CSPI03G23000.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G23000.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	RNA-binding family protein
Location	Chr3 : 19762731 .. 19765769 (+)
Sequence length	525

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCGTTAAGAAGAAGAGTCCTCCTTCCTCAAAACGAAAAAGAAAAAAAATCTGTTTTTCCTCGCCTCTTCCAGAAAGGGTTTAGTACCTTAAACCCCAATCCTATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACACGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCACCATTACTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCCAGTACTAACCTTTTCGTTTCCGGTAAATCGTTCTTTCTTAATCTATCTGCCTTGCGTTTATTTACTTTAACAATCATGTATTTGCGTTATGTATATTGCTCCCTTTCTGTTCTGAAACTGCTAACGTTATTTTGATTTATGGTTTCATTCTTGCCAATTTTTTTTGGAGTCTGGAATTTCATTTTTCCTGTTCTTCTTTTGGTCCTATTTTAGCTGTCTTAGTAATTGAGAAATGCTTAGTTACCTTTTTTTTTTAATAAATATTTTCTAACCTTCGATTGTCAATTTTATGGTATCTTTTTAGTTAGTGTTGAGATATCTTTTTTTATTTTTTATGCCTCTTCTTGTTCTTTGCCTTTAATTTGCTTCACCTCTCGGTTTTGAATTGTTGAGATGCATACGTATATTTCTAGATGGGGAAGTTTAGTAATTGGTGGAATAGTAAGTATTGTGAGTACAATCTATGCTTGACTGGACCTAATGAGGTGGCTATCCATTCTCTTTGGATGTTGGCCTCCTCTACGTTTATCTTTTTCAATGATCGATTCTTGGAAGCTGGAATTGAAATTTGGCTAATGTGTTTGTTGAGCTGTGTTTCTGTTTCTTTTCAAGTAGAGGAATTGTTCTGTCTTTTAATACAGAATTTTCAAGTTTTATTGTGTTTATGAAATTAATGAACTGTTTGTGAAGCACGTAATTGTTGATGTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACCACTGAAAAACTTCATGAAGCCTTTGCGAAGTTTGGAGAAGTTGCTCATGGTCTGTCCATTCGCATTGCAAGTTTGATTTGTGCTTAGACCTGAATTTTTTCCATCTTTTAACCTGTTGTTTTCTGTTCTGTTTGTAGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCTGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTTCCAGTTTTCTCATTTGAGACGTTGAAGTTTATTTGGTGTGTATGTAGTGTTAATCCACATTTACATAAGATCCCTGGATCTTGCATTCAATGTTTTTCGCATGTGTTAGCATAGAGGCTAAGGTCGTTGACTACCCTTCTAATAGACAACTAAGAAATGAGAAAGAAAATGAATAAGAATATGACTTCAATGTGTTAATTGGCGTATCACAGAATAAATATAAGATTCCTGAATATGGTGTGTGGTGTTATGTTATCCACATATGCGTACAAGATAGTATTCTAAAGAATTTGATTGGCAACATAGAGAACATATCCTTACAGCACTCAGCTGTTGATTATGATTCATGCTTTGCATATTTTGGATCTTATGGTACCTGGCTCGGCTGATAGATCTGCTGGTTACATGGGAGTGCAGTTTCTCCTTTATTCTCATGTTCAATGGTGTTTGCTTTATGTAGTCCTTTCAGACAATAATTATTTTTGGTAATTCATTGATTTATTTGTAGGATTTTCTGATATAATTTGAATCCTTTCATTTGAGCAACATGGTGGTGAGAGTATTTTTTTTTTCATTACCTTTTTCTTGGTGGGGCATTGAGCATTTAGTCGGGTTCATTTTTTCTTTTGCTGTTGCATTGTAATGGATGTTTAAGTTTAACCGCTTAAACTGGCCTGGTTAGTGGTCACTCACGAATATAAGAAAATAAACACGTGACTTTACAATGTTGAAGAAAAACATTAACTATTGGACTTTAACAATTCTTTGAATCTTGTAAAGGGTACCACTTGGAAACATTATTGTTACTATTATCATCAAGTTTTAAAATGATTGCCAATATGTGGCTAAATGGTTGGTTGGTGAATCTTTTATAGAAAGTACAATCTTGACAATGCAAAATGGTTGTATTGAACAAACCGATCTAGGTTTCTTTTAAATCGATTTTGTCAAACTTTCCTAGAACTTCCCTTGGTTTGCTTCATTGTCATTTTTGACATTTTAGTAGAATACTCCCATTATGAGCCTCGTTCAATTGATTTGATTCCATGTGTCTTACCTCTCTGATCCCCAATTAAAACATTTACTCTGATAAACTTTACAAATTAGAATGCCCGAAAATAAGATTTAAGAAATTGGGTTGATGATTGCTTTTGAACACGTGTTGAAATTTGATTACTTATAATTGAATGATGATGAGTCTCTTTTTGTTTTCCCTCTTAATGTTATCCAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCTGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAACGATGAAGGATGCTTCCATATCCATTGAACTCTCTTGATCTGCAAAATGGCACTTAACTTTATATACATGATTTAGGTTATTTCTTCATTGGAGGTTCGTTGTTCTCTTCCGTTGCTGATAACTTTTTTGTTCTGCGGAACTGTAGATTAGCCGCAGGTATTGAGTTGAGAATATCTGAATTGAGACAGTAGCATTTTTACAGGTACTACATGTATGATCTACTTTTCAACATATTTAGTCAAAACTATTTTATTTATATATATGTTTCGCCAATAAACATACTTTGCATTGCGTATTTGTTACTGATAAGCTTAGAGTTTGTTCTTGTCGTGTATGCTTTTGGATTAATTTCTAGTTAACCACACATTGACC

mRNA sequence

ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACACGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCACCATTACTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCCAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACCACTGAAAAACTTCATGAAGCCTTTGCGAAGTTTGGAGAAGTTGCTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCTGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCTGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA

Coding sequence (CDS)

ATGGCTCTCAGATCGGCGGCGGCGTCGGCTCCTCGGAGTTTGAGGAAACTCATTACACGTACCTCAACTCGTACTCTACCGATAATCTCCCAGGCTATTCATGATTGGGAGAAACCGGAGCCCAGCACCATTACTTTCCTTTCTGGCCGCCTGTTCTCCAGCGCTTCTACTTCTAGTTTCATTCCTCCGCCGCTCCCTCCCTCGGCTCAGCAGCGTGAGGTGGCTGAGCCCAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACCACTGAAAAACTTCATGAAGCCTTTGCGAAGTTTGGAGAAGTTGCTCATGCAAGAGTTGTAACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCTGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTGGATGGTTGGGTTATATTTGCTGAGTATGCAAGGCCAAGACCACCTCCTGAGAACAACAATGGTTTTGCCCCATATGGCCGTCGAGATTAA

Homology

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BLAST of CSPI03G23000.1 vs. Swiss-Prot
Match: RBG3_ARATH (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG3 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.5e-13
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVK 126
           PS  Q      S+ LF+ G++     + L EAF K+GEV   RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

[Close]

BLAST of CSPI03G23000.1 vs. Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.2e-12
Identity = 39/97 (40.21%), Postives = 54/97 (55.67%), Query Frame = 1


Query: 75  AEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAA 134
           A+     FV GL+  T  E L +AFA FG+V  ++V+TDR TG S+GFGFV +++ +   
Sbjct: 4   ADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63

Query: 135 KGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYG 172
             IE M+GK LDG  I    A+ R       G+   G
Sbjct: 64  DAIENMNGKELDGRNITVNQAQSRGGGGGGGGYGGGG 100

[Close]

BLAST of CSPI03G23000.1 vs. Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVK 126
           PS+Q+++ +    ++FV  LS   TTE +  AFA FG+++ ARVV D  TG SKG+GFV 
Sbjct: 103 PSSQKKDTSN-HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 162

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP 161
           +    DA   I  M G++L G  I   +A  +PP
Sbjct: 163 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 195

[Close]

BLAST of CSPI03G23000.1 vs. Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 7.2e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 1


Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVK 126
           PS+Q+++ +    ++FV  LS   TTE +  AFA FG+++ ARVV D  TG SKG+GFV 
Sbjct: 86  PSSQKKDTSN-HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 145

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP 161
           +    DA   I  M G++L G  I   +A  +PP
Sbjct: 146 FYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPP 178

[Close]

BLAST of CSPI03G23000.1 vs. Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3)

HSP 1 Score: 71.6 bits (174), Expect = 9.4e-12
Identity = 46/106 (43.40%), Postives = 61/106 (57.55%), Query Frame = 1


Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVK 126
           P    R  +  S  LFV GLS+ TT E L EAF   G V +AR+VTDR TG SKGFGFV 
Sbjct: 491 PQGGGRGGSAQSKTLFVRGLSEDTTEETLKEAFD--GSV-NARIVTDRDTGASKGFGFVD 550

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR 173
           ++T EDA    E M+   +DG  +  ++A+P+   +   G   +GR
Sbjct: 551 FSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQ-RGGRGGFGR 592

[Close]

BLAST of CSPI03G23000.1 vs. TrEMBL
Match: A0A0A0LD10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.2e-92
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD 175
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD 174

[Close]

BLAST of CSPI03G23000.1 vs. TrEMBL
Match: W9QQG2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021140 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-46
Identity = 99/128 (77.34%), Postives = 108/128 (84.38%), Query Frame = 1


Query: 50  RLFSSASTSSFIPPPLPPSAQQ--REVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAH 109
           RLFS+ STS FIPPP+  +AQ   R  A+PS NLFVSGLSKRTTTEKLHEAF++FGEV H
Sbjct: 16  RLFSTTSTSPFIPPPIHAAAQAPARPQADPSANLFVSGLSKRTTTEKLHEAFSQFGEVEH 75

Query: 110 ARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP--PENNN 169
           ARVVTDRV+G+SKGFGFVKY TLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP     N+
Sbjct: 76  ARVVTDRVSGFSKGFGFVKYTTLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPLGQPGNS 135

Query: 170 GFAPYGRR 174
              PYGRR
Sbjct: 136 MTPPYGRR 143

[Close]

BLAST of CSPI03G23000.1 vs. TrEMBL
Match: M5X2X0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013115mg PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.0e-44
Identity = 96/125 (76.80%), Postives = 104/125 (83.20%), Query Frame = 1


Query: 50  RLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHAR 109
           RLFS+    SFIPP   P+ Q RE AEPSTNLFVSGLSKRTT+EKL EAF++FGEV HAR
Sbjct: 18  RLFST----SFIPPMNSPAPQAREKAEPSTNLFVSGLSKRTTSEKLQEAFSQFGEVVHAR 77

Query: 110 VVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR--PPPENNNGF 169
           VVTDRV+GYSKGFGFV+YATLEDA KGI+GMDGKFLDGWVIFAEYARPR  PPP  NN  
Sbjct: 78  VVTDRVSGYSKGFGFVRYATLEDAGKGIDGMDGKFLDGWVIFAEYARPRQPPPPPENNMS 137

Query: 170 APYGR 173
            PY R
Sbjct: 138 PPYSR 138

[Close]

BLAST of CSPI03G23000.1 vs. TrEMBL
Match: A5B311_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g04770 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 1.7e-44
Identity = 93/124 (75.00%), Postives = 105/124 (84.68%), Query Frame = 1


Query: 50  RLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHAR 109
           RLFS   TS+FIPPP+  +      AEPSTNLFVSGLSKRTT+E LHEAF+KFG+V +AR
Sbjct: 15  RLFS---TSTFIPPPITAATPATPPAEPSTNLFVSGLSKRTTSEGLHEAFSKFGQVVNAR 74

Query: 110 VVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE-NNNGFA 169
           VVTDRV+GYSKGFGFV+Y +LEDAA+GI+GMDGKFLDGWVIFAEYARPRPPP   NNG  
Sbjct: 75  VVTDRVSGYSKGFGFVRYVSLEDAAEGIKGMDGKFLDGWVIFAEYARPRPPPSPQNNGAP 134

Query: 170 PYGR 173
           PYGR
Sbjct: 135 PYGR 135

[Close]

BLAST of CSPI03G23000.1 vs. TrEMBL
Match: A0A151R8E6_CAJCA (Nucleolin OS=Cajanus cajan GN=KK1_039940 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.5e-44
Identity = 95/132 (71.97%), Postives = 105/132 (79.55%), Query Frame = 1


Query: 46  FLSGRLFSSASTSSFIPPPLPPS----AQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAK 105
           F +    SS+ +  FIPPP  PS    A  R  AEP+TNLFVSGLSKRTTT++L E FAK
Sbjct: 17  FCTNSASSSSPSFPFIPPP--PSGAGPAPARPTAEPNTNLFVSGLSKRTTTDRLREEFAK 76

Query: 106 FGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP 165
           FGEV HARVVTDRV+GYSKGFGFV+YAT+EDAAKGIEGMDGKFLDGWVIFAEYARPRPPP
Sbjct: 77  FGEVVHARVVTDRVSGYSKGFGFVQYATIEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP 136

Query: 166 ENNNGFAPYGRR 174
            N N    YGR+
Sbjct: 137 GNVNNAPQYGRQ 146

[Close]

BLAST of CSPI03G23000.1 vs. TAIR10
Match: AT5G54580.1 (AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 165.6 bits (418), Expect = 2.7e-41
Identity = 94/151 (62.25%), Postives = 107/151 (70.86%), Query Frame = 1


Query: 26  LPIISQAIHDWEKPEPSTITFLSGRLF-SSASTSSFIPPPLPPSAQQREVAEPSTNLFVS 85
           LP IS+A+      E ++      RLF S+AS  SF+ P        R  AEPSTNLFVS
Sbjct: 7   LPAISRAV-----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVS 66

Query: 86  GLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKF 145
           GLSKRTT+E L  AFA+FGEVA A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKF
Sbjct: 67  GLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKF 126

Query: 146 LDGWVIFAEYARPRP-----PPENNNGFAPY 171
           LDGWVIFAEYARPR       P+NN    PY
Sbjct: 127 LDGWVIFAEYARPREQSQSYQPQNNMSRPPY 152

[Close]

BLAST of CSPI03G23000.1 vs. TAIR10
Match: AT2G37510.1 (AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-25
Identity = 54/83 (65.06%), Postives = 63/83 (75.90%), Query Frame = 1


Query: 78  STNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           S  LFVSGLS+ TT EKL +AFA FG++  ARV+TDR +G SKGFGFV YAT+EDA K  
Sbjct: 33  SPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAK 92

Query: 138 EGMDGKFLDGWVIFAEYARPRPP 161
             M+ KFLDGWVIF + ARPR P
Sbjct: 93  AEMNAKFLDGWVIFVDPARPREP 115

[Close]

BLAST of CSPI03G23000.1 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-19
Identity = 53/113 (46.90%), Postives = 66/113 (58.41%), Query Frame = 1


Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 AHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
            H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of CSPI03G23000.1 vs. TAIR10
Match: AT5G06210.1 (AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 77.8 bits (190), Expect = 7.4e-15
Identity = 41/98 (41.84%), Postives = 62/98 (63.27%), Query Frame = 1


Query: 70  QQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVKYAT 129
           Q+R VA   + LF+ GLS  TT + L EAF+K G+V  A++V DRV+  SKGFGFV +A+
Sbjct: 28  QRRGVA---SKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS 87

Query: 130 LEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGF 168
            ++A K +   +G+ L+G  IF +YA+ +       G+
Sbjct: 88  ADEAQKALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGY 122

[Close]

BLAST of CSPI03G23000.1 vs. TAIR10
Match: AT5G61030.1 (AT5G61030.1 glycine-rich RNA-binding protein 3)

HSP 1 Score: 75.1 bits (183), Expect = 4.8e-14
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1


Query: 67  PSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSKGFGFVK 126
           PS  Q      S+ LF+ G++     + L EAF K+GEV   RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           + + E A+  I+ +DG+ L G V+   YA  R
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDR 119

[Close]

BLAST of CSPI03G23000.1 vs. NCBI nr
Match: gi|449468518|ref|XP_004151968.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 3.2e-92
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD 175
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRRD 174

[Close]

BLAST of CSPI03G23000.1 vs. NCBI nr
Match: gi|659109165|ref|XP_008454580.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 1.3e-85
Identity = 162/173 (93.64%), Postives = 167/173 (96.53%), Query Frame = 1


Query: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60
           MALRSAAASAPRSLR+LIT TSTRTLPIISQAIHDWEKP PST +FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120
           +PPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAF+KFGEV HARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRR 174
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGR+
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRQ 173

[Close]

BLAST of CSPI03G23000.1 vs. NCBI nr
Match: gi|1009110800|ref|XP_015897689.1| (PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 207.6 bits (527), Expect = 1.8e-50
Identity = 103/125 (82.40%), Postives = 109/125 (87.20%), Query Frame = 1


Query: 50  RLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHAR 109
           RLFSS S+ SF+PP  PP+AQ RE  EPSTNLF+SGLSKRTTTEKLHE FAKFGEV HAR
Sbjct: 15  RLFSSISSPSFLPPQTPPAAQAREKPEPSTNLFISGLSKRTTTEKLHEEFAKFGEVVHAR 74

Query: 110 VVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPE--NNNGF 169
           VVTDRV+GYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP    NN  
Sbjct: 75  VVTDRVSGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGQIQNNMT 134

Query: 170 APYGR 173
           + YGR
Sbjct: 135 SSYGR 139

[Close]

BLAST of CSPI03G23000.1 vs. NCBI nr
Match: gi|703083693|ref|XP_010092279.1| (hypothetical protein L484_021140 [Morus notabilis])

HSP 1 Score: 193.7 bits (491), Expect = 2.6e-46
Identity = 99/128 (77.34%), Postives = 108/128 (84.38%), Query Frame = 1


Query: 50  RLFSSASTSSFIPPPLPPSAQQ--REVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAH 109
           RLFS+ STS FIPPP+  +AQ   R  A+PS NLFVSGLSKRTTTEKLHEAF++FGEV H
Sbjct: 16  RLFSTTSTSPFIPPPIHAAAQAPARPQADPSANLFVSGLSKRTTTEKLHEAFSQFGEVEH 75

Query: 110 ARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP--PENNN 169
           ARVVTDRV+G+SKGFGFVKY TLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP     N+
Sbjct: 76  ARVVTDRVSGFSKGFGFVKYTTLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPLGQPGNS 135

Query: 170 GFAPYGRR 174
              PYGRR
Sbjct: 136 MTPPYGRR 143

[Close]

BLAST of CSPI03G23000.1 vs. NCBI nr
Match: gi|658029023|ref|XP_008349953.1| (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Malus domestica])

HSP 1 Score: 190.3 bits (482), Expect = 2.9e-45
Identity = 97/127 (76.38%), Postives = 104/127 (81.89%), Query Frame = 1


Query: 48  SGRLFSSASTSSFIPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAH 107
           S R  S   ++SFIPP    +   RE AEPSTNLFVSGLSKRTTTEKLHEAF++FGEV H
Sbjct: 15  STRGLSRLXSTSFIPPMNSATPSAREQAEPSTNLFVSGLSKRTTTEKLHEAFSQFGEVVH 74

Query: 108 ARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR--PPPENNN 167
           ARVVTDRV+GYSKGFGFVKY TLEDAAKGIEGMDGKFLDGWVIFAEYARPR  PPP  NN
Sbjct: 75  ARVVTDRVSGYSKGFGFVKYXTLEDAAKGIEGMDGKFLDGWVIFAEYARPRQPPPPPQNN 134

Query: 168 GFAPYGR 173
             +PY R
Sbjct: 135 MASPYSR 141

The following BLAST results are available for this feature:

BLAST of CSPI03G23000.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBG3_ARATH	8.5e-13	41.30	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana GN=RBG...	[more]
GRP2_SORBI	4.2e-12	40.21	Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1	[more]
TIAR_MOUSE	7.2e-12	41.49	Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=1 SV=1	[more]
TIAR_HUMAN	7.2e-12	41.49	Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1	[more]
NUCL_XENLA	9.4e-12	43.40	Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3	[more]

BLAST of CSPI03G23000.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD10_CUCSA	2.2e-92	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G403980 PE=4 SV=1	[more]
W9QQG2_9ROSA	1.8e-46	77.34	Uncharacterized protein OS=Morus notabilis GN=L484_021140 PE=4 SV=1	[more]
M5X2X0_PRUPE	1.0e-44	76.80	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013115mg PE=4 SV=1	[more]
A5B311_VITVI	1.7e-44	75.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0014g04770 PE=4 SV=...	[more]
A0A151R8E6_CAJCA	6.5e-44	71.97	Nucleolin OS=Cajanus cajan GN=KK1_039940 PE=4 SV=1	[more]

BLAST of CSPI03G23000.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G54580.1	2.7e-41	62.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	6.0e-25	65.06	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	3.8e-19	46.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	7.4e-15	41.84	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	4.8e-14	41.30	glycine-rich RNA-binding protein 3	[more]

BLAST of CSPI03G23000.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449468518\|ref\|XP_004151968.1\|	3.2e-92	100.00	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis sativus]	[more]
gi\|659109165\|ref\|XP_008454580.1\|	1.3e-85	93.64	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
gi\|1009110800\|ref\|XP_015897689.1\|	1.8e-50	82.40	PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Ziziphus jujuba]	[more]
gi\|703083693\|ref\|XP_010092279.1\|	2.6e-46	77.34	hypothetical protein L484_021140 [Morus notabilis]	[more]
gi\|658029023\|ref\|XP_008349953.1\|	2.9e-45	76.38	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial-like isoform X1 [Ma...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G23000	CSPI03G23000	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G23000.1	CSPI03G23000.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G23000.1.utr5p1	CSPI03G23000.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G23000.1.cds1	CSPI03G23000.1.cds1	CDS
CSPI03G23000.1.cds2	CSPI03G23000.1.cds2	CDS
CSPI03G23000.1.cds3	CSPI03G23000.1.cds3	CDS
CSPI03G23000.1.cds4	CSPI03G23000.1.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G23000.1.utr3p1	CSPI03G23000.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 81..147 score: 1.5
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 80..153 score: 8.9
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 79..157 score: 1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 62..168 score: 4.0
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 60..167 score: 1.88
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 35..41 score: 8.5E-25coord: 76..158 score: 8.5