CSPI03G21620.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAATATGATAGGTTGTGTGTCCCTAGAAACCAAGGCATAAAAGATCAAATTTTAGAGGAAGCATATAGTTCTGCATATGATATTCATTCTGGCAGTACAAAGATGTATAGAACTTTAAAGAAGCACTATTGGTGGCTTGGTATGAAGCGTGAAACTGCAGAATATGTAGTTAAGTGTTTAATCTATCAACAAGTTAAACCTGAATGATAGATAGCAGCAGAAATTTTAAACGTACTTCTAGTGCTGAAATGGAAATGGAAACATGTTACCATGGACTTTTTATTTGGACTTCCTCGCACATCGAGTGGGTTTGATGGCATTTGGGTGATAGTTGACAGACTTACAAAGACAACAAGATTTTGACTAGTGAAGGTCACTTTCACCTTCGATAAGTTGGCCAAATTGTAGATTAGTAAGATTGTAAGTGCGAATGGAGCTCCCGTATCTATTATGTCTAATAGAGATTCCAAGTTTACCCTAAAGTTTTGTCTGAGTTTGCAACAAGTAATGGGCACCAATTTACATTTCAGTACCAGATTTCGTCCTCTGATATATTGTCAATCATAAAGAACCAAGACCTTGGAAGATATGCTTCAAGCTTGTGA ATGAAATATGATAGGTTGTGTGTCCCTAGAAACCAAGGCATAAAAGATCAAATTTTAGAGGAAGCATATAGTTCTGCATATGATATTCATTCTGGCAGTACAAAGATGTATAGAACTTTAAAGAAGCACTATTGGTGGCTTGTGCTGAAATGGAAATGGAAACATGTTACCATGGACTTTTTATTTGGACTTCCTCGCACATCGAGTGGGTTTGATGGCATTTGGAGATTCCAAGTTTACCCTAAAGTTTTGTCTGAGTTTGCAACAAGTAATGGGCACCAATTTACATTTCAGTACCAGATTTCGTCCTCTGATATATTGTCAATCATAAAGAACCAAGACCTTGGAAGATATGCTTCAAGCTTGTGA ATGAAATATGATAGGTTGTGTGTCCCTAGAAACCAAGGCATAAAAGATCAAATTTTAGAGGAAGCATATAGTTCTGCATATGATATTCATTCTGGCAGTACAAAGATGTATAGAACTTTAAAGAAGCACTATTGGTGGCTTGTGCTGAAATGGAAATGGAAACATGTTACCATGGACTTTTTATTTGGACTTCCTCGCACATCGAGTGGGTTTGATGGCATTTGGAGATTCCAAGTTTACCCTAAAGTTTTGTCTGAGTTTGCAACAAGTAATGGGCACCAATTTACATTTCAGTACCAGATTTCGTCCTCTGATATATTGTCAATCATAAAGAACCAAGACCTTGGAAGATATGCTTCAAGCTTGTGA
BLAST of CSPI03G21620.1 vs. TrEMBL
Match: Q8S656_ORYSJ (Putative Sorghum bicolor 22 kDa kafirin cluster OS=Oryza sativa subsp. japonica GN=OSJNBa0004A10.12 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 9.6e-18 Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. TrEMBL
Match: Q7XXG1_ORYSJ (OSJNBb0089K24.9 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0089K24.9 PE=4 SV=2) HSP 1 Score: 95.9 bits (237), Expect = 3.6e-17 Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. TrEMBL
Match: Q75GY7_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g46170 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 4.8e-17 Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. TrEMBL
Match: Q2QRU8_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os12g26340 PE=4 SV=2) HSP 1 Score: 95.5 bits (236), Expect = 4.8e-17 Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. TrEMBL
Match: Q7XXI0_ORYSJ (OSJNBa0059H15.9 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0059H15.9 PE=4 SV=2) HSP 1 Score: 95.1 bits (235), Expect = 6.2e-17 Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. NCBI nr
Match: gi|19881707|gb|AAM01108.1|AC098682_12 (Putative Sorghum bicolor 22 kDa kafirin cluster [Oryza sativa Japonica Group]) HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17 Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. NCBI nr
Match: gi|38344103|emb|CAD39399.2| (OSJNBb0089K24.9 [Oryza sativa Japonica Group]) HSP 1 Score: 95.9 bits (237), Expect = 5.2e-17 Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. NCBI nr
Match: gi|108862640|gb|ABA98065.2| (retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]) HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17 Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. NCBI nr
Match: gi|41469587|gb|AAS07330.1| (putative polyprotein [Oryza sativa Japonica Group]) HSP 1 Score: 95.5 bits (236), Expect = 6.8e-17 Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
BLAST of CSPI03G21620.1 vs. NCBI nr
Match: gi|38347245|emb|CAD39358.2| (OSJNBa0059H15.9 [Oryza sativa Japonica Group]) HSP 1 Score: 95.1 bits (235), Expect = 8.9e-17 Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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