CSPI03G21530.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTTTCTCAAAGGTACTTGGAATCTCACAAAAGAAAATATATTTGAAATTTTCAATGACTTCCATAAAAATTGCATCATCAACAGTATTGTGAATTCTACCTTTATTGCTCTCATTGCAAAAAAGGAAACATGCTCAGCCCCTTCGGACTACAGACCCATAAGCCTTACAACTGGTCTGTACAAGCTTATTGCTAAAGTTATTGCCGAAAAACTAAAACAAGTTATGTCTGATATTATCTCAGAGAACCAATTAGCTTTCGTCAGAGGGAGGTAAATTACGGATGCCATTTTGATTGCAAATGAAGCGGTGGATTTCTAGAAGCAGAAAAAGGCAAAAGGATATGTGCTCAAGCTTGACATCGAAAAGGCTTTTGATAAAATAAACTAGACTTTCATCGATTTTATACTGCAAAAGAAAGGCTTCCCACAAAAATGGTGTAATTGGATTGAAGTTTGTATTACTAGTGTTCAATACTCCATCCTTATCAACGGCAGACCCAAAGGTAAAATTAAACCCACAAGAGGCATCCGGCAAGGTGATCCGATCTCTCCTTTCATTTTTGTTCTCGCGATGGATTATCTCAGCATTCTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGGAAACATAACCTCACTCATCTCCTCTTTGTCGATGATATCCTTCTTTTTATGGAGGATGATGAAGAAACCATAAATAACATGAGAAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCATGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAA ATGGAGTTTCTCAAAGGTACTTGGAATCTCACAAAAGAAAATATATTTGAAATTTTCAATGACTTCCATAAAAATTGCATCATCAACAGTATTGTGAATTCTACCTTTATTGCTCTCATTGCAAAAAAGGAAACATGCTCAGCCCCTTCGGACTACAGACCCATAAGCCTTACAACTGGTCTGTACAAGCTTATTGCTAAAGTTATTGCCGAAAAACTAAAACAAGTTATGTCTGATATTATCTCAGAGAACCAATTAGCTTTCGTCAGAGGGAGACCCAAAGGTAAAATTAAACCCACAAGAGGCATCCGGCAAGGTGATCCGATCTCTCCTTTCATTTTTGTTCTCGCGATGGATTATCTCAGCATTCTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGGAAACATAACCTCACTCATCTCCTCTTTGTCGATGATATCCTTCTTTTTATGGAGGATGATGAAGAAACCATAAATAACATGAGAAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCATGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAA ATGGAGTTTCTCAAAGGTACTTGGAATCTCACAAAAGAAAATATATTTGAAATTTTCAATGACTTCCATAAAAATTGCATCATCAACAGTATTGTGAATTCTACCTTTATTGCTCTCATTGCAAAAAAGGAAACATGCTCAGCCCCTTCGGACTACAGACCCATAAGCCTTACAACTGGTCTGTACAAGCTTATTGCTAAAGTTATTGCCGAAAAACTAAAACAAGTTATGTCTGATATTATCTCAGAGAACCAATTAGCTTTCGTCAGAGGGAGACCCAAAGGTAAAATTAAACCCACAAGAGGCATCCGGCAAGGTGATCCGATCTCTCCTTTCATTTTTGTTCTCGCGATGGATTATCTCAGCATTCTTCTCAATCACTTGGAGAAAAAAAACTTGATAAAAGGAGTTAGTTTCAATGGGAAACATAACCTCACTCATCTCCTCTTTGTCGATGATATCCTTCTTTTTATGGAGGATGATGAAGAAACCATAAATAACATGAGAAATGCCCTTCGGCTTTTTGAATTGGCCTCAGGTCTCAACATCAACCTCAACAAATCCATGATCTCTCCTATCAACATTGATACACAGAGAACAAATTATGTGGCGGCTAAA
BLAST of CSPI03G21530.1 vs. Swiss-Prot
Match: M1250_ARATH (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana GN=AtMg01250 PE=4 SV=1) HSP 1 Score: 63.2 bits (152), Expect = 3.9e-09 Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. TrEMBL
Match: A6YTD8_CUCME (Reverse transcriptase OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 1.4e-34 Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. TrEMBL
Match: A5AWH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000114 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 9.4e-34 Identity = 82/216 (37.96%), Postives = 124/216 (57.41%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. TrEMBL
Match: A5B9F0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035345 PE=4 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 7.9e-33 Identity = 82/224 (36.61%), Postives = 127/224 (56.70%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. TrEMBL
Match: A0A151RPU0_CAJCA (Transposon TX1 uncharacterized (Fragment) OS=Cajanus cajan GN=KK1_033913 PE=4 SV=1) HSP 1 Score: 143.3 bits (360), Expect = 3.3e-31 Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. TrEMBL
Match: A5BA37_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_036806 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 5.3e-29 Identity = 76/200 (38.00%), Postives = 117/200 (58.50%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. TAIR10
Match: ATMG01250.1 (ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)) HSP 1 Score: 63.2 bits (152), Expect = 2.2e-10 Identity = 27/69 (39.13%), Postives = 43/69 (62.32%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. NCBI nr
Match: gi|150036245|gb|ABR67408.1| (reverse transcriptase [Cucumis melo subsp. melo]) HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34 Identity = 81/144 (56.25%), Postives = 103/144 (71.53%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. NCBI nr
Match: gi|147787926|emb|CAN73852.1| (hypothetical protein VITISV_000114 [Vitis vinifera]) HSP 1 Score: 151.8 bits (382), Expect = 1.3e-33 Identity = 82/216 (37.96%), Postives = 124/216 (57.41%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. NCBI nr
Match: gi|659130833|ref|XP_008465376.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Cucumis melo]) HSP 1 Score: 151.4 bits (381), Expect = 1.8e-33 Identity = 80/144 (55.56%), Postives = 103/144 (71.53%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. NCBI nr
Match: gi|147838411|emb|CAN74319.1| (hypothetical protein VITISV_035345 [Vitis vinifera]) HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32 Identity = 82/224 (36.61%), Postives = 127/224 (56.70%), Query Frame = 1
BLAST of CSPI03G21530.1 vs. NCBI nr
Match: gi|1012333163|gb|KYP44566.1| (Transposon TX1 uncharacterized, partial [Cajanus cajan]) HSP 1 Score: 143.3 bits (360), Expect = 4.8e-31 Identity = 78/199 (39.20%), Postives = 121/199 (60.80%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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