MELO3C033660.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C033660.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr09 : 9369947 .. 9370469 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGAAGTTGCCCGACACTAATATTCAAGGATCACCGACAATAGATTATCGTGTGAAATCTCTTAAAAAAACCTACCAAGCAATTGCAGAAATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAATGAGATTTGTTTGATAGCTGGGTAAAGGTATTAACTTCATAATACAATTATACGTACTTTTTATAATCACAATCGTCAACTAATCTGCCTAAATTACGTTTCTACAGAGTCATCCTGCAGCCAAAGGCCTTCTACACAAATCATTTCCAAATTATGAGGATTTGTCATATGTCTTCAGCAAAGATCGAACAACGGGAGCACGTTTAGAGACCTTTGCTGATGTAGGATCTAATGTGTCGAACTTGTTTAAGACATCCCGATGATGTATAGCCAAGGAGTGTATATGTCACAAAATGAGATGTTTGGAATACGTGTAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAA

mRNA sequence

ATGGCAGAGAAGTTGCCCGACACTAATATTCAAGGATCACCGACAATAGATTATCGTGTGAAATCTCTTAAAAAAACCTACCAAGCAATTGCAGAAATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAATGAGATTTGTTTGATAGCTGGGTAAAGAGTCATCCTGCAGCCAAAGGCCTTCTACACAAATCATTTCCAAATTATGAGGATTTGTCATATGTCTTCAGCAAAGATCGAACAACGGGAGCACGTTTAGAGACCTTTGCTGATGTAGGATCTAATGTGTCGAACTTGTTTAAGACATCCCGATGATGTATAGCCAAGGAGTGTATATGTCACAAAATGAGATGTTTGGAATACGTGTAGGTCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAA

Coding sequence (CDS)

ATGGCAGAGAAGTTGCCCGACACTAATATTCAAGGATCACCGACAATAGATTATCGTGTGAAATCTCTTAAAAAAACCTACCAAGCAATTGCAGAAATGAGGGGGCCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCATCGCAGAATGA

Protein sequence

MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE
Homology
[Close]
BLAST of MELO3C033660.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-18
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
           MAEKLP TNIQ S TID  VKSLKKTY AIAEMRGPSCSGFGWNEEFQCIIAE
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAE 104

[Close]
BLAST of MELO3C033660.2 vs. NCBI nr
Match: XP_016899497.1 (PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo])

HSP 1 Score: 79.0 bits (193), Expect = 5.6e-12
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
          MAEKLP   +  +  ID R+K+LK+T+QAIAEMRGP+CSG GWN++ +CIIAE
Sbjct: 2  MAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAE 54

[Close]
BLAST of MELO3C033660.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1   MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
           MAEKL    ++ +  ID R+K+LK+T+QAIAEM GP+CSGFGWN+E +CI+AE
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAE 421

[Close]
BLAST of MELO3C033660.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1   MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
           MA K+P +NI  S TID R+K +K+ + A+AEMRGP+CSGFGWN+E +CI+AE
Sbjct: 407 MAFKIPGSNIHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAE 458

[Close]
BLAST of MELO3C033660.2 vs. NCBI nr
Match: XP_008459131.1 (PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-10
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1  MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
          MA K+P  NI  S TID R+K LK+ + A+AEMRGP+CSGFGWN+E +CI+AE
Sbjct: 48 MAFKIPGCNIHAS-TIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAE 99

[Close]
BLAST of MELO3C033660.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-18
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 0 

Query: 1   MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
           MAEKLP TNIQ S TID  VKSLKKTY AIAEMRGPSCSGFGWNEEFQCIIAE
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAE 104

[Close]
BLAST of MELO3C033660.2 vs. TrEMBL
Match: tr|A0A1S4DU21|A0A1S4DU21_CUCME (uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.7e-12
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
          MAEKLP   +  +  ID R+K+LK+T+QAIAEMRGP+CSG GWN++ +CIIAE
Sbjct: 2  MAEKLPGCQVHATTVIDSRIKTLKQTFQAIAEMRGPACSGLGWNDKEKCIIAE 54

[Close]
BLAST of MELO3C033660.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1   MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
           MAEKL    ++ +  ID R+K+LK+T+QAIAEM GP+CSGFGWN+E +CI+AE
Sbjct: 369 MAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPACSGFGWNDEEKCIVAE 421

[Close]
BLAST of MELO3C033660.2 vs. TrEMBL
Match: tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME (uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.0e-11
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 0 

Query: 1  MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
          MA K+P  NI  S TID R+K LK+ + A+AEMRGP+CSGFGWN+E +CI+AE
Sbjct: 48 MAFKIPGCNIHAS-TIDSRIKLLKRMFHALAEMRGPNCSGFGWNDEKKCIVAE 99

[Close]
BLAST of MELO3C033660.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.0e-11
Identity = 32/53 (60.38%), Postives = 43/53 (81.13%), Query Frame = 0 

Query: 1  MAEKLPDTNIQGSPTIDYRVKSLKKTYQAIAEMRGPSCSGFGWNEEFQCIIAE 54
          MA K+P +NI  S TID R+K +K+ + A+AEMRGP+CSGFGWN+E +CI+AE
Sbjct: 48 MAFKIPGSNIHAS-TIDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAE 99

The following BLAST results are available for this feature:
BLAST of MELO3C033660.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008441954.12.3e-1888.68PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
XP_016899497.15.6e-1262.26PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo][more]
ADN33754.11.6e-1160.38retrotransposon protein [Cucumis melo subsp. melo][more]
ADN34114.11.4e-1060.38retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008459131.11.4e-1062.26PREDICTED: uncharacterized protein LOC103498331 [Cucumis melo][more]
BLAST of MELO3C033660.2 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of MELO3C033660.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C033660.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME1.5e-1888.68uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
tr|A0A1S4DU21|A0A1S4DU21_CUCME3.7e-1262.26uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=... [more]
tr|E5GBB2|E5GBB2_CUCME1.1e-1160.38Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3C8Z4|A0A1S3C8Z4_CUCME9.0e-1162.26uncharacterized protein LOC103498331 OS=Cucumis melo OX=3656 GN=LOC103498331 PE=... [more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME9.0e-1160.38uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C033660.2.1MELO3C033660.2.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C033660.2Cucumber (Gy14) v2cgybmedB300
MELO3C033660.2Cucumber (Gy14) v1cgymedB006
MELO3C033660.2Cucurbita maxima (Rimu)cmamedB159
MELO3C033660.2Cucurbita maxima (Rimu)cmamedB805
MELO3C033660.2Cucurbita moschata (Rifu)cmomedB149
MELO3C033660.2Cucurbita moschata (Rifu)cmomedB803
MELO3C033660.2Cucurbita pepo (Zucchini)cpemedB878
MELO3C033660.2Wild cucumber (PI 183967)cpimedB340
MELO3C033660.2Cucumber (Chinese Long) v2cumedB338
MELO3C033660.2Bottle gourd (USVL1VR-Ls)lsimedB173
MELO3C033660.2Watermelon (Charleston Gray)medwcgB001
MELO3C033660.2Watermelon (97103) v1medwmB002
MELO3C033660.2Silver-seed gourdcarmedB0331
MELO3C033660.2Cucumber (Chinese Long) v3cucmedB351
MELO3C033660.2Watermelon (97103) v2medwmbB035
MELO3C033660.2Wax gourdmedwgoB026