Carg25833-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25833-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glucose-induced degradation protein like
Location	Cucurbita_argyrosperma_scaffold_356 : 69353 .. 70059 (+)
Sequence length	624

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGTCTTTTATCAAGAAGACCCACCAAATCCTTCTAAGAAATCCTTTCTAGCAGCTGCTTTGAAGGATGCATTTTGCAACTGCCATACTTTTAGCAGACAGCTACCGAATTCAAACGCAGAGGACAAATATCCTACGAGTGACTTCGATGATGAAGAGGAAGTACTCACCAGCTAATTCTTTTGTTTTCTCTTTCATCTTATATGAAATCTGTTTCTCTTAAGTTTTTTTTATCTTCTTCTCAGGAAATTGTATCAGAAATCAGAAGTCGAGCAATGGAAAAGTTGAGACGAAAGACTAACCTGTCGGACAGCTTTTCCTGGGTTTTCTCACCTGCAACCAAAGAATTGTATATAACATCAATGGAGATTGAGAAAATGGGTGAGTCTAGAAATGAAGATAACACAGGAGATGAGTTCTACTCAGTTCAGAGTTTTCTCACATGTTGTTCAAGTGCTGCAACCAAGGAAGCATTCTTTTCTGTGGAGGCCAACTTTTCCCGAGGTTCGAGCTTAAATGGTCTTGATTTTGTAGACGAAGATCTCAAGAGGCACACTGCCTTGCAGGAACTTTGTCATTGTGAAGGATGGCCGTTCGGTCTTTGCAGGAAGGCACTGTTCCTTCCTCCTCTGCCCAAGTCGCCATCTGAATCTTGGTCATGGAGTAAATGGAATAAAGGCACCAAAGTTGTAAAGACATATTGA

mRNA sequence

ATGGGGGTCTTTTATCAAGAAGACCCACCAAATCCTTCTAAGAAATCCTTTCTAGCAGCTGCTTTGAAGGATGCATTTTGCAACTGCCATACTTTTAGCAGACAGCTACCGAATTCAAACGCAGAGGACAAATATCCTACGAGTGACTTCGATGATGAAGAGGAAGAAATTGTATCAGAAATCAGAAGTCGAGCAATGGAAAAGTTGAGACGAAAGACTAACCTGTCGGACAGCTTTTCCTGGGTTTTCTCACCTGCAACCAAAGAATTGTATATAACATCAATGGAGATTGAGAAAATGGGTGAGTCTAGAAATGAAGATAACACAGGAGATGAGTTCTACTCAGTTCAGAGTTTTCTCACATGTTGTTCAAGTGCTGCAACCAAGGAAGCATTCTTTTCTGTGGAGGCCAACTTTTCCCGAGGTTCGAGCTTAAATGGTCTTGATTTTGTAGACGAAGATCTCAAGAGGCACACTGCCTTGCAGGAACTTTGTCATTGTGAAGGATGGCCGTTCGGTCTTTGCAGGAAGGCACTGTTCCTTCCTCCTCTGCCCAAGTCGCCATCTGAATCTTGGTCATGGAGTAAATGGAATAAAGGCACCAAAGTTGTAAAGACATATTGA

Coding sequence (CDS)

ATGGGGGTCTTTTATCAAGAAGACCCACCAAATCCTTCTAAGAAATCCTTTCTAGCAGCTGCTTTGAAGGATGCATTTTGCAACTGCCATACTTTTAGCAGACAGCTACCGAATTCAAACGCAGAGGACAAATATCCTACGAGTGACTTCGATGATGAAGAGGAAGAAATTGTATCAGAAATCAGAAGTCGAGCAATGGAAAAGTTGAGACGAAAGACTAACCTGTCGGACAGCTTTTCCTGGGTTTTCTCACCTGCAACCAAAGAATTGTATATAACATCAATGGAGATTGAGAAAATGGGTGAGTCTAGAAATGAAGATAACACAGGAGATGAGTTCTACTCAGTTCAGAGTTTTCTCACATGTTGTTCAAGTGCTGCAACCAAGGAAGCATTCTTTTCTGTGGAGGCCAACTTTTCCCGAGGTTCGAGCTTAAATGGTCTTGATTTTGTAGACGAAGATCTCAAGAGGCACACTGCCTTGCAGGAACTTTGTCATTGTGAAGGATGGCCGTTCGGTCTTTGCAGGAAGGCACTGTTCCTTCCTCCTCTGCCCAAGTCGCCATCTGAATCTTGGTCATGGAGTAAATGGAATAAAGGCACCAAAGTTGTAAAGACATATTGA

Protein sequence

MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSEIRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFLTCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALFLPPLPKSPSESWSWSKWNKGTKVVKTY

Homology

[Close]

BLAST of Carg25833-RA vs. NCBI nr
Match: XP_022951160.1 (uncharacterized protein LOC111454089 [Cucurbita moschata])

HSP 1 Score: 429.9 bits (1104), Expect = 5.0e-117
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE 60
           MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE
Sbjct: 1   MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE 60

Query: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 120
           IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL
Sbjct: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 120

Query: 121 TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 180
           TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF
Sbjct: 121 TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 180

Query: 181 LPPLPKSPSESWSWSKWNKGTKVVKTY 208
           +PPLPKSPSESWSWSKWNKGTKVVKTY
Sbjct: 181 VPPLPKSPSESWSWSKWNKGTKVVKTY 207

[Close]

BLAST of Carg25833-RA vs. NCBI nr
Match: XP_023001944.1 (uncharacterized protein LOC111495972 [Cucurbita maxima])

HSP 1 Score: 420.2 bits (1079), Expect = 4.0e-114
Identity = 203/207 (98.07%), Postives = 204/207 (98.55%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE 60
           MGVFYQEDPPNPSKKSFLAAALKDAFC CHTFSRQL NSNAED YPTSDFDDEEEEIVSE
Sbjct: 16  MGVFYQEDPPNPSKKSFLAAALKDAFCYCHTFSRQLTNSNAEDIYPTSDFDDEEEEIVSE 75

Query: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 120
           IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL
Sbjct: 76  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 135

Query: 121 TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 180
           TCCSSAATKEAFFSVEANFS+GSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF
Sbjct: 136 TCCSSAATKEAFFSVEANFSQGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 195

Query: 181 LPPLPKSPSESWSWSKWNKGTKVVKTY 208
           LPPLPKSPSESWSWSKWNKGTKVVKTY
Sbjct: 196 LPPLPKSPSESWSWSKWNKGTKVVKTY 222

[Close]

BLAST of Carg25833-RA vs. NCBI nr
Match: XP_008444637.1 (PREDICTED: uncharacterized protein LOC103487908 [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 1.1e-95
Identity = 174/207 (84.06%), Postives = 185/207 (89.37%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE 60
           MGVFYQEDPPNPS+K FLA  LKDAFCNCHTF + LP  N ED+YPTSDFDD EEEIVSE
Sbjct: 1   MGVFYQEDPPNPSRKCFLAGVLKDAFCNCHTFRKPLPKFNDEDEYPTSDFDDTEEEIVSE 60

Query: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 120
           IR+RAMEKL+RK NLSDSFSWVFSPATKELYITSMEIEKM ES NEDN GDEFYSVQSFL
Sbjct: 61  IRTRAMEKLKRKANLSDSFSWVFSPATKELYITSMEIEKMDESGNEDNMGDEFYSVQSFL 120

Query: 121 TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 180
           TCCS+AAT EAFFSVEANFSR SSLNGL+F+DEDLKR T LQE+ HCEGWPFGLCRKA+ 
Sbjct: 121 TCCSTAATNEAFFSVEANFSRCSSLNGLNFLDEDLKRRTILQEVFHCEGWPFGLCRKAVL 180

Query: 181 LPPLPKSPSESWSWSKWNKGTKVVKTY 208
           LPPLPKSPSESWSWS   KGTK+VKTY
Sbjct: 181 LPPLPKSPSESWSWS---KGTKIVKTY 204

[Close]

BLAST of Carg25833-RA vs. NCBI nr
Match: XP_004152797.1 (PREDICTED: uncharacterized protein LOC101221028 [Cucumis sativus] >KGN62536.1 hypothetical protein Csa_2G360040 [Cucumis sativus])

HSP 1 Score: 357.8 bits (917), Expect = 2.4e-95
Identity = 174/207 (84.06%), Postives = 185/207 (89.37%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE 60
           MGVFYQEDPPNPS+K FLA ALKDAFCNCHTF + LP  N ED YPTSDFDD EEEIVSE
Sbjct: 1   MGVFYQEDPPNPSRKCFLAGALKDAFCNCHTFRKPLPKFNDEDDYPTSDFDDTEEEIVSE 60

Query: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 120
           IR+RAMEKL+RKTNLSDSFSWVFSPATKELYITSMEIEKM ES NEDN GDEFYSV+SFL
Sbjct: 61  IRTRAMEKLKRKTNLSDSFSWVFSPATKELYITSMEIEKMDESGNEDNMGDEFYSVRSFL 120

Query: 121 TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 180
           TCCS+AAT EAFFSVEANFSR SSLNGL+F+DEDLKR T LQE+ HCEGWPFGLCRKA+ 
Sbjct: 121 TCCSTAATNEAFFSVEANFSRCSSLNGLNFLDEDLKRRTILQEVFHCEGWPFGLCRKAVL 180

Query: 181 LPPLPKSPSESWSWSKWNKGTKVVKTY 208
           LPPLPKSPSESW WS   KGTK+VKTY
Sbjct: 181 LPPLPKSPSESWLWS---KGTKIVKTY 204

[Close]

BLAST of Carg25833-RA vs. NCBI nr
Match: XP_022996469.1 (uncharacterized protein LOC111491711 [Cucurbita maxima])

HSP 1 Score: 356.3 bits (913), Expect = 7.0e-95
Identity = 178/205 (86.83%), Postives = 183/205 (89.27%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE 60
           MGVFYQEDPPNPS+K FLA ALKD  CNCHTF +  PNSNAED YPTSDFDDEEEEIVSE
Sbjct: 1   MGVFYQEDPPNPSRKCFLAGALKDVLCNCHTFGKPQPNSNAEDDYPTSDFDDEEEEIVSE 60

Query: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 120
           IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKM E  NEDNTGDEFYSVQSFL
Sbjct: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMDEPGNEDNTGDEFYSVQSFL 120

Query: 121 TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 180
           T CSSAATKEAFFSVEANFSR SSLNGL+F+DEDLKR T LQEL HCEGWPFGLCRKA  
Sbjct: 121 T-CSSAATKEAFFSVEANFSRCSSLNGLNFLDEDLKRRTILQELFHCEGWPFGLCRKAAL 180

Query: 181 LPPLPKSPSESWSWSKWNKGTKVVK 206
           LPPLPKSPSESW WS   KGTK+VK
Sbjct: 181 LPPLPKSPSESWLWS---KGTKIVK 201

[Close]

BLAST of Carg25833-RA vs. TAIR10
Match: AT1G47410.1 (unknown protein)

HSP 1 Score: 123.6 bits (309), Expect = 1.4e-28
Identity = 78/199 (39.20%), Postives = 110/199 (55.28%), Query Frame = 0


Query: 18  LAAALKDAFCNCHTF-SRQLPNSNAE---DKYPTSDFDDEEEEIVSEIRSRAMEKLRRKT 77
           +A  ++DA   C+    R++  S+ E   D  P  DFD + E +V EIRSRAMEKLR+K 
Sbjct: 8   VATGVRDAITYCYRCKGRKVTLSDHEADDDNKPIGDFDYDHEVVVFEIRSRAMEKLRKKR 67

Query: 78  NLS-DSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQ-SFLTCCSSAATKEA 137
               +  ++ F        +   +IE            +EF SV+ SF  CC S  + E 
Sbjct: 68  RTGMEGLTYKF--------VKEYDIE------------NEFCSVRSSFSECCMSDISIEG 127

Query: 138 FFSVEANFSRGSSLNGLDFVDE-------DLKRHTALQELCHCEGWPFGLCRKALFLPPL 197
           + + +  FSR SSL GL+  ++       ++K+ + +QE CHC+GWPFGL RKA  LPPL
Sbjct: 128 YMTAKTEFSRSSSLKGLELENQWKMHYVNEIKKGSVIQEFCHCQGWPFGLGRKAALLPPL 186

Query: 198 PKSPSESWSWSKWNKGTKV 204
           PKSP+ESWSW K  + T V
Sbjct: 188 PKSPAESWSWRKPTRVTPV 186

[Close]

BLAST of Carg25833-RA vs. TrEMBL
Match: tr|A0A1S3BAA9|A0A1S3BAA9_CUCME (uncharacterized protein LOC103487908 OS=Cucumis melo OX=3656 GN=LOC103487908 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 7.2e-96
Identity = 174/207 (84.06%), Postives = 185/207 (89.37%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE 60
           MGVFYQEDPPNPS+K FLA  LKDAFCNCHTF + LP  N ED+YPTSDFDD EEEIVSE
Sbjct: 1   MGVFYQEDPPNPSRKCFLAGVLKDAFCNCHTFRKPLPKFNDEDEYPTSDFDDTEEEIVSE 60

Query: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 120
           IR+RAMEKL+RK NLSDSFSWVFSPATKELYITSMEIEKM ES NEDN GDEFYSVQSFL
Sbjct: 61  IRTRAMEKLKRKANLSDSFSWVFSPATKELYITSMEIEKMDESGNEDNMGDEFYSVQSFL 120

Query: 121 TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 180
           TCCS+AAT EAFFSVEANFSR SSLNGL+F+DEDLKR T LQE+ HCEGWPFGLCRKA+ 
Sbjct: 121 TCCSTAATNEAFFSVEANFSRCSSLNGLNFLDEDLKRRTILQEVFHCEGWPFGLCRKAVL 180

Query: 181 LPPLPKSPSESWSWSKWNKGTKVVKTY 208
           LPPLPKSPSESWSWS   KGTK+VKTY
Sbjct: 181 LPPLPKSPSESWSWS---KGTKIVKTY 204

[Close]

BLAST of Carg25833-RA vs. TrEMBL
Match: tr|A0A0A0LRD5|A0A0A0LRD5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360040 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 1.6e-95
Identity = 174/207 (84.06%), Postives = 185/207 (89.37%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKKSFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVSE 60
           MGVFYQEDPPNPS+K FLA ALKDAFCNCHTF + LP  N ED YPTSDFDD EEEIVSE
Sbjct: 1   MGVFYQEDPPNPSRKCFLAGALKDAFCNCHTFRKPLPKFNDEDDYPTSDFDDTEEEIVSE 60

Query: 61  IRSRAMEKLRRKTNLSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQSFL 120
           IR+RAMEKL+RKTNLSDSFSWVFSPATKELYITSMEIEKM ES NEDN GDEFYSV+SFL
Sbjct: 61  IRTRAMEKLKRKTNLSDSFSWVFSPATKELYITSMEIEKMDESGNEDNMGDEFYSVRSFL 120

Query: 121 TCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRKALF 180
           TCCS+AAT EAFFSVEANFSR SSLNGL+F+DEDLKR T LQE+ HCEGWPFGLCRKA+ 
Sbjct: 121 TCCSTAATNEAFFSVEANFSRCSSLNGLNFLDEDLKRRTILQEVFHCEGWPFGLCRKAVL 180

Query: 181 LPPLPKSPSESWSWSKWNKGTKVVKTY 208
           LPPLPKSPSESW WS   KGTK+VKTY
Sbjct: 181 LPPLPKSPSESWLWS---KGTKIVKTY 204

[Close]

BLAST of Carg25833-RA vs. TrEMBL
Match: tr|A0A061FAY9|A0A061FAY9_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_033876 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 4.6e-58
Identity = 122/214 (57.01%), Postives = 154/214 (71.96%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKK-SFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIVS 60
           M VFYQE+ P  SK+  FLA+ LK+AF NCH F     +S  E++YPTSD DDE E +VS
Sbjct: 1   MSVFYQEEQPRQSKRCKFLASVLKEAFSNCHAFG---GHSGPEEEYPTSDIDDESEVVVS 60

Query: 61  EIRSRAMEKLRRKTNL-SDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQS 120
           EIRSRAMEK++R+ +L +++ SWVFSP+T EL+ITS    K  +  NED   +EF+SV S
Sbjct: 61  EIRSRAMEKMKRRPSLTAENISWVFSPSTGELFITSKH-AKRRDKDNEDEEREEFFSVGS 120

Query: 121 FLTCCSSAATKEAFFSVEANFSRGSSLNGLDFVD------EDLKRHTALQELCHCEGWPF 180
             + CSSA ++EAF S +ANFSR SSLN +DF D      +D +R + +QE CHCEGWPF
Sbjct: 121 CFSFCSSAVSREAFLSAKANFSRCSSLNKVDFPDFWKFDLQDFRRRSIIQEFCHCEGWPF 180

Query: 181 GLCRKALFLPPLPKSPSESWSWSKWNKGTKVVKT 207
           GLCRKA+ LPPLPKSPSESWS   W KGT++ KT
Sbjct: 181 GLCRKAVLLPPLPKSPSESWS---WRKGTRLAKT 207

[Close]

BLAST of Carg25833-RA vs. TrEMBL
Match: tr|A0A2N9FZH0|A0A2N9FZH0_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20281 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.3e-56
Identity = 116/208 (55.77%), Postives = 151/208 (72.60%), Query Frame = 0


Query: 1   MGVFYQED-PPNPSKK-SFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIV 60
           M VFY E+ PPN SK+  FL A LKD F NCH F R+L  S+ E++Y TSD DDE+E++V
Sbjct: 1   MSVFYHEEPPPNSSKRCKFLTANLKDKFSNCHIFGRRLSTSSLEEEY-TSDCDDEQEDVV 60

Query: 61  SEIRSRAMEKLRRKTN-LSDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQ 120
           S IRSRA EKL+RK + L D  SWV+SP T+ELY+T   +++  +          F +V 
Sbjct: 61  SAIRSRAKEKLKRKPSPLPDRISWVYSPMTRELYMTPKAVQREEDYXXXXXXXXXFLTVG 120

Query: 121 SFLTCCSSAATKEAFFSVEANFSRGSSLNGLDFVDEDLKRHTALQELCHCEGWPFGLCRK 180
           S  +CCSSA ++EAF+S+++NFSR SSLNGLDF  ++  R + ++ELCHC+GWPFGLCRK
Sbjct: 121 SCFSCCSSAVSREAFYSIKSNFSRSSSLNGLDF--QEFWRRSIIEELCHCQGWPFGLCRK 180

Query: 181 ALFLPPLPKSPSESWSWSKWNKGTKVVK 206
           A+ LPPLPKSPSESWSWS   KG ++VK
Sbjct: 181 AVLLPPLPKSPSESWSWS---KGPRIVK 202

[Close]

BLAST of Carg25833-RA vs. TrEMBL
Match: tr|A0A2H5NH28|A0A2H5NH28_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044680 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 5.6e-56
Identity = 117/209 (55.98%), Postives = 151/209 (72.25%), Query Frame = 0


Query: 1   MGVFYQEDPPNPSKK--SFLAAALKDAFCNCHTFSRQLPNSNAEDKYPTSDFDDEEEEIV 60
           M VFY E+P +   K   FLA  LKDAF NC +F  +L  S  ED+  T+DFD+E E +V
Sbjct: 1   MSVFYHEEPTHHHSKRCKFLATVLKDAFSNCRSFHGRLSTSRPEDENQTNDFDEELEVVV 60

Query: 61  SEIRSRAMEKLRRKTNL-SDSFSWVFSPATKELYITSMEIEKMGESRNEDNTGDEFYSVQ 120
           SEIRSRAMEKLRRK  L +DSFSWVFSP T+E+YI +++ +K  E   +++  +EF+S+ 
Sbjct: 61  SEIRSRAMEKLRRKPGLMTDSFSWVFSPGTREVYIKALQ-QKEEEDEADEDAREEFFSIG 120

Query: 121 SFLTCCSSAATKEAFFSVEANFSRGSSLNGLDFVD------EDLKRHTALQELCHCEGWP 180
           S L+C SSA + E F+SV+ NFSR SSLNG D+ D      +DL+R + ++ELC+CEGWP
Sbjct: 121 SCLSCYSSAVSGETFYSVKTNFSRSSSLNGFDYQDFRKLDFQDLRR-SIIRELCYCEGWP 180

Query: 181 FGLCRKALFLPPLPKSPSESWSWSKWNKG 201
           FGLCRKA+ LPPLPKSPSESWSW K  +G
Sbjct: 181 FGLCRKAVLLPPLPKSPSESWSWHKGTRG 207

The following BLAST results are available for this feature:

BLAST of Carg25833-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022951160.1	5.0e-117	99.52	uncharacterized protein LOC111454089 [Cucurbita moschata]	[more]
XP_023001944.1	4.0e-114	98.07	uncharacterized protein LOC111495972 [Cucurbita maxima]	[more]
XP_008444637.1	1.1e-95	84.06	PREDICTED: uncharacterized protein LOC103487908 [Cucumis melo]	[more]
XP_004152797.1	2.4e-95	84.06	PREDICTED: uncharacterized protein LOC101221028 [Cucumis sativus] >KGN62536.1 hy...	[more]
XP_022996469.1	7.0e-95	86.83	uncharacterized protein LOC111491711 [Cucurbita maxima]	[more]

BLAST of Carg25833-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47410.1	1.4e-28	39.20	unknown protein	[more]

BLAST of Carg25833-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25833-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BAA9\|A0A1S3BAA9_CUCME	7.2e-96	84.06	uncharacterized protein LOC103487908 OS=Cucumis melo OX=3656 GN=LOC103487908 PE=...	[more]
tr\|A0A0A0LRD5\|A0A0A0LRD5_CUCSA	1.6e-95	84.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360040 PE=4 SV=1	[more]
tr\|A0A061FAY9\|A0A061FAY9_THECC	4.6e-58	57.01	Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_033876 PE=4 ...	[more]
tr\|A0A2N9FZH0\|A0A2N9FZH0_FAGSY	4.3e-56	55.77	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS20281 PE=4 SV=1	[more]
tr\|A0A2H5NH28\|A0A2H5NH28_CITUN	5.6e-56	55.98	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_044680 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg25833	Carg25833	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25833-RA.exon.1	Carg25833-RA.exon.1	exon
Carg25833-RA.exon.2	Carg25833-RA.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg25833-RA.CDS.1	Carg25833-RA.CDS.1	CDS
Carg25833-RA.CDS.2	Carg25833-RA.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg25833-RA	Carg25833-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..52
None	No IPR available	PANTHER	PTHR36324	FAMILY NOT NAMED	coord: 2..202