Carg16090-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16090-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	At5g35732
Location	Cucurbita_argyrosperma_scaffold_068 : 44853 .. 45113 (+)
Sequence length	261

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACTACAACTGAATTCCCCATCTACGCCGTCGCCAATCACCACCACCATCGCCGCCCTGCTGCTCACCGCACCATCGCCGCCGTCTTCAGCATCATTCGTGCCCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCAACCGTTCACTCCTCCGCCGACACCTTCTGGCTCTCCACCGATCACTATTTTGCCTCCACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGTTACGCCATGTTGATGTAG

mRNA sequence

ATGTTCACTACAACTGAATTCCCCATCTACGCCGTCGCCAATCACCACCACCATCGCCGCCCTGCTGCTCACCGCACCATCGCCGCCGTCTTCAGCATCATTCGTGCCCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCAACCGTTCACTCCTCCGCCGACACCTTCTGGCTCTCCACCGATCACTATTTTGCCTCCACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGTTACGCCATGTTGATGTAG

Coding sequence (CDS)

ATGTTCACTACAACTGAATTCCCCATCTACGCCGTCGCCAATCACCACCACCATCGCCGCCCTGCTGCTCACCGCACCATCGCCGCCGTCTTCAGCATCATTCGTGCCCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCAACCGTTCACTCCTCCGCCGACACCTTCTGGCTCTCCACCGATCACTATTTTGCCTCCACCATTTCCGAGACCAACCACCTTATGGTAAGCGACGGCATGCGTTACGCCATGTTGATGTAG

Protein sequence

MFTTTEFPIYAVANHHHHRRPAAHRTIAAVFSIIRAPFSILSCFAPPTVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM

Homology

[Close]

BLAST of Carg16090-RA vs. NCBI nr
Match: XP_022944204.1 (uncharacterized protein LOC111448722 [Cucurbita moschata])

HSP 1 Score: 152.1 bits (383), Expect = 8.4e-34
Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1   MFTTTEFPIYAVANXXXXXXXXAHRTIAAVFSIIRAPFSILSCFAPPTVHSSADTFWLST 60
           MFTTTEFPIYAVAN  XXX   AHRTIAAVFSIIRAPFSILSCFAPP VHSSADTFWLST
Sbjct: 26  MFTTTEFPIYAVANHHXXXRPAAHRTIAAVFSIIRAPFSILSCFAPPPVHSSADTFWLST 85

Query: 61  DHYFASTISETNHLMVSDGMRYAMLM 87
           DHYFASTISETNHLMVSDGMRYAMLM
Sbjct: 86  DHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Carg16090-RA vs. NCBI nr
Match: XP_022985817.1 (uncharacterized protein LOC111483748 [Cucurbita maxima])

HSP 1 Score: 149.4 bits (376), Expect = 5.4e-33
Identity = 81/86 (94.19%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1   MFTTTEFPIYAVANXXXXXXXXAHRTIAAVFSIIRAPFSILSCFAPPTVHSSADTFWLST 60
           MFTTTEFPIYAVANXXXXXX  AHRT +AVFSIIRAPFSILSCFAPP VHSSADTFWLST
Sbjct: 26  MFTTTEFPIYAVANXXXXXXPAAHRTFSAVFSIIRAPFSILSCFAPPPVHSSADTFWLST 85

Query: 61  DHYFASTISETNHLMVSDGMRYAMLM 87
           DHYFASTISETNHLMVSDGMRYAMLM
Sbjct: 86  DHYFASTISETNHLMVSDGMRYAMLM 111

[Close]

BLAST of Carg16090-RA vs. NCBI nr
Match: XP_023513038.1 (uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 140.2 bits (352), Expect = 3.3e-30
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1   MFTTTEFPIYAVA-NXXXXXXXXAHRTIAAVFSIIRAPFSILSCFAPPTVHSSADTFWLS 60
           MFTTTEFPIYAVA  XXXXXXXX HRT +AVFSIIRAPFSILSCFAPP VHSSADTFWLS
Sbjct: 26  MFTTTEFPIYAVAXXXXXXXXXXXHRTFSAVFSIIRAPFSILSCFAPPPVHSSADTFWLS 85

Query: 61  TDHYFASTISETNHLMVSDGMRYAMLM 87
           TDHYFASTISETNHLMVSDGMRYAMLM
Sbjct: 86  TDHYFASTISETNHLMVSDGMRYAMLM 112

[Close]

BLAST of Carg16090-RA vs. NCBI nr
Match: XP_011656875.1 (PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hypothetical protein Csa_6G110050 [Cucumis sativus])

HSP 1 Score: 112.1 bits (279), Expect = 9.6e-22
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1   MFTTT-EFPIYAVANXXXXXXXXAHRTI-AAVFSIIRAPFSILSCFAPPTVHSSADTFWL 60
           MFT+T +FPIYA AN          RT  +++F+IIRAPFSILSCFAPP VH S D FWL
Sbjct: 26  MFTSTDQFPIYAAANN--------RRTFSSSIFNIIRAPFSILSCFAPPAVHRSPDAFWL 85

Query: 61  STDHYFASTISETNHLMVSDGMRYAMLM 87
           S DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 86  SGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of Carg16090-RA vs. NCBI nr
Match: XP_008455967.1 (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 4.8e-21
Identity = 61/88 (69.32%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MFTTT-EFPIYAVANXXXXXXXXAHRTIA-AVFSIIRAPFSILSCFAPPTVHSSADTFWL 60
           MFTTT +FP YA A           RT + A+F+IIRAPFSILSCFAPP+VH S D FWL
Sbjct: 26  MFTTTDQFPTYAAA-------ANNRRTFSTAIFNIIRAPFSILSCFAPPSVHRSPDAFWL 85

Query: 61  STDHYFASTISETNHLMVSDGMRYAMLM 87
           S DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 86  SGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Carg16090-RA vs. TAIR10
Match: AT5G35732.1 (unknown protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.7e-09
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 33  IIRAPFSILSCFAPPTVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 87
           I+R PFSI+SCFA P V S  D  W+S D+    +ISE NHLMVSD MRYA+LM
Sbjct: 51  IMRFPFSIISCFAVPRV-SGTDGLWVSGDY---GSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of Carg16090-RA vs. TAIR10
Match: AT2G04795.1 (unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-08
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 33 IIRAPFSILSCFAPPTVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAMLM 87
          I++ P SI+SCF+ P V S AD  W+S D+     +SE NHLMV DGMRYA+LM
Sbjct: 46 IMKFPLSIMSCFSVPRV-SRADGVWVSGDY---GRVSEVNHLMVCDGMRYALLM 95

[Close]

BLAST of Carg16090-RA vs. TrEMBL
Match: tr|A0A0A0KFS1|A0A0A0KFS1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.4e-22
Identity = 61/88 (69.32%), Postives = 68/88 (77.27%), Query Frame = 0


Query: 1   MFTTT-EFPIYAVANXXXXXXXXAHRTI-AAVFSIIRAPFSILSCFAPPTVHSSADTFWL 60
           MFT+T +FPIYA AN          RT  +++F+IIRAPFSILSCFAPP VH S D FWL
Sbjct: 26  MFTSTDQFPIYAAANN--------RRTFSSSIFNIIRAPFSILSCFAPPAVHRSPDAFWL 85

Query: 61  STDHYFASTISETNHLMVSDGMRYAMLM 87
           S DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 86  SGDHYFASTISEINHLMVSDGMRYAILM 105

[Close]

BLAST of Carg16090-RA vs. TrEMBL
Match: tr|A0A1S3C290|A0A1S3C290_CUCME (uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-21
Identity = 61/88 (69.32%), Postives = 67/88 (76.14%), Query Frame = 0


Query: 1   MFTTT-EFPIYAVANXXXXXXXXAHRTIA-AVFSIIRAPFSILSCFAPPTVHSSADTFWL 60
           MFTTT +FP YA A           RT + A+F+IIRAPFSILSCFAPP+VH S D FWL
Sbjct: 26  MFTTTDQFPTYAAA-------ANNRRTFSTAIFNIIRAPFSILSCFAPPSVHRSPDAFWL 85

Query: 61  STDHYFASTISETNHLMVSDGMRYAMLM 87
           S DHYFASTISE NHLMVSDGMRYA+LM
Sbjct: 86  SGDHYFASTISEINHLMVSDGMRYAILM 106

[Close]

BLAST of Carg16090-RA vs. TrEMBL
Match: tr|A0A199UAJ2|A0A199UAJ2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S071500 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 0


Query: 25  RTIAAVFSIIRAPFSILSCFAPPTVHSSADTFWLSTDHYFASTISETNHLMVSDGMRYAM 84
           R  +AVF ++ AP SI+SCF+PP  +S  D  W+S   +  + +SE NHLMV+D MRYA+
Sbjct: 54  RGFSAVFRVVLAPLSIISCFSPPHTNSGGDRMWVSGADF--AQLSEMNHLMVNDSMRYAI 113

Query: 85  LM 87
           LM
Sbjct: 114 LM 113

[Close]

BLAST of Carg16090-RA vs. TrEMBL
Match: tr|A0A118K0Z8|A0A118K0Z8_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_019653 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.8e-07
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 23  AHRT------IAAVFSIIRAPFSILSCFAPPTVHSSADTFWLSTDHYFASTISETNHLMV 82
           AHRT      ++ ++SIIRAP S+LSC +    H++AD  W+S +    + ISE NHLMV
Sbjct: 39  AHRTRQGWNGLSFIYSIIRAPISLLSCLSSHPPHAAADGVWVSGEF---ARISEINHLMV 98

Query: 83  SDGMRYAMLM 87
           SD MRYA+LM
Sbjct: 99  SDSMRYAILM 105

[Close]

BLAST of Carg16090-RA vs. TrEMBL
Match: tr|A0A2P5QJV5|A0A2P5QJV5_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23474 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-06
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 25  RTIAAVFSIIRAPFSILSCFAPPTVHS-SADTFWLSTDHYFASTISETNHLMVSDGMRYA 84
           R I+ + S++RAPFS++SCF+ P V+   AD  W+STD    + ISE NH MV D MRYA
Sbjct: 44  RGISGIGSVVRAPFSLVSCFSQPHVNGHGADGVWVSTDF---AQISEMNHFMVRDSMRYA 103

Query: 85  MLM 87
           +LM
Sbjct: 104 ILM 103

The following BLAST results are available for this feature:

BLAST of Carg16090-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944204.1	8.4e-34	93.02	uncharacterized protein LOC111448722 [Cucurbita moschata]	[more]
XP_022985817.1	5.4e-33	94.19	uncharacterized protein LOC111483748 [Cucurbita maxima]	[more]
XP_023513038.1	3.3e-30	93.10	uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo]	[more]
XP_011656875.1	9.6e-22	69.32	PREDICTED: uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hy...	[more]
XP_008455967.1	4.8e-21	69.32	PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo]	[more]

BLAST of Carg16090-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT5G35732.1	1.7e-09	61.11	unknown protein	[more]
AT2G04795.1	3.3e-08	55.56	unknown protein	[more]

BLAST of Carg16090-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16090-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KFS1\|A0A0A0KFS1_CUCSA	6.4e-22	69.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1	[more]
tr\|A0A1S3C290\|A0A1S3C290_CUCME	3.2e-21	69.32	uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=...	[more]
tr\|A0A199UAJ2\|A0A199UAJ2_MANES	3.4e-07	50.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_S071500 PE=4 SV=1	[more]
tr\|A0A118K0Z8\|A0A118K0Z8_CYNCS	9.8e-07	50.00	Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_019...	[more]
tr\|A0A2P5QJV5\|A0A2P5QJV5_GOSBA	1.7e-06	52.38	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23474 PE=4 SV...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg16090	Carg16090	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16090-RA.exon.1	Carg16090-RA.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg16090-RA.CDS.1	Carg16090-RA.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg16090-RA	Carg16090-RA-protein	polypeptide