Carg21398-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg21398-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Intron-encoded endonuclease
Location	Cucurbita_argyrosperma_scaffold_103 : 51413 .. 51877 (-)
Sequence length	465

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATTTCCTCGCGGATTGCTGCAGTCGCCGCTGTCTATTGCTCGGTCGCCGTCATTTTTCTTGCCGGAGGCTCAAATGCTAGGGACTTGCGTCCATCGGAGCACGGCTTGGAGTACCAAAACCCTGGCGCTATTGAAAACTCCTCGCCGGATATGCAATCTTTCTTCAAAGGAAACTCCTGGTCTTCTTCCGATGTCGCGCTTCCGAAGGCGATGAACACTAGCCTGCCGTCGCAGTGGTGGAATCGTAGCCACCGTGACCGCTCTGGAGCCGCTGCCGATGGAGGCGGCGGAGACCACATTCGTGGCGCATTGCTTGTGGCGAGTCTGGTATGTGGAGTTATAGGCGTTTCTTTGCTGATTGCTTCTGCTTTTATTTACGTCTTCAAGTTCAGGAAACAGAATAGATCGTCGTCCTCGCTCTCTGTCTCTGAAACTACTAACATTATTGCTAACAAGTGA

mRNA sequence

ATGGTGATTTCCTCGCGGATTGCTGCAGTCGCCGCTGTCTATTGCTCGGTCGCCGTCATTTTTCTTGCCGGAGGCTCAAATGCTAGGGACTTGCGTCCATCGGAGCACGGCTTGGAGTACCAAAACCCTGGCGCTATTGAAAACTCCTCGCCGGATATGCAATCTTTCTTCAAAGGAAACTCCTGGTCTTCTTCCGATGTCGCGCTTCCGAAGGCGATGAACACTAGCCTGCCGTCGCAGTGGTGGAATCGTAGCCACCGTGACCGCTCTGGAGCCGCTGCCGATGGAGGCGGCGGAGACCACATTCGTGGCGCATTGCTTGTGGCGAGTCTGGTATGTGGAGTTATAGGCGTTTCTTTGCTGATTGCTTCTGCTTTTATTTACGTCTTCAAGTTCAGGAAACAGAATAGATCGTCGTCCTCGCTCTCTGTCTCTGAAACTACTAACATTATTGCTAACAAGTGA

Coding sequence (CDS)

ATGGTGATTTCCTCGCGGATTGCTGCAGTCGCCGCTGTCTATTGCTCGGTCGCCGTCATTTTTCTTGCCGGAGGCTCAAATGCTAGGGACTTGCGTCCATCGGAGCACGGCTTGGAGTACCAAAACCCTGGCGCTATTGAAAACTCCTCGCCGGATATGCAATCTTTCTTCAAAGGAAACTCCTGGTCTTCTTCCGATGTCGCGCTTCCGAAGGCGATGAACACTAGCCTGCCGTCGCAGTGGTGGAATCGTAGCCACCGTGACCGCTCTGGAGCCGCTGCCGATGGAGGCGGCGGAGACCACATTCGTGGCGCATTGCTTGTGGCGAGTCTGGTATGTGGAGTTATAGGCGTTTCTTTGCTGATTGCTTCTGCTTTTATTTACGTCTTCAAGTTCAGGAAACAGAATAGATCGTCGTCCTCGCTCTCTGTCTCTGAAACTACTAACATTATTGCTAACAAGTGA

Protein sequence

MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLLIASAFIYVFKFRKQNRSSSSLSVSETTNIIANK

Homology

[Close]

BLAST of Carg21398-RA vs. NCBI nr
Match: XP_022927447.1 (uncharacterized protein LOC111434271 [Cucurbita moschata])

HSP 1 Score: 268.1 bits (684), Expect = 1.9e-68
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGN 60
           MVISSRIAAVAA+YCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGN
Sbjct: 1   MVISSRIAAVAAIYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGN 60

Query: 61  SWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSL 120
           SWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSL
Sbjct: 61  SWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSL 120

Query: 121 LIASAFIYVFXXXXXXXXXXXLSVSETTNIIANK 155
           LIASAFIYVFXXXXXXXXXXXLSVSETTNIIANK
Sbjct: 121 LIASAFIYVFXXXXXXXXXXXLSVSETTNIIANK 154

[Close]

BLAST of Carg21398-RA vs. NCBI nr
Match: XP_023519911.1 (uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 1.2e-67
Identity = 151/154 (98.05%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGN 60
           MVISSRIAAVAA+YCS+AVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGN
Sbjct: 1   MVISSRIAAVAAIYCSLAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGN 60

Query: 61  SWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSL 120
           SWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAA DGGGGDHIRGALLVASLVCGVIGVSL
Sbjct: 61  SWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAGDGGGGDHIRGALLVASLVCGVIGVSL 120

Query: 121 LIASAFIYVFXXXXXXXXXXXLSVSETTNIIANK 155
           LIASAFIYVFXXXXXXXXXXXLSVSETTNIIANK
Sbjct: 121 LIASAFIYVFXXXXXXXXXXXLSVSETTNIIANK 154

[Close]

BLAST of Carg21398-RA vs. NCBI nr
Match: XP_023000949.1 (uncharacterized protein LOC111495232 [Cucurbita maxima])

HSP 1 Score: 254.6 bits (649), Expect = 2.1e-64
Identity = 146/153 (95.42%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 2   VISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNS 61
           +ISS IAA AA+YCS+AVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNS
Sbjct: 1   MISSEIAAFAAIYCSLAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNS 60

Query: 62  WSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLL 121
           WSSSDVALPKAMNTSLPSQWWNRSHRDRS AAADGG GDHIRGALLVASLVCGVIGVSLL
Sbjct: 61  WSSSDVALPKAMNTSLPSQWWNRSHRDRSEAAADGGSGDHIRGALLVASLVCGVIGVSLL 120

Query: 122 IASAFIYVFXXXXXXXXXXXLSVSETTNIIANK 155
           IASAFIYVFXXXXXXXXXXXLSVSETTNIIANK
Sbjct: 121 IASAFIYVFXXXXXXXXXXXLSVSETTNIIANK 153

[Close]

BLAST of Carg21398-RA vs. NCBI nr
Match: XP_022954449.1 (uncharacterized protein LOC111456713 [Cucurbita moschata] >XP_023542159.1 uncharacterized protein LOC111802125 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 5.9e-46
Identity = 108/155 (69.68%), Postives = 119/155 (76.77%), Query Frame = 0


Query: 1   MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGN 60
           M I S+IAA AAVYC +A IF  G SNARDLRPSEHGLEYQNPGA  NSS +MQSFF+GN
Sbjct: 1   MAIPSQIAAFAAVYCFLAAIFFFGCSNARDLRPSEHGLEYQNPGATGNSSSNMQSFFQGN 60

Query: 61  SWSSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSL 120
           SWSSS+V LPKA+NTSLPSQWWNRSH +RSGA     GGDHIRGAL+V SLVCG+IG SL
Sbjct: 61  SWSSSEVELPKAVNTSLPSQWWNRSHANRSGA-----GGDHIRGALIVVSLVCGIIGFSL 120

Query: 121 LIASAFIYVF-XXXXXXXXXXXLSVSETTNIIANK 155
           LIASAFIY F            LS SET +II +K
Sbjct: 121 LIASAFIYFFKFKKQNSRSPSSLSASETASIIVSK 150

[Close]

BLAST of Carg21398-RA vs. NCBI nr
Match: XP_008445240.1 (PREDICTED: uncharacterized protein LOC103488324 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 2.3e-42
Identity = 115/155 (74.19%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 5   SRIAAVAAVYCSVA--VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSW 64
           S I + A +Y S+A  ++ LA  SNARDLRPSEHGL+YQNP AI+NSSP MQSFFKGNSW
Sbjct: 6   SPIPSFAVLYSSLALIILLLAPLSNARDLRPSEHGLDYQNPDAIQNSSPQMQSFFKGNSW 65

Query: 65  SSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLLI 124
           S+SDVALPKAMNTSLP QWWNRSHR+RSGA+A   GGDHIRGALLVASLVCG+IGVSLL+
Sbjct: 66  SNSDVALPKAMNTSLPPQWWNRSHRNRSGASA--AGGDHIRGALLVASLVCGIIGVSLLV 125

Query: 125 ASAF---IYVFXXXXXXXXXXXLSVSETTNIIANK 155
           ASAF       XXXXXXXXXXX     TTNIIANK
Sbjct: 126 ASAFXXXXXXXXXXXXXXXXXXXXXXXTTNIIANK 158

[Close]

BLAST of Carg21398-RA vs. TAIR10
Match: AT4G21740.1 (unknown protein)

HSP 1 Score: 42.0 bits (97), Expect = 4.0e-04
Identity = 38/116 (32.76%), Postives = 51/116 (43.97%), Query Frame = 0


Query: 19  VIFLAGGSNARDLRPSEHGLEYQ--NPGAIENSSP-DMQSFFKGNSWSSSDVALPKAMNT 78
           ++   G S A +LRPS+HGL+YQ  +P    +S P  M+SF                   
Sbjct: 23  LVIFTGNSLAGELRPSDHGLQYQFSSPPTESHSPPGKMKSFXXXXXXXXXXXXXXXXXXX 82

Query: 79  SLPSQWWNRSHRDRSGAAADGGGGDHI-RGALLVASLVCGVIGVSLLIASAFIYVF 131
                        R GA   G   DH+ R   L AS++CGV GV+LL+    IY F
Sbjct: 83  XXXXXXXXXXXXXRDGA---GIRRDHVMRHVFLAASIICGVSGVALLVVFTLIYFF 135

[Close]

BLAST of Carg21398-RA vs. TrEMBL
Match: tr|A0A1S3BC63|A0A1S3BC63_CUCME (uncharacterized protein LOC103488324 OS=Cucumis melo OX=3656 GN=LOC103488324 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-42
Identity = 115/155 (74.19%), Postives = 127/155 (81.94%), Query Frame = 0


Query: 5   SRIAAVAAVYCSVA--VIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSW 64
           S I + A +Y S+A  ++ LA  SNARDLRPSEHGL+YQNP AI+NSSP MQSFFKGNSW
Sbjct: 6   SPIPSFAVLYSSLALIILLLAPLSNARDLRPSEHGLDYQNPDAIQNSSPQMQSFFKGNSW 65

Query: 65  SSSDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLLI 124
           S+SDVALPKAMNTSLP QWWNRSHR+RSGA+A   GGDHIRGALLVASLVCG+IGVSLL+
Sbjct: 66  SNSDVALPKAMNTSLPPQWWNRSHRNRSGASA--AGGDHIRGALLVASLVCGIIGVSLLV 125

Query: 125 ASAF---IYVFXXXXXXXXXXXLSVSETTNIIANK 155
           ASAF       XXXXXXXXXXX     TTNIIANK
Sbjct: 126 ASAFXXXXXXXXXXXXXXXXXXXXXXXTTNIIANK 158

[Close]

BLAST of Carg21398-RA vs. TrEMBL
Match: tr|A0A0A0LVV5|A0A0A0LVV5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538210 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.0e-38
Identity = 108/151 (71.52%), Postives = 122/151 (80.79%), Query Frame = 0


Query: 5   SRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSS 64
           S+I ++AA      ++ LA  SNARDLRPSEHGL+YQNP AI +SSP MQSFF+GNSWS+
Sbjct: 6   SQIPSIAA----ALILLLAALSNARDLRPSEHGLDYQNPDAIHSSSPQMQSFFRGNSWSN 65

Query: 65  SDVALPKAMNTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLLIAS 124
           SDVALPKAMNTSLP QW NR+HR+RSGA+A    GDHIRGALLVASLVCG+IGVSLL+AS
Sbjct: 66  SDVALPKAMNTSLPPQWSNRAHRNRSGASA--ADGDHIRGALLVASLVCGIIGVSLLVAS 125

Query: 125 AF-IYVFXXXXXXXXXXXLSVSETTNIIANK 155
           AF     XXXXXXXXXXX     TTNIIANK
Sbjct: 126 AFXXXXXXXXXXXXXXXXXXXXXTTNIIANK 150

[Close]

BLAST of Carg21398-RA vs. TrEMBL
Match: tr|A0A067KFC4|A0A067KFC4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09219 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 58/115 (50.43%), Postives = 77/115 (66.96%), Query Frame = 0


Query: 19  VIFLAGGSNARDLRPSEHGLEYQN-PGAIENSSPDMQSFFKGN----SWSSSDVALPKAM 78
           +I + GGS  R+LRPS HGL+YQ+ P + E   P+++ FF  +    S SSS+VALPKAM
Sbjct: 13  MIMILGGSKGRELRPSYHGLDYQSTPPSGEKLPPEVKEFFGSSSAPTSKSSSNVALPKAM 72

Query: 79  NTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLLIASAFIY 129
           N++  + WWNR   +  G+     GGD +R  LLVASL CGV G +LL+ASAFIY
Sbjct: 73  NSN-DTAWWNRVAGENGGSK----GGDRLRHVLLVASLACGVTGAALLVASAFIY 122

[Close]

BLAST of Carg21398-RA vs. TrEMBL
Match: tr|A0A2I4H4I8|A0A2I4H4I8_9ROSI (uncharacterized protein LOC109013441 OS=Juglans regia OX=51240 GN=LOC109013441 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.2e-16
Identity = 61/135 (45.19%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 1   MVISSRIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGN 60
           MV    IA   A+Y ++  I L G S + +LRPS HGL+YQ+  A E S+ +M+SFF G+
Sbjct: 1   MVSFRGIATAIAIYATLISIALTGESQSHELRPSYHGLDYQSSAAGEKSAQEMRSFFGGS 60

Query: 61  S--WSSSDVALPKAM---NTSLPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGV 120
           S   +SS+VA+P AM   +T   + WW       SG  +   GGDH+R  LLVAS+ CGV
Sbjct: 61  SPTSTSSNVAMPNAMDSNSTDNDTSWW-------SGRGSH--GGDHVRQVLLVASVACGV 120

Query: 121 IGVSLLIASAFIYVF 131
            GV+L +ASA +Y+F
Sbjct: 121 TGVALFVASALLYIF 126

[Close]

BLAST of Carg21398-RA vs. TrEMBL
Match: tr|A0A1R3HUC9|A0A1R3HUC9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_26835 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.3e-16
Identity = 58/128 (45.31%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 6   RIAAVAAVYCSVAVIFLAGGSNARDLRPSEHGLEYQNPGAIENSSPDMQSFFKGNSWSS- 65
           R      VY  +  + +   S AR+LRPS+HGLEYQ+       SP+M+SFF  +S  S 
Sbjct: 10  RTMVSVVVYLPLITMIMIRESTARELRPSDHGLEYQSLPPTGLKSPEMRSFFGASSSKSS 69

Query: 66  --SDVALPKAMNTS-LPSQWWNRSHRDRSGAAADGGGGDHIRGALLVASLVCGVIGVSLL 125
             S VALPKAMN++   + WW+  H         G G DH++  LL+ SLVCGV GV+LL
Sbjct: 70  TPSTVALPKAMNSNETETPWWSSRH---------GRGSDHVKQVLLLGSLVCGVTGVALL 128

Query: 126 IASAFIYV 130
           +ASAFIY+
Sbjct: 130 VASAFIYI 128

The following BLAST results are available for this feature:

BLAST of Carg21398-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927447.1	1.9e-68	99.35	uncharacterized protein LOC111434271 [Cucurbita moschata]	[more]
XP_023519911.1	1.2e-67	98.05	uncharacterized protein LOC111783236 [Cucurbita pepo subsp. pepo]	[more]
XP_023000949.1	2.1e-64	95.42	uncharacterized protein LOC111495232 [Cucurbita maxima]	[more]
XP_022954449.1	5.9e-46	69.68	uncharacterized protein LOC111456713 [Cucurbita moschata] >XP_023542159.1 unchar...	[more]
XP_008445240.1	2.3e-42	74.19	PREDICTED: uncharacterized protein LOC103488324 [Cucumis melo]	[more]

BLAST of Carg21398-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21740.1	4.0e-04	32.76	unknown protein	[more]

BLAST of Carg21398-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg21398-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BC63\|A0A1S3BC63_CUCME	1.5e-42	74.19	uncharacterized protein LOC103488324 OS=Cucumis melo OX=3656 GN=LOC103488324 PE=...	[more]
tr\|A0A0A0LVV5\|A0A0A0LVV5_CUCSA	3.0e-38	71.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G538210 PE=4 SV=1	[more]
tr\|A0A067KFC4\|A0A067KFC4_JATCU	1.9e-16	50.43	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_09219 PE=4 SV=1	[more]
tr\|A0A2I4H4I8\|A0A2I4H4I8_9ROSI	4.2e-16	45.19	uncharacterized protein LOC109013441 OS=Juglans regia OX=51240 GN=LOC109013441 P...	[more]
tr\|A0A1R3HUC9\|A0A1R3HUC9_9ROSI	9.3e-16	45.31	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_26835 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg21398	Carg21398	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21398-RA.CDS.1	Carg21398-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg21398-RA.exon.1	Carg21398-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg21398-RA	Carg21398-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37189	FAMILY NOT NAMED	coord: 10..147