Carg05730-RA (mRNA) Silver-seed gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAATCGGGTTCTCGTTTTACTGGAAGCAGGGTTCACTGGTCCAGTAGCGCTCTCCATAAGCTCTAGGTTAGCGTCTTCCCTATCCTTTACCACGACGTTTGAGATCGACCCTACTGAAGATTTTGCTTATCGGACCGCCGTGTACTCTCTATTTCACCAATGAGGTTCTTCTTCTAATCTTCATTCTTCATTCTTTCGGTTGGTTTGGAGCTTCATTTCATTTCTTGTGGTGTTTGATGATGATTTTGGGTGCTGAATTATTACAAGTTCTGCTGTAATTTACATCTGTTTCATCTGGTATCGCGTAATTTTGCTCTTTTCTGCTCTAAGTATCGGTTAATGTTCAGTGTGGCATTCTCTTTGATTGGTTGAATGGGTTTAAGCTTTTTTAACTTCGTTCTCTGATTCATATGTTGGACCCTGAAATTGGAATGGTTTATTTTGAAATTTTGATTTCGGGTTGAAAATTTTATCAGAATGAGCTCCGAACGTGAACGAATATGTTCTAATTCCCTTTCCAATTCCAATTAGCCAAACGACCGATCTTTTTTCTCATTGTTTTTCAAAGTAACTTTAGTGTTTGTTGCCCAAATTGAATCTCTCCAACTAACCAAATGGATGCGGGAATGTTTTTGCTCTCCATAATATTTGACACACTGAAATTGGTAGGATATTTAGGCAGCCACAATCGATCCACGGGCTAATTTCATTGTTTAACATATTTTGCATCTATTTAACAGTAGGACACTCTGGAAGCTCTAAAAGAGACTTTAATATCTTCGTTTCTCCATGGCTAAGTAATGGAAAATAATCTAAACAGCATATCAATTCTCTTCATCTATTTGACTGGTGACTAAACTCTGCTAAACCAGAATTTATGGCTGATGGTTGGATTCTTGTAGAGTGGTATTTTCTATTTTATTTTGCTCACTTGCTATGGTTTCTTTTGTTAATCTTATTTAAAGTGTATCTAATTCAGTGATTTTAACAAAATTGTAGCTGCTGATTCTGTGGCTTGGAGAATATAAACATATAGTGGTATTGTGGGGCACTAAGAACAGAGATTTCATATGATGATTTTGTCGGGATTGAGTGGGAAACCCTCGAAATGTTGTCTTCTGAGACCTAGTCCCAGGATTCCACGTGAGCTGGTTTCATCTTTTCCCAATGGGAACTTTAGAGAAAATATTGATTTGCAATATCTCAAAAGGTTCTGCTCACTACTACACGTTAGTGTTCTGATGTGGTCATTCCAATTCATGATTCATTTACCTTGTTGTTTAATGCAGAAGTTGCTGGACGGGTCCTGCTCTTAGAGGCAAAACTCTCCAGATTCGACACACTACTAAGTGTGCATTTGATGCTTCCGGAGATTTTGCAAATGAGTCTGCCGGTAAAGTTCTTACTCCAACTAACAACATCGATTATCTCCACCAAACTAATCCATCTAGGAAGCTCCTAGTCAAACAAAGCTCTGTGTTATTGTACCTAACAGGCAATTAACAATAGGAACAATTTAGACTGACTTTACAACATTAAAGGGATAATGGTTAGATTTTAGAACTTAGGGATCAAAATAGATGTAAAGGGTTATAAATTCATGACCAAAAATTTAATTTGCTGGTTTATTTATTTAATAAACTATTGATCTACTCTCTCTATGGTTCAAAACTTTGATTATTAGGACCTGAAACATGGATTTTTTTTTATCTTAAAATGAGTAAATTTTAAAACTGGGATTATAACATATGATTTTCTACACGATATCGTGATAAATTACTAATAAATTTTATAAATCTATTCGTTCTTATATTGATGATGATGATATTTACTGCAATTGTATTAAGCGAGCACCGCACTCCATTTTGACACTCCATTTTGACACGTAAGATATTTTCCTTCTTGACACTTTTCTAGAATTAGCTTAGCTCATCTCTGAGCTTCCTTCTTGACTCTTTTTGCTAATGCAGCTATATTCCCTCGAATACATGTAAGGGATCCATACAAACGGCTTGGCATAAGTAAGGAAGCATCTGAAGATGAAATTCAAGCTGCCAGAAACTTCCTTATTCATAGATACGCAGGGCACAAAGAAAGTGTCGATGCCATTGAATCAGCTCATGATAAAATTATTATGCAAAAATTTTATGACAGAAAGAACCCAAAAATTGATATCAAGAAAAAGGTCAGGGAAGTGAATCAGTCTCGGGTTGTGCAGGCTATAAGGAATAGGTTCCAAACACCATCTACAAAGTTCATAATCAAGTCATCCATTGCCTTTTTAGTTCTTGGAGTTCTCACCATTCTCTTTCCAACCGAGGAAGGCCCAACCCTTCAGGTTGCTATATCACTCATAGCTACTTTCTATTTCATACATGATCGACTGAAGAGCAAACTCCGAGCTTTCCTTTATGGGTATGTCTAGAACATTCATCTCATTTCCTTTTCGAAATTTATGATAGAACATAAATACTAACATATAGAACAGAATTTAATGGTATCTGATAAGATAACTGGGTTTGATTCTATGAGTTTTTCAATGGTACAGGGCTGGAGCTTTCATATTCTCATGGCTGTTGGGAACCTTTTTGATGGTATCTGTGATCCCTCCTGTAATAAAAGGTTTGAGAGGCTTTGAAGTCACTACTTCATTGATAACCTATATCTTACTCTGGGTTTCATCTACATATTTAAAGTAGCAAAGAAAAGGTTTTCTTCTATTGTGAGATTCAAATTTTGCTGCGGATGAGGTTCTGATTCACAGTGTTCTGCTTCCCTGCCCCTTCGGTTGATTAATGGAGAGGATATGTTGAGATTGAAGGGTTCTTTGTTTTAGAGTTGAAAAGGATGTAAACTATTACAGATGGAAACTGTAGGTTAGCTGTTTGTTATTATCTGTATTTCATCTTTTGTTGCAATGATAATCTTTCTTGTGCAGTTTTTTG AAATCGGGTTCTCGTTTTACTGGAAGCAGGGTTCACTGGTCCAGTAGCGCTCTCCATAAGCTCTAGGTTAGCGTCTTCCCTATCCTTTACCACGACGTTTGAGATCGACCCTACTGAAGATTTTGCTTATCGGACCGCCGTGTACTCTCTATTTCACCAATGAGCTGCTGATTCTGTGGCTTGGAGAATATAAACATATAGTGGTATTGTGGGGCACTAAGAACAGAGATTTCATATGATGATTTTGTCGGGATTGAGTGGGAAACCCTCGAAATGTTGTCTTCTGAGACCTAGTCCCAGGATTCCACGTGAGCTGGTTTCATCTTTTCCCAATGGGAACTTTAGAGAAAATATTGATTTGCAATATCTCAAAAGAAGTTGCTGGACGGGTCCTGCTCTTAGAGGCAAAACTCTCCAGATTCGACACACTACTAAGTGTGCATTTGATGCTTCCGGAGATTTTGCAAATGAGTCTGCCGCTATATTCCCTCGAATACATGTAAGGGATCCATACAAACGGCTTGGCATAAGTAAGGAAGCATCTGAAGATGAAATTCAAGCTGCCAGAAACTTCCTTATTCATAGATACGCAGGGCACAAAGAAAGTGTCGATGCCATTGAATCAGCTCATGATAAAATTATTATGCAAAAATTTTATGACAGAAAGAACCCAAAAATTGATATCAAGAAAAAGGTCAGGGAAGTGAATCAGTCTCGGGTTGTGCAGGCTATAAGGAATAGGTTCCAAACACCATCTACAAAGTTCATAATCAAGTCATCCATTGCCTTTTTAGTTCTTGGAGTTCTCACCATTCTCTTTCCAACCGAGGAAGGCCCAACCCTTCAGGTTGCTATATCACTCATAGCTACTTTCTATTTCATACATGATCGACTGAAGAGCAAACTCCGAGCTTTCCTTTATGGGGCTGGAGCTTTCATATTCTCATGGCTGTTGGGAACCTTTTTGATGGTATCTGTGATCCCTCCTGTAATAAAAGGTTTGAGAGGCTTTGAAGTCACTACTTCATTGATAACCTATATCTTACTCTGGGTTTCATCTACATATTTAAAGTAGCAAAGAAAAGGTTTTCTTCTATTGTGAGATTCAAATTTTGCTGCGGATGAGGTTCTGATTCACAGTGTTCTGCTTCCCTGCCCCTTCGGTTGATTAATGGAGAGGATATGTTGAGATTGAAGGGTTCTTTGTTTTAGAGTTGAAAAGGATGTAAACTATTACAGATGGAAACTGTAGGTTAGCTGTTTGTTATTATCTGTATTTCATCTTTTGTTGCAATGATAATCTTTCTTGTGCAGTTTTTTG ATGATGATTTTGTCGGGATTGAGTGGGAAACCCTCGAAATGTTGTCTTCTGAGACCTAGTCCCAGGATTCCACGTGAGCTGGTTTCATCTTTTCCCAATGGGAACTTTAGAGAAAATATTGATTTGCAATATCTCAAAAGAAGTTGCTGGACGGGTCCTGCTCTTAGAGGCAAAACTCTCCAGATTCGACACACTACTAAGTGTGCATTTGATGCTTCCGGAGATTTTGCAAATGAGTCTGCCGCTATATTCCCTCGAATACATGTAAGGGATCCATACAAACGGCTTGGCATAAGTAAGGAAGCATCTGAAGATGAAATTCAAGCTGCCAGAAACTTCCTTATTCATAGATACGCAGGGCACAAAGAAAGTGTCGATGCCATTGAATCAGCTCATGATAAAATTATTATGCAAAAATTTTATGACAGAAAGAACCCAAAAATTGATATCAAGAAAAAGGTCAGGGAAGTGAATCAGTCTCGGGTTGTGCAGGCTATAAGGAATAGGTTCCAAACACCATCTACAAAGTTCATAATCAAGTCATCCATTGCCTTTTTAGTTCTTGGAGTTCTCACCATTCTCTTTCCAACCGAGGAAGGCCCAACCCTTCAGGTTGCTATATCACTCATAGCTACTTTCTATTTCATACATGATCGACTGAAGAGCAAACTCCGAGCTTTCCTTTATGGGGCTGGAGCTTTCATATTCTCATGGCTGTTGGGAACCTTTTTGATGGTATCTGTGATCCCTCCTGTAATAAAAGGTTTGAGAGGCTTTGAAGTCACTACTTCATTGATAACCTATATCTTACTCTGGGTTTCATCTACATATTTAAAGTAG MMILSGLSGKPSKCCLLRPSPRIPRELVSSFPNGNFRENIDLQYLKRSCWTGPALRGKTLQIRHTTKCAFDASGDFANESAAIFPRIHVRDPYKRLGISKEASEDEIQAARNFLIHRYAGHKESVDAIESAHDKIIMQKFYDRKNPKIDIKKKVREVNQSRVVQAIRNRFQTPSTKFIIKSSIAFLVLGVLTILFPTEEGPTLQVAISLIATFYFIHDRLKSKLRAFLYGAGAFIFSWLLGTFLMVSVIPPVIKGLRGFEVTTSLITYILLWVSSTYLK
BLAST of Carg05730-RA vs. NCBI nr
Match: XP_022929414.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 [Cucurbita moschata] >XP_023553156.1 protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 551.2 bits (1419), Expect = 2.0e-153 Identity = 279/279 (100.00%), Postives = 279/279 (100.00%), Query Frame = 0
BLAST of Carg05730-RA vs. NCBI nr
Match: XP_022929415.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 [Cucurbita moschata] >XP_023553158.1 protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 544.7 bits (1402), Expect = 1.9e-151 Identity = 278/279 (99.64%), Postives = 278/279 (99.64%), Query Frame = 0
BLAST of Carg05730-RA vs. NCBI nr
Match: XP_022984972.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X1 [Cucurbita maxima]) HSP 1 Score: 540.8 bits (1392), Expect = 2.7e-150 Identity = 273/278 (98.20%), Postives = 275/278 (98.92%), Query Frame = 0
BLAST of Carg05730-RA vs. NCBI nr
Match: XP_022984973.1 (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic-like isoform X2 [Cucurbita maxima]) HSP 1 Score: 534.3 bits (1375), Expect = 2.5e-148 Identity = 272/278 (97.84%), Postives = 274/278 (98.56%), Query Frame = 0
BLAST of Carg05730-RA vs. NCBI nr
Match: XP_004146515.1 (PREDICTED: uncharacterized protein LOC101208655 isoform X1 [Cucumis sativus] >KGN53323.1 hypothetical protein Csa_4G047350 [Cucumis sativus]) HSP 1 Score: 523.1 bits (1346), Expect = 5.9e-145 Identity = 268/279 (96.06%), Postives = 273/279 (97.85%), Query Frame = 0
BLAST of Carg05730-RA vs. TAIR10
Match: AT3G51140.1 (Protein of unknown function (DUF3353)) HSP 1 Score: 311.2 bits (796), Expect = 6.3e-85 Identity = 155/214 (72.43%), Postives = 184/214 (85.98%), Query Frame = 0
BLAST of Carg05730-RA vs. TAIR10
Match: AT5G23040.1 (Protein of unknown function (DUF3353)) HSP 1 Score: 142.9 bits (359), Expect = 3.0e-34 Identity = 84/217 (38.71%), Postives = 130/217 (59.91%), Query Frame = 0
BLAST of Carg05730-RA vs. Swiss-Prot
Match: sp|Q9FN50|CPP1_ARATH (Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPP1 PE=1 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 5.4e-33 Identity = 84/217 (38.71%), Postives = 130/217 (59.91%), Query Frame = 0
BLAST of Carg05730-RA vs. Swiss-Prot
Match: sp|G5DBJ0|CPP1_NICBE (Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CPP1 PE=1 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 1.0e-31 Identity = 77/198 (38.89%), Postives = 125/198 (63.13%), Query Frame = 0
BLAST of Carg05730-RA vs. TrEMBL
Match: tr|A0A0A0KUU1|A0A0A0KUU1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G047350 PE=4 SV=1) HSP 1 Score: 523.1 bits (1346), Expect = 3.9e-145 Identity = 268/279 (96.06%), Postives = 273/279 (97.85%), Query Frame = 0
BLAST of Carg05730-RA vs. TrEMBL
Match: tr|A0A1S3BTS0|A0A1S3BTS0_CUCME (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493178 PE=4 SV=1) HSP 1 Score: 521.5 bits (1342), Expect = 1.1e-144 Identity = 266/279 (95.34%), Postives = 274/279 (98.21%), Query Frame = 0
BLAST of Carg05730-RA vs. TrEMBL
Match: tr|A0A1S3BU43|A0A1S3BU43_CUCME (protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493178 PE=4 SV=1) HSP 1 Score: 515.0 bits (1325), Expect = 1.1e-142 Identity = 265/279 (94.98%), Postives = 273/279 (97.85%), Query Frame = 0
BLAST of Carg05730-RA vs. TrEMBL
Match: tr|A0A061DFU1|A0A061DFU1_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_000248 PE=4 SV=1) HSP 1 Score: 388.3 bits (996), Expect = 1.5e-104 Identity = 212/286 (74.13%), Postives = 238/286 (83.22%), Query Frame = 0
BLAST of Carg05730-RA vs. TrEMBL
Match: tr|V4UHG9|V4UHG9_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10026225mg PE=4 SV=1) HSP 1 Score: 384.4 bits (986), Expect = 2.2e-103 Identity = 203/283 (71.73%), Postives = 235/283 (83.04%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
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