Carg13987-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCAATTTTCAGCGAAACTAAACTGTCGCCGGACGATAGAGGAGGCAACGGAGAAGAAATCAAGGCTCCAATTGGCTTATCATTGATGGAGCAGGGGAAGCAGGGAGTGGTAGTTAAATTGAGCCCTCCACAGAACCCATTGGAGCAGGTTCAGGCTCGTTTCAAGGAACTTGAAAATGGGTTCAGAACATGGTTGGCCAAGCAGTCTCTCCCCGTTGAGGCCGCTGTTGTCACCGCCACCAGCGCCGCACAGGGCGCTGCTATTGGTGGCTTTATGGGCGTTCTCACCAACGACGTTTCTTCGTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCCTCTTTCAAGCAAGCTCAGGTCCTATTTTGGTTCCCCCTATTCGTTGTTTGATTTTATAATTTTTTCCTGATTGAAATGTGAGAACTGTCTTATTTGTTGAAATTCTGTAGTTTTATGAACAAAAGTGGAATTTGGGGGAGATGATTCTTGTAGTTTTCTTATGAATTGCAGGCTCTTGCTGGAGGTCCCTTGGTGCAAGCTCGCAACTTCGCCGTGATGACCGGTGTTAATGCAGGCATATCTTCTGTTATGAAGAGATTGAGAGGCAAGGAGGATGTTCAGTCAAGGTAAGGTTTTACGAAGTCTCCGCGTTTCCTTTTCCTTGTTGATTATTTATAAGGGTGTGGAAACCTCTCTCTAGCAAACGTGTTTTAGAAACCTTGAGGGGAAGCACAAAGAGAACAATATCTCTAGTGGTGAGCTTGGGCCGTTAGAAATGATATTAGAGGTAGACACTGGGCGATGTGCTAACATGGAGGTTGAGCCCCAAAGGGAGTGGACAAGGACGCTGGGCCCCGAAGGGAATGGGTTAGGGTGTCCAACATTGATTGGAGAAGGGAATGAGTGCTTGCAAGAACGTTGGGCCCCAAAGGGGATGAGTTAGGGTGTCCAACATTGATTGGAGAAGGGAATGAGTGCTTGGAAGAACGCTGGACCTTGAAGGAGGTGGATTGTGAGATCCCACATCGGTTGGGGAGGAGAATGAAACATTCTTCATATGGGTGTGGAAATCTCTCCCTAGCAGATGCGTTTTAAGAACCTTGAGGGGAAACCCAAAAGGGAAAGCCGAAAGAGAACAATATCTACTAGCGGTGAACTTGGGCTGTTATAAGTGGTATTAGAGATAGACACCGGACGATGAGCCAGCGAGGAGGCTGAACCCCAAAGGGGGTGCACACCTAGTGTGCCAGCAAGGACAGTCCCTCAGATTTCAACTCATTTTCTTCGTGTTAAAGATTCAGATTTGACATTTGAGAATGGGTTGGGAGAGTTTCATTTGGTGAGTTGATTATGGTTTCTAGACTCTTGGATCTCAAGGGTTTTTAAAATCTTAATAGCGTGTTTGAAGGCTTGGATCGTGTTGTTTGGGATTATTGGTGTAACGACCTATGCCCAAGATTTGGAATTTGGGCACTTGATAGCCTCGACATTTCCTTGCATCCCCTGCGACGTGGTCATGTTACTTCTCGCTTCTAAGAGTGAAGATGCTCCCTACAGACCAACATGAGTCCTTCCAAAATCCTTTATCTTCACTAATATGCACCCAACATAGAATTTCTCCAAGCAAAACACACTTAACCATAAAGTTCCTACGATAGAGCTACAAAAAAGGAAGGTGCACCATGTTGGTATAGATAGTAATGTTCATTTCCTTTAAGCCTTTTTTAGTCATTCTATCCTCAGGATTCCTCTCGTTCGGATTTGGTTTCAGTTCATTCATGTACCCCTTCTTTTACTCAAGTGTCACATGCCCACCAGCTTTCGCCTTGGTTCGTCCCCGAACCACATCTTACAGGGAGAGGTATCGCTTTGATACCATTTGTAACGACCCATGCCCAAGATTCATATCAAGATTTGAAATCCAGATTCGACACTTGATGACCCCGGCATTTCCCTACGACATGGTTATGGTACTTCCCACTTTTAAGAGTGAAGACTATCCCCTTGTGCTTAGGCTGACTTCCTTGTTACCTTTTGGGGTATGTGATTTGAAATAAACAACAGTGTTTAGGGACGCGGAGAGGTGCTGGGAGTAGGTTTGGTCATAACTGAAGCCTAACGCCTCTGTTTGGGCGTAGGTTCGGTCATAACTGAAGCCTAACGCCTCTGTTTGGGCGTCAGTCTCGAAGGATCTTTATGGTTACCCATTCGGTTTCGTCACGTGGAATTGGAGCCATTTTTTGTATAGCTAGTTTCTTGCCTCCTTCTATTAGTAGCCTATAATAAATATCAGAAGGGCATAGTTCTTGTAGCCAACTAGTTTTAGTTTGTTTCCATGTTGCATATAGTAACCTCTTAGCTCTATTTAGACTGCTCGTTTGTTTCCTGAACTCGACCAATACGATTTTACTTGCTATTCCAGCATGGTGGCTGCTTTTGGATCTGGGGCCATGTTTTCGTTGGTGAGCGGAATGGGAGGCCCGAATCAGGTGGCAAACGCCGTCACCTCGGGTCTTTTTTTCTCGCTCGTTCAAGGTGGACTCTTCAAGGTATGCATCAATAACAACTGTTCTATTATTCTGATAAATTTCAAGCATTTCAAGCTCGTCCTCGGCTGTTCCTTTGTTCTTATACCAAAATTTGGAACTTGTTTAAGAATCAATGGTGTTTTTCAGTTAGGCGAAAAGTATTCTAAGCCACCTGCGGAAGACGTGTTCTACGCTAAAACCCGAAGCATGTTGAGTAACCTTGGCCTTGCTAGCTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATAGCACATTGCCTCTGCTCACTGATAGGCATGTATATTGAATTCATGTTTTCATACTTATGGTTATAATCAATGCATTGGCTAAGTATGTATACCCTTCTGCTTTGACGTGTGCCAGTGCGCTTAGAGACGTTAAGATCCCCCCGGGACCGAGGCTTTTGATTCTTGATCACATTCAGAGGTTTTAATCGAGCTCTATAACAAAGTTCTTGTTGCTTCCATTGTTCTATGTCGTCTCGTTTATGGCTAACTTTTGATTTCAGGAACGCCGAGCTACGAGAGAGATGAAGCGGGTTGAGTGAGCAGCTTGTCCCAAGAACTCTTTGTAGGTGAACTTGAGGAGGTAGGGAAGTGGTTAGTTCATCTTGAATAGGAAGAATATGTTTGATAAATAGGACGTTTTTGTCGTTTGAATTTGCACCAAATGCACCTTTTGATTTGATTGTTGTGGATGACTGAACCATGGCTTTGTTTATTAATGAATGATGGAACAACTTGGTTTGGTTTGGTTGGCATATTCACTAAAAATTTGTATTGTTAAAAATCACGTTGTGCCTACAAGACAAAGAGAGAGGTGAATGTGGGTGTGGTGCTAAACCACCATAACTCCGACCATCGACTGACTCGTATGAGATCTGTCATATTGGCCGACCTTCAAGGGGTCAAGAGGTCAGTGATTTGAACTTTTGGTGGTTGGGACTCATCTTTGGTCAACACTCACGGTGTTTGACACTATCAAGTTCGATTAATCTTTGGATTTGTTTTTTTAGTCTTTGGTCAGTCTCAAGAAGTCTCATCTTTGGTTAATGCTCGAGGTGGTTGGCACTATCGCACTATCGAGTTCACTATCGAGTTCGACTAACCTTTGGATTTGTTTCTAGG TCAATTTTCAGCGAAACTAAACTGTCGCCGGACGATAGAGGAGGCAACGGAGAAGAAATCAAGGCTCCAATTGGCTTATCATTGATGGAGCAGGGGAAGCAGGGAGTGGTAGTTAAATTGAGCCCTCCACAGAACCCATTGGAGCAGGTTCAGGCTCGTTTCAAGGAACTTGAAAATGGGTTCAGAACATGGTTGGCCAAGCAGTCTCTCCCCGTTGAGGCCGCTGTTGTCACCGCCACCAGCGCCGCACAGGGCGCTGCTATTGGTGGCTTTATGGGCGTTCTCACCAACGACGTTTCTTCGTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCCTCTTTCAAGCAAGCTCAGGCTCTTGCTGGAGGTCCCTTGGTGCAAGCTCGCAACTTCGCCGTGATGACCGGTGTTAATGCAGGCATATCTTCTACTGCTCGTTTGTTTCCTGAACTCGACCAATACGATTTTACTTGCTATTCCAGCATGGTGGCTGCTTTTGGATCTGGGGCCATGTTTTCGTTGGTGAGCGGAATGGGAGGCCCGAATCAGGTGGCAAACGCCGTCACCTCGGGTCTTTTTTTCTCGCTCGTTCAAGGTGGACTCTTCAAGTTAGGCGAAAAGTATTCTAAGCCACCTGCGGAAGACGTGTTCTACGCTAAAACCCGAAGCATGTTGAGTAACCTTGGCCTTGCTAGCTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATAGCACATTGCCTCTGCTCACTGATAGGCATGAACGCCGAGCTACGAGAGAGATGAAGCGGGTTGAGTGAGCAGCTTGTCCCAAGAACTCTTTGTAGGTGAACTTGAGGAGGTAGGGAAGTGGTTAGTTCATCTTGAATAGGAAGAATATGTTTGATAAATAGGACGTTTTTGTCGTTTGAATTTGCACCAAATGCACCTTTTGATTTGATTGTTGTGGATGACTGAACCATGGCTTTGTTTATTAATGAATGATGGAACAACTTGGTTTGGTTTGGTTGGCATATTCACTAAAAATTTGTATTGTTAAAAATCACGTTGTGCCTACAAGACAAAGAGAGAGGTGAATGTGGGTGTGGTGCTAAACCACCATAACTCCGACCATCGACTGACTCGTATGAGATCTGTCATATTGGCCGACCTTCAAGGGGTCAAGAGGTCAGTGATTTGAACTTTTGGTGGTTGGGACTCATCTTTGGTCAACACTCACGGTGTTTGACACTATCAAGTTCGATTAATCTTTGGATTTGTTTTTTTAGTCTTTGGTCAGTCTCAAGAAGTCTCATCTTTGGTTAATGCTCGAGGTGGTTGGCACTATCGCACTATCGAGTTCACTATCGAGTTCGACTAACCTTTGGATTTGTTTCTAGG ATGGAGCAGGGGAAGCAGGGAGTGGTAGTTAAATTGAGCCCTCCACAGAACCCATTGGAGCAGGTTCAGGCTCGTTTCAAGGAACTTGAAAATGGGTTCAGAACATGGTTGGCCAAGCAGTCTCTCCCCGTTGAGGCCGCTGTTGTCACCGCCACCAGCGCCGCACAGGGCGCTGCTATTGGTGGCTTTATGGGCGTTCTCACCAACGACGTTTCTTCGTCTCTGCCCACTCCTCAAGCCGGCCTCAACCCTCAAGCCATGGCCTCTTTCAAGCAAGCTCAGGCTCTTGCTGGAGGTCCCTTGGTGCAAGCTCGCAACTTCGCCGTGATGACCGGTGTTAATGCAGGCATATCTTCTACTGCTCGTTTGTTTCCTGAACTCGACCAATACGATTTTACTTGCTATTCCAGCATGGTGGCTGCTTTTGGATCTGGGGCCATGTTTTCGTTGGTGAGCGGAATGGGAGGCCCGAATCAGGTGGCAAACGCCGTCACCTCGGGTCTTTTTTTCTCGCTCGTTCAAGGTGGACTCTTCAAGTTAGGCGAAAAGTATTCTAAGCCACCTGCGGAAGACGTGTTCTACGCTAAAACCCGAAGCATGTTGAGTAACCTTGGCCTTGCTAGCTATGAGAAGAATTTCAAGAAAGGCTTATTGACTGATAGCACATTGCCTCTGCTCACTGATAGGCATGAACGCCGAGCTACGAGAGAGATGAAGCGGGTTGAGTGA MEQGKQGVVVKLSPPQNPLEQVQARFKELENGFRTWLAKQSLPVEAAVVTATSAAQGAAIGGFMGVLTNDVSSSLPTPQAGLNPQAMASFKQAQALAGGPLVQARNFAVMTGVNAGISSTARLFPELDQYDFTCYSSMVAAFGSGAMFSLVSGMGGPNQVANAVTSGLFFSLVQGGLFKLGEKYSKPPAEDVFYAKTRSMLSNLGLASYEKNFKKGLLTDSTLPLLTDRHERRATREMKRVE
BLAST of Carg13987-RA vs. NCBI nr
Match: XP_022957696.1 (uncharacterized protein LOC111459161 [Cucurbita moschata] >XP_023534791.1 uncharacterized protein LOC111796261 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 397.1 bits (1019), Expect = 4.2e-107 Identity = 212/228 (92.98%), Postives = 214/228 (93.86%), Query Frame = 0
BLAST of Carg13987-RA vs. NCBI nr
Match: XP_022996116.1 (uncharacterized protein LOC111491434 [Cucurbita maxima]) HSP 1 Score: 393.3 bits (1009), Expect = 6.1e-106 Identity = 210/228 (92.11%), Postives = 212/228 (92.98%), Query Frame = 0
BLAST of Carg13987-RA vs. NCBI nr
Match: XP_008437651.1 (PREDICTED: uncharacterized protein LOC103482996 [Cucumis melo]) HSP 1 Score: 381.3 bits (978), Expect = 2.4e-102 Identity = 200/228 (87.72%), Postives = 210/228 (92.11%), Query Frame = 0
BLAST of Carg13987-RA vs. NCBI nr
Match: XP_022138076.1 (uncharacterized protein LOC111009335 isoform X2 [Momordica charantia]) HSP 1 Score: 378.3 bits (970), Expect = 2.0e-101 Identity = 197/228 (86.40%), Postives = 212/228 (92.98%), Query Frame = 0
BLAST of Carg13987-RA vs. NCBI nr
Match: XP_022138075.1 (uncharacterized protein LOC111009335 isoform X1 [Momordica charantia]) HSP 1 Score: 378.3 bits (970), Expect = 2.0e-101 Identity = 197/228 (86.40%), Postives = 212/228 (92.98%), Query Frame = 0
BLAST of Carg13987-RA vs. TAIR10
Match: AT5G24650.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) HSP 1 Score: 226.5 bits (576), Expect = 1.8e-59 Identity = 124/221 (56.11%), Postives = 154/221 (69.68%), Query Frame = 0
BLAST of Carg13987-RA vs. TAIR10
Match: AT3G49560.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein) HSP 1 Score: 220.7 bits (561), Expect = 9.8e-58 Identity = 121/213 (56.81%), Postives = 152/213 (71.36%), Query Frame = 0
BLAST of Carg13987-RA vs. Swiss-Prot
Match: sp|Q9FLT9|HP302_ARATH (Chloroplastic import inner membrane translocase subunit HP30-2 OS=Arabidopsis thaliana OX=3702 GN=HP30-2 PE=1 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 3.2e-58 Identity = 124/221 (56.11%), Postives = 154/221 (69.68%), Query Frame = 0
BLAST of Carg13987-RA vs. Swiss-Prot
Match: sp|Q9SCK3|HP301_ARATH (Chloroplastic import inner membrane translocase subunit HP30-1 OS=Arabidopsis thaliana OX=3702 GN=HP30-1 PE=1 SV=1) HSP 1 Score: 220.7 bits (561), Expect = 1.8e-56 Identity = 121/213 (56.81%), Postives = 152/213 (71.36%), Query Frame = 0
BLAST of Carg13987-RA vs. TrEMBL
Match: tr|A0A1S3AV59|A0A1S3AV59_CUCME (uncharacterized protein LOC103482996 OS=Cucumis melo OX=3656 GN=LOC103482996 PE=4 SV=1) HSP 1 Score: 381.3 bits (978), Expect = 1.6e-102 Identity = 200/228 (87.72%), Postives = 210/228 (92.11%), Query Frame = 0
BLAST of Carg13987-RA vs. TrEMBL
Match: tr|A0A0A0KJR1|A0A0A0KJR1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G139080 PE=4 SV=1) HSP 1 Score: 377.5 bits (968), Expect = 2.3e-101 Identity = 198/230 (86.09%), Postives = 208/230 (90.43%), Query Frame = 0
BLAST of Carg13987-RA vs. TrEMBL
Match: tr|A0A251QPV8|A0A251QPV8_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G322200 PE=4 SV=1) HSP 1 Score: 339.0 bits (868), Expect = 9.0e-90 Identity = 182/237 (76.79%), Postives = 202/237 (85.23%), Query Frame = 0
BLAST of Carg13987-RA vs. TrEMBL
Match: tr|A0A2P4MKX8|A0A2P4MKX8_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_67529 PE=4 SV=1) HSP 1 Score: 338.2 bits (866), Expect = 1.5e-89 Identity = 185/233 (79.40%), Postives = 201/233 (86.27%), Query Frame = 0
BLAST of Carg13987-RA vs. TrEMBL
Match: tr|M5XLV4|M5XLV4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G322200 PE=4 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 3.4e-89 Identity = 178/230 (77.39%), Postives = 198/230 (86.09%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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