Bhi04M000106 (mRNA) Wax gourd
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCCATTGTGATTTCAGACCCCTCACCTTTATTGCCGGCTCGTCACTCGCCGCCTCCGCCGCTCGCTGCAACTGGTTACTGGAACTCGACCCGAAAAGTCATCTCTAGGTAATATAGTAAACCATCTTCGTCGTTTCTCTTCCATCGATGTCGACTGAACTTGGTTGCGATAATTTTGAACGTAATCGGAAATCTGATTCGGACTTTTAGCTTCCGTCCGGTTCGATGAGTACCCACACATTCGAGCGGTCGGTTCGGTCCAGAATTTTTCTGTGCGAACCGAACCGAACCAATTTACAGTGTAGCTCCCGAAGGGTTGATGCTTCCAAAACCAAAAACTCTGGACAAAACCATCTTGTTTTCATTGGTTTGCTCTAAGGTCGATTATTGATCCATATCTCCGCCCACCTCAGCTGTCTTCGGCCAACTTTTCGACGAGAAATCTATCAAATCTCTTTCTGGGGCTTCATCAATTTTATTAGCAGGAATCTTGAATAGGGGTATATGATAAGTGGGCTAGTTTGAGCCTATCAAATCGATTAAATTGAGCTTACTACTTGTTATTTATGAGGAGGCCCCATGAGGTTCTGACTCAATTTTTTTTGGGTTTCTGAATGACCCAGCTTAGTTATTGTTTTGAGACATTATGTTCGTTTAAGTCTATTGTGGGTATGAATTCCCTCATGCTTTTCCATTGCTGTTTTAGTTTATTGACTGGTTCTAGATGAAGCGCCGATTTCTCCCATAACTTTGTTAATTGCCTCCGATTATCTTTTCCTCGCTTCTTCTACGGCCTATTATCTTTGGGAACTCTGTTTATCAAATCCCCTTTTTGCTATTACAATTCGACCACCCTTTTTGGGTTCAACTTTCCTGTCTTTTAGAGTGTTAGCATTTTGTTAGTCTCTTATTTTTTGTAATTGAAGTTCTCATAGCTATTCTAACTTTTATCCCTTTATTATTATTATTATTATTTTATTTTTATTTTTTTCCCCTTTTAATGAACGTTGTTAGTTAGAAAGCTCTTGGGGTAGCAGCAAGGGCCACTCATGGCTTATTCTCGTGGACATGACTTCCTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACGAAATATGTTCAGTGTCCTTTGTGCAAATCTCAGCGAAGTGCAAAAGGTGGGCATGCACATTGGATTTAATCTTATTGCATTGTAGTTATTTACTTTTAGTTTTTCATTTTGGATAATTTAGACATTCCAACATACATTACTCATATGAATGAGTGCTTAATCGGGTTTGCCTTGCAATAATTAAACTCTTTTTATCTTATTACATTTTAGTGTAGTTCATTTTTCCTTCATGTTTATCTGAGTCAAATGTGAAAAGCATTGTCTATTTTTCCATTTCCTATCTCGAGTTTCTATTTTTCTTTTTAATCTTTTTACTAGAACAAACTGTATCTGGGTTGTGCTGGTTTATTTTTCTTAATCTATCAGCTTAATTTAAAAAAATTCCTCTTATAGATGGGAGAGTAAGAGTTCTATTAGGGAATTTGCACGTTGCACCATCTTCTGCTTTGAGCTTTTGACTTTGAAAGCATGGTTTCTTACCCAAAAACAGTGTTCAGCATGAGTAGTTAGTTCATAGGCTTTATATTTGATGATGGTTACCGCTGCTTGCTTTTGCATTTTGGTTTCGATCAAAGCATAAATAAGTTGACTATTATTATTTTGATGAACAACTAGCTTTCATTAGGATAAATGATTATTATTTAATTTTTTTTTTTTTTTTTAAAAAGAAAGGAAAAAAACCAATCTCAATAGGACACAAAGAACCTTCCACTCAGATTAAGTAGTTGAAGCCATCTGCGGATAAGGGGAAAAAAGGGAGAAAGATGATCCCTTGATGTAGCCAAACCTTTCATCTAGCTTTTCTATTCAGGAAAGAACCAAGAAGTCCACAGACGAGAGTCATCCTTTAACTCATACTATCCTCCTCTACCCAACTCATTAGCTGTAAGGATTGAGTCTATAATTTGGAAATGTCCAGCAAAAGCCAGGGGAAATTTTGAGACGATTCTAGAGAGGATAGTTTTGAACCTATTTACAAACATTTATCAAGAATTTCCCGTATCCATTACAAAAAAAAAAAAAATTTTTTTTTGTAAGGACCCATAGTTAGGGAGGCTTACGGGTCTATTGTGTTTCACTTCCTTGCCGTCATCCTCCATAGCCATGAAGGCAATATAAGTCTTGGTTATATTCACACAAAAAATTCTTTTCTTAAAGAAGCCAAGATGTTGACATGGTATCATGCTTGAAAGTATCCCAAGTTTTTGTGAAGAATTCTAAGGAAAACCCAATACAGGAGTAGAACTAGTCCAAGACTAGAAATAGCCCATGGAACTTTATGCTATATAAAAGCCTACAGGAGAAGAGCACCGGCTGTAGAGATAGAAATCCAACACAGACCACGGAAGATTATGTGGTCCTACACTCCTATCAGCTTAGTACAGTAGAATGCTGGGATTCTGACAATTGGAGCCTTAAGTTTAGACGGCAACTGACTGATGTAGGTGAATGCATAAGGCTGAGTCACTTATTAATTTGAAAGCTTGTATTTCAAACTATCAAGATAGACCTTGGAAACTTTGATTTGACTTCTTCTGAAACCTATTTTCTTACTATGAATGAGTTTCTTAATTTCTCCAAAAAAATTGCTATAGGGACAAAGAGATACCTTGAGAGGTTAAAATTCTTTGTTTGGGACGTTGATCTTGGTATGGAATCTCTATTCCCAACAATTTTTCAGATGCCCTCCCTCTCTGTCTCACAGTTTTTTAACTAGTTAGTTAGCTTCCTTTTGCAAATAAGAACTAACTCAACCTGTTTTGCCAGTATAACTACCCGAGGAAAAACTTCTAACTACAGAAATTAGCATACATACTGCTCAATTATGACTTCTACTCAACCCTTAACAAAGTATTGTCCTTCGTAGTATTGCGCCTAAGATGTGTGACATATTGGTGGTAGCTAGCATAAATCTCATCCATAAGAATATGTGCATGATAGGGTTCTCAACCCACCTCCCCCCCGCCCCCCTCTCTAAATAATAAATAAAAGCAAATATTTCCATATTACAATTACATGGTGAAAGGATCATCAATGAAAGGATTGTTTCTATTTCAAAAAAAATAAAAAATAAAAAAATACATGGTCAAAGACTTTAGTGGATGTGGAACCAAATTCTAACTGCTAACAGCTGAGCAAAGACTACAAAGATATCAAACTGATCAAAATTCTCAGGCTGGTTATACGTCTTATTCAAGGGCCCAAGGGCCGGCCTGATTTCCCTCAATGTTGTTCAATTCTACATCTTGAAATTGGTGTTCTGAAAGTGTATACCAAATTATTTTAGAATGTGATGCTTTGCTTTCTTGATTGGAGATATTGAAATGGAGCAAATGCAGTTGAGAAATTATTGTTTTAATATTTTATGCACTCTTTTATTTGATATCTCTAACTGTGGCTTATTTCAGAGATCATTGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGTACGCCATTTGAATCATCAACATTATCCCCATGCTTTCTAGGTCCAAGACATAGTATCCTCCCTGCAACACGTAGCTTTTGAACTTTAGGGTACCTGATAATTTCTGCTACTTTTATGATGCTTGGTAGAAATGTTTTCTGGATGAATTTATCTGTGGATTATGGGAATGGATTAAACTAAGGAATCTGTATAATGTTCTCTTAGATCAAGGTTTAGGCAAATCAATAAACCAACCAGACCCTGAAAATTCTTATTGGGTTGAAAATCTCGAACCATGAAAAGTTTTAGTATAAGCAAAAGTTAATATGATCTAATCTTAACATGCCCCCTTTTATTTGATTGTCGTCAGACATCCAAAAGTTTTAATTTTGAAATCCTCTTGTGACAACTTGCAGGAAATTAGGAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGTAGTAGGAGAAAAAGAAGTGAATGGTATAAGATTTTGCTTGAGATATTTAAGTATTCCACTAACATGAAGCCGTGTCATGTTTGACAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGGTACACTTTACAAACTTTAAAATAAAACTTTAATTCCTGGGCCCTTTAGTTTAGGCTTTGCTTATTTCTTTTTCCCATTAAAAAGAGATAAGTTTGATTGTGGTTTTGAATAAAAATGCAGATGAGATCAGCTGATGAAGGGCAGACCACATTTTATACCTGTACCAAATGCCATCATCAGACCAGAGAGAATTGATCATCTTCCATATAAAATGTTTCAAGGATGTCACGGTGGTTCATTATATAGAAATATGCAATATCCTTGAATTATGGCTCCAATGCAATCCAAAAGCTTTAACATGCTGAATTATGTTAGACAGTAAAACTTGATCGGAATCTGTAAGTTAAAAAACTTCTCATTAATATATCATGAAGTAGCAAGCA GCCATTGTGATTTCAGACCCCTCACCTTTATTGCCGGCTCGTCACTCGCCGCCTCCGCCGCTCGCTGCAACTGGTTACTGGAACTCGACCCGAAAAGTCATCTCTAGCTTCCGTCCGGTTCGATGAGTACCCACACATTCGAGCGGTCGGTTCGGTCCAGAATTTTTCTGTGCGAACCGAACCGAACCAATTTACAGTGTAGCTCCCGAAGGGTTGATGCTTCCAAAACCAAAAACTCTGGACAAAACCATCTTGTTTTCATTGGTTTGCTCTAAGGTCGATTATTGATCCATATCTCCGCCCACCTCAGCTGTCTTCGGCCAACTTTTCGACGAGAAATCTATCAAATCTCTTTCTGGGGCTTCATCAATTTTATTAGCAGGAATCTTGAATAGGGTTAGAAAGCTCTTGGGGTAGCAGCAAGGGCCACTCATGGCTTATTCTCGTGGACATGACTTCCTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACGAAATATGTTCAGTGTCCTTTGTGCAAATCTCAGCGAAGTGCAAAAGAGATCATTGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGGAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCAGCTGATGAAGGGCAGACCACATTTTATACCTGTACCAAATGCCATCATCAGACCAGAGAGAATTGATCATCTTCCATATAAAATGTTTCAAGGATGTCACGGTGGTTCATTATATAGAAATATGCAATATCCTTGAATTATGGCTCCAATGCAATCCAAAAGCTTTAACATGCTGAATTATGTTAGACAGTAAAACTTGATCGGAATCTGTAAGTTAAAAAACTTCTCATTAATATATCATGAAGTAGCAAGCA ATGGCTTATTCTCGTGGACATGACTTCCTGTTTTGCAATTTGTGTGGAACCATGTTGTCGTTCAGCTCAACGAAATATGTTCAGTGTCCTTTGTGCAAATCTCAGCGAAGTGCAAAAGAGATCATTGGTAGAGAAATAAGTTACACAGTTACTGCTGAGGAAATTAGGAAGCAGTTGGGAATTTCATTAATTGATGAAGAGAAAATGCAGCTATCAAAGGAAAGGAGGAGATGTGAAAAATGTGGGAATGATGAAGCTTGGTTTGAGAGCAGACAGATGAGATCAGCTGATGAAGGGCAGACCACATTTTATACCTGTACCAAATGCCATCATCAGACCAGAGAGAATTGA MAYSRGHDFLFCNLCGTMLSFSSTKYVQCPLCKSQRSAKEIIGREISYTVTAEEIRKQLGISLIDEEKMQLSKERRRCEKCGNDEAWFESRQMRSADEGQTTFYTCTKCHHQTREN
BLAST of Bhi04M000106 vs. Swiss-Prot
Match: sp|Q1RMP0|RPA12_BOVIN (DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus OX=9913 GN=ZNRD1 PE=2 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 7.0e-11 Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 0
BLAST of Bhi04M000106 vs. Swiss-Prot
Match: sp|Q5TM50|RPA12_MACMU (DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta OX=9544 GN=ZNRD1 PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 7.0e-11 Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of Bhi04M000106 vs. Swiss-Prot
Match: sp|Q9P1U0|RPA12_HUMAN (DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens OX=9606 GN=ZNRD1 PE=2 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10 Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of Bhi04M000106 vs. Swiss-Prot
Match: sp|Q1XHV8|RPA12_PANTR (DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes OX=9598 GN=ZNRD1 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.2e-10 Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 0
BLAST of Bhi04M000106 vs. Swiss-Prot
Match: sp|O94703|RPA12_SCHPO (DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa12 PE=3 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 4.5e-10 Identity = 32/111 (28.83%), Postives = 60/111 (54.05%), Query Frame = 0
BLAST of Bhi04M000106 vs. TAIR10
Match: AT3G25940.1 (TFIIB zinc-binding protein) HSP 1 Score: 132.5 bits (332), Expect = 1.7e-31 Identity = 66/118 (55.93%), Postives = 87/118 (73.73%), Query Frame = 0
BLAST of Bhi04M000106 vs. TAIR10
Match: AT1G20065.2 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 72.4 bits (176), Expect = 2.1e-13 Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 0
BLAST of Bhi04M000106 vs. TAIR10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal) HSP 1 Score: 49.3 bits (116), Expect = 1.9e-06 Identity = 31/110 (28.18%), Postives = 56/110 (50.91%), Query Frame = 0
BLAST of Bhi04M000106 vs. TAIR10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal) HSP 1 Score: 48.5 bits (114), Expect = 3.2e-06 Identity = 30/107 (28.04%), Postives = 50/107 (46.73%), Query Frame = 0
BLAST of Bhi04M000106 vs. TrEMBL
Match: tr|A0A0A0LKC4|A0A0A0LKC4_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_2G345940 PE=3 SV=1) HSP 1 Score: 230.7 bits (587), Expect = 1.7e-57 Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 0
BLAST of Bhi04M000106 vs. TrEMBL
Match: tr|A0A1S3BBZ4|A0A1S3BBZ4_CUCME (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103488399 PE=3 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 1.1e-56 Identity = 110/116 (94.83%), Postives = 113/116 (97.41%), Query Frame = 0
BLAST of Bhi04M000106 vs. TrEMBL
Match: tr|B3FNK6|B3FNK6_CUCSA (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 PE=2 SV=1) HSP 1 Score: 211.5 bits (537), Expect = 1.0e-51 Identity = 103/116 (88.79%), Postives = 109/116 (93.97%), Query Frame = 0
BLAST of Bhi04M000106 vs. TrEMBL
Match: tr|A0A1S2YYN8|A0A1S2YYN8_CICAR (DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101496606 PE=3 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 1.6e-39 Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0
BLAST of Bhi04M000106 vs. TrEMBL
Match: tr|A0A1S2Y9R1|A0A1S2Y9R1_CICAR (DNA-directed RNA polymerase subunit OS=Cicer arietinum OX=3827 GN=LOC101500974 PE=3 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 5.9e-39 Identity = 77/116 (66.38%), Postives = 101/116 (87.07%), Query Frame = 0
BLAST of Bhi04M000106 vs. NCBI nr
Match: XP_023546814.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 236.1 bits (601), Expect = 5.9e-59 Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Bhi04M000106 vs. NCBI nr
Match: XP_022144336.1 (DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia] >XP_022144337.1 DNA-directed RNA polymerase I subunit RPA12-like [Momordica charantia]) HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58 Identity = 113/116 (97.41%), Postives = 116/116 (100.00%), Query Frame = 0
BLAST of Bhi04M000106 vs. NCBI nr
Match: XP_022997634.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima] >XP_022997635.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita maxima]) HSP 1 Score: 233.8 bits (595), Expect = 3.0e-58 Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0
BLAST of Bhi04M000106 vs. NCBI nr
Match: XP_022962626.1 (DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata] >XP_022962627.1 DNA-directed RNA polymerase I subunit RPA12-like [Cucurbita moschata]) HSP 1 Score: 233.4 bits (594), Expect = 3.9e-58 Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0
BLAST of Bhi04M000106 vs. NCBI nr
Match: XP_004143007.1 (PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >XP_004143009.1 PREDICTED: DNA-directed RNA polymerase I subunit RPA12 [Cucumis sativus] >KGN62253.1 hypothetical protein Csa_2G345940 [Cucumis sativus]) HSP 1 Score: 230.7 bits (587), Expect = 2.5e-57 Identity = 110/116 (94.83%), Postives = 114/116 (98.28%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17
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