACCAAACACGATCAGATCGAAGAGAGCCAAGAAAACCACCATGGATCTAGTGAGGAAGCTGCAAGTTCTGAAGGAGGCTCCCATGGTGATGATGGTCCTCAGCAGAGGGTTGCCAATTTCTAA

Protein sequence

MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMDTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSSTKHDQIEESQENHHGSSEEAASSEGGSHGDDGPQQRVANF

Homology

[Close]

BLAST of Cla008867 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-12
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 1


Query: 30  KKCIPDSKV----VMNRAKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G+Y G  +QFGN +SE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

[Close]

BLAST of Cla008867 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.5e-10
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN+VS     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

[Close]

BLAST of Cla008867 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-09
Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1


Query: 8   MMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVSEDGGNKS 67
           M  K+L+K+    L   VK  +    P SK   N     +Y G   + GN      G+K+
Sbjct: 1   MASKLLRKLAYPTLP--VKGKIYD--PFSKFQQN-----LYGGSKTEAGNNKIPKFGHKT 60

Query: 68  RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKT 115
           RR W PN   K L+S +L+    + VT+  LR IDK GG+DEYL+K+
Sbjct: 61  RRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKEGGLDEYLVKS 98

[Close]

BLAST of Cla008867 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.5e-09
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 43  AKRGIYAGRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN VS    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

[Close]

BLAST of Cla008867 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1


Query: 50  GRHIQFGNRVSEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +Q GN VS    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTEIGLFWKAKIEKMYE 137
            LL  P  +++ +     K +I+K  E
Sbjct: 69  ALLDIPDARLNQDARRV-KKQIQKAIE 93

[Close]

BLAST of Cla008867 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 1.6e-103
Identity = 191/220 (86.82%), Postives = 203/220 (92.27%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEE-AASSEGGSHGDDGPQQRVAN 220
            K +QI+E  E  +GSSEE AASSEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of Cla008867 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.9e-93
Identity = 172/206 (83.50%), Postives = 188/206 (91.26%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGG 207
            K ++I E++ +H G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of Cla008867 vs. TrEMBL
Match: A0A0B0N4M4_GOSAR (54S ribosomal L24, mitochondrial OS=Gossypium arboreum GN=F383_01611 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.4e-91
Identity = 169/206 (82.04%), Postives = 186/206 (90.29%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILD  IRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDHQIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGG 207
            K ++I E++ +H G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of Cla008867 vs. TrEMBL
Match: A0A067FV36_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.6e-90
Identity = 163/221 (73.76%), Postives = 194/221 (87.78%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-EKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG EKNLAPGVK+SLKKC+PDS++VMNRAKRG++AG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           DTE+GL+WK KIEK+YEELGQTEV FF+PE+EAK EQ F+++KL++RAAR+E RRQMYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STKHDQIEESQENHHGSSEEAAS-SEGGSHGDDGPQQRVAN 220
           S+K  QIE+   +   ++EEAA     G   +  P+  VAN
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVAN 221

[Close]

BLAST of Cla008867 vs. TrEMBL
Match: V4UM17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 2.6e-90
Identity = 163/221 (73.76%), Postives = 194/221 (87.78%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-EKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRV 60
           MAFRGKEMMKK+++KVG EKNLAPGVK+SLKKC+PDS++VMNRAKRG++AG+HIQFGNRV
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RR+WKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGS 180
           DTE+GL+WK KIEK+YEELGQTEV FF+PE+EAK EQ F+++KL++RAAR+E RRQMYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STKHDQIEESQENHHGSSEEAAS-SEGGSHGDDGPQQRVAN 220
           S+K  QIE+   +   ++EEAA     G   +  P+  VAN
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVAN 221

[Close]

BLAST of Cla008867 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 383.6 bits (984), Expect = 2.2e-103
Identity = 191/220 (86.82%), Postives = 203/220 (92.27%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVKDSLKKCIPDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWK+KIE +YEELG+ EVVFFSPEDE KFEQ F+ELKLSERAAR+EARRQMYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TKHDQIEESQENHHGSSEE-AASSEGGSHGDDGPQQRVAN 220
            K +QI+E  E  +GSSEE AASSEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of Cla008867 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 367.9 bits (943), Expect = 1.3e-98
Identity = 187/221 (84.62%), Postives = 202/221 (91.40%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKKILKKVGE NLAPGVK+SLKK +PDSK+VM RA RGIYAGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIE +YEELG+ EVVFFSPEDEAKFEQ F++LKLSERAARKEARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 T-KHDQIEESQENHHGSSEEAASSEGGSHG-DDGPQQRVAN 220
           T K +QI+E  E+ + SSEEAASSEGGSHG DD  QQ VAN
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAASSEGGSHGDDDSHQQWVAN 221

[Close]

BLAST of Cla008867 vs. NCBI nr
Match: gi|823122027|ref|XP_012469124.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii])

HSP 1 Score: 350.1 bits (897), Expect = 2.8e-93
Identity = 172/206 (83.50%), Postives = 188/206 (91.26%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF+ELKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGG 207
            K ++I E++ +H G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of Cla008867 vs. NCBI nr
Match: gi|728825208|gb|KHG06146.1| (54S ribosomal L24, mitochondrial [Gossypium arboreum])

HSP 1 Score: 344.0 bits (881), Expect = 2.0e-91
Identity = 169/206 (82.04%), Postives = 186/206 (90.29%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMKK+LKKVGEKNLA GVK+ L+K IPDSKVVMNRAKRG+YAGRHIQFGNR+S
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRSWKPNVQEKRLFSYILD  IRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDHQIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEKMYEELGQ EVVFFSPEDEAKFEQGF++LKL+ERAAR++ARRQMYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKDLKLAERAARRDARRQMYGWS 180

Query: 181 TKHDQIEESQENHHGSSEEAASSEGG 207
            K ++I E++ +H G+      S  G
Sbjct: 181 GKLEEI-ENRRSHDGTGNAGEDSSDG 205

[Close]

BLAST of Cla008867 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 342.8 bits (878), Expect = 4.4e-91
Identity = 165/200 (82.50%), Postives = 185/200 (92.50%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGEKNLAPGVKDSLKKCIPDSKVVMNRAKRGIYAGRHIQFGNRVS 60
           MAFRGKEMMK I+KKVGEKN+APGVK+SLKKCIPDSK+VMNRAKRGI+AGRHI+FGNRVS
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 121 TEIGLFWKAKIEKMYEELGQTEVVFFSPEDEAKFEQGFRELKLSERAARKEARRQMYGSS 180
           TE+GLFWKAKIEK+YEELGQ EVVFFSPEDE KFEQ F+EL+L+E+AA+KEAR+QM+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 181 TKHDQIEESQENHHGSSEEA 201
            K  Q+EE +  +  + EEA
Sbjct: 181 GKLKQMEEGEAKNEETKEEA 200

The following BLAST results are available for this feature:

BLAST of Cla008867 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM24_YEAST	6.9e-12	42.05	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
RL28_MAGMM	6.5e-10	45.07	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RM24_SCHPO	5.5e-09	37.38	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]
RL28_GLUDA	5.5e-09	40.00	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RL28_RHOCS	2.1e-08	39.08	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]

BLAST of Cla008867 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P8_CUCSA	1.6e-103	86.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1	[more]
A0A0D2PMQ4_GOSRA	1.9e-93	83.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1	[more]
A0A0B0N4M4_GOSAR	1.4e-91	82.04	54S ribosomal L24, mitochondrial OS=Gossypium arboreum GN=F383_01611 PE=3 SV=1	[more]
A0A067FV36_CITSI	2.6e-90	73.76	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1	[more]
V4UM17_9ROSI	2.6e-90	73.76	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1	[more]

BLAST of Cla008867 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456779\|ref\|XP_004146126.1\|	2.2e-103	86.82	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]	[more]
gi\|659095444\|ref\|XP_008448584.1\|	1.3e-98	84.62	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]	[more]
gi\|823122027\|ref\|XP_012469124.1\|	2.8e-93	83.50	PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii]	[more]
gi\|728825208\|gb\|KHG06146.1\|	2.0e-91	82.04	54S ribosomal L24, mitochondrial [Gossypium arboreum]	[more]
gi\|1009136027\|ref\|XP_015885311.1\|	4.4e-91	82.50	PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla008867	Cla008867	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla008867	Cla008867.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla008867.1.cds1	Cla008867.1.cds1	CDS
Cla008867.1.cds2	Cla008867.1.cds2	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 23..177 score: 1.1
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 46..103 score: 3.9
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 43..118 score: 6.6
None	No IPR available	unknown	SSF143800	L28p-like	coord: 43..119 score: 8.83