MELO3C032939.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C032939.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	B3 domain-containing transcription factor VRN1-like
Location	chr08 : 3361192 .. 3362535 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTATACTTAATCATTGCTATCTATTATAATTACAAAAAAAAAAAAAAAAAAGTAGCCAAGCTTAAGGCCCACGAGCGGATTTGAGCCGTCGGATAGCATCGATGATACAATCCATACATCGCCAGACCCACCACTTGTAAGACGAGAGCTCATTCATTGGTTTTTAAACAACTCATAGGTTTTCTTTCAAATAAAATTCAAACAAACAGAACGTAACCCAAAAGTTTCCATTTTACTAATTTATGGACATGACATGGTGAATAGTATCCTTCAAACGTCGTCGAATCACACAATAGCATCTGAACAGACACTTCCATTTCTTCTTCACTCTCTGCAGCATCGTCATAGCTCCATCTTCACCTCTGGCCTTTCTCCAAAAATTCAAAACATACACACACAAACACACACTATGTCTTCTTCTCCAAAGTTCTTCAGAATGGTATTGCAGAGAAATCTCGACGACCCAAAACTGGTGAAAATACATCCTCCCTTCATTGTCAAATTTTTTTAACCTTTTCAAGAAGATGAATGTACCCATCTTTTAAAGTTTTGATTTTTATCACTTTTTCCTCCCTCCCATAAACATGGGAAACAAAAAGGTGCATACTTTTCAAGTTCTAAAGAAACATTTTCTTTTGGGGTTTGTTTTTTCAGATGATTCCGAAGAAGTTTGTGGAAGATTATGGTAAGGTTTTGTCAAATTCAGTTAATTTAAAGCTTTCAGATGGAAGGGAATGGAAGGTGGGTTTAAGAACGGCTACGAACGGCGCTGTTTGGCTAGAAAAGGGTTGGGATAAATTTTCAGAACATTACTGTTTAGAGTTTGGGTCTTTGCTGATCTTTACATTATTAGATGGAAGGAGGAGTTCGGATTTTGGAGTAACTATATTTGACCCAACCGGAGTGGAAACCAAATACTTTTCTTCTTCACCACAATTTAATGAGGATTCTTATTCTCATTCCGACTCCGACTCCGACTCCGACTCCGATGGCAATACCAATACCAATTCCGACATCAATACTGATTCCGATTCTGATGAAAGTTCAGAGAGTTTTCGTGGACATTCGAAGAAGAGGAAGAATGTTTCAGTTCCATGTAGTCAATCTCGTAGGAAAATGAGAAAGGACGATTCGTTTACAATCAAAACAGAACCTGCAGAAGCAGAAGCAGAAGCAGAAGCAGGTATGCTATTTCTTTCCCCGTATATTGTTTTAGAGTAAATGGTTTGTTTATATGCATTTATGAAACAAGTAACTTTTTACTAGAGATTCAACGTTTAATAATCTATTTTTTTGGAAGAGTATTTGGGAGTTAGCATTGTTTTTAAAAGTAGTGTGGTTTGA

mRNA sequence

GTATACTTAATCATTGCTATCTATTATAATTACAAAAAAAAAAAAAAAAAAGTAGCCAAGCTTAAGGCCCACGAGCGGATTTGAGCCGTCGGATAGCATCGATGATACAATCCATACATCGCCAGACCCACCACTTGTAAGACGAGAGCTCATTCATTGGTTTTTAAACAACTCATAGGTTTTCTTTCAAATAAAATTCAAACAAACAGAACGTAACCCAAAAGTTTCCATTTTACTAATTTATGGACATGACATGGTGAATAGTATCCTTCAAACGTCGTCGAATCACACAATAGCATCTGAACAGACACTTCCATTTCTTCTTCACTCTCTGCAGCATCGTCATAGCTCCATCTTCACCTCTGGCCTTTCTCCAAAAATTCAAAACATACACACACAAACACACACTATGTCTTCTTCTCCAAAGTTCTTCAGAATGGTATTGCAGAGAAATCTCGACGACCCAAAACTGATGATTCCGAAGAAGTTTGTGGAAGATTATGATGGAAGGAGGAGTTCGGATTTTGGAGTAACTATATTTGACCCAACCGGAGTGGAAACCAAATACTTTTCTTCTTCACCACAATTTAATGAGGATTCTTATTCTCATTCCGACTCCGACTCCGACTCCGACTCCGATGGCAATACCAATACCAATTCCGACATCAATACTGATTCCGATTCTGATGAAAGTTCAGAGAGTTTTCGTGGACATTCGAAGAAGAGGAAGAATGTTTCAGTTCCATGTAGTCAATCTCGTAGGAAAATGAGAAAGGACGATTCGTTTACAATCAAAACAGAACCTGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGTATTTGGGAGTTAGCATTGTTTTTAAAAGTAGTGTGGTTTGA

Coding sequence (CDS)

ATGGTGAATAGTATCCTTCAAACGTCGTCGAATCACACAATAGCATCTGAACAGACACTTCCATTTCTTCTTCACTCTCTGCAGCATCGTCATAGCTCCATCTTCACCTCTGGCCTTTCTCCAAAAATTCAAAACATACACACACAAACACACACTATGTCTTCTTCTCCAAAGTTCTTCAGAATGGTATTGCAGAGAAATCTCGACGACCCAAAACTGATGATTCCGAAGAAGTTTGTGGAAGATTATGATGGAAGGAGGAGTTCGGATTTTGGAGTAACTATATTTGACCCAACCGGAGTGGAAACCAAATACTTTTCTTCTTCACCACAATTTAATGAGGATTCTTATTCTCATTCCGACTCCGACTCCGACTCCGACTCCGATGGCAATACCAATACCAATTCCGACATCAATACTGATTCCGATTCTGATGAAAGTTCAGAGAGTTTTCGTGGACATTCGAAGAAGAGGAAGAATGTTTCAGTTCCATGTAGTCAATCTCGTAGGAAAATGAGAAAGGACGATTCGTTTACAATCAAAACAGAACCTGCAGAAGCAGAAGCAGAAGCAGAAGCAGAGTATTTGGGAGTTAGCATTGTTTTTAAAAGTAGTGTGGTTTGA

Protein sequence

MVNSILQTSSNHTIASEQTLPFLLHSLQHRHSSIFTSGLSPKIQNIHTQTHTMSSSPKFFRMVLQRNLDDPKLMIPKKFVEDYDGRRSSDFGVTIFDPTGVETKYFSSSPQFNEDSYSHSDSDSDSDSDGNTNTNSDINTDSDSDESSESFRGHSKKRKNVSVPCSQSRRKMRKDDSFTIKTEPAEAEAEAEAEYLGVSIVFKSSVV

Homology

[Close]

BLAST of MELO3C032939.2 vs. NCBI nr
Match: XP_008440222.1 (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 5.3e-50
Identity = 116/172 (67.44%), Postives = 116/172 (67.44%), Query Frame = 0


Query: 1   MVNSILQTSSNHTIASEQTLPFLLHSLQHRHSSIFTSGLSPKIQNIHTQTHTMSSSPKFF 60
           MVNSILQTSSNHTIASEQTLPFLLHSLQHRHSSIFTSGLSPKIQNIHTQTHTMSSSPKFF
Sbjct: 1   MVNSILQTSSNHTIASEQTLPFLLHSLQHRHSSIFTSGLSPKIQNIHTQTHTMSSSPKFF 60

Query: 61  RMVLQRNLDDPKLMIPKKFVEDY------------------------------------- 117
           RMVLQRNLDDPKLMIPKKFVEDY                                     
Sbjct: 61  RMVLQRNLDDPKLMIPKKFVEDYGKVLSNSVNLKLSDGREWKVGLRTATNGAVWLEKGWD 120

[Close]

BLAST of MELO3C032939.2 vs. NCBI nr
Match: XP_004142020.2 (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 [Cucumis sativus] >KGN48482.1 hypothetical protein Csa_6G489980 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 57/120 (47.50%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 53  MSSSPKFFRMVLQRNLDDPKLMIPKKFVEDY----------------------------- 112
           MSSSPKFFRMVLQRNLDDPKLMIPK FVEDY                             
Sbjct: 1   MSSSPKFFRMVLQRNLDDPKLMIPKTFVEDYGKALSNWVNLKLSDGLEWKVGLRKATNGA 60

Query: 113 ---------------------------DGRRSSDFGVTIFDPTGVETKYFSSSPQFNEDS 117
                                      +GRRSS+F VTIFDPTGVETKY SSSPQ  EDS
Sbjct: 61  LWLEKGWDKFSEHYCLEFGSLLIFTLLNGRRSSNFEVTIFDPTGVETKYVSSSPQLKEDS 120

[Close]

BLAST of MELO3C032939.2 vs. NCBI nr
Match: XP_011657839.1 (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 91.3 bits (225), Expect = 4.2e-15
Identity = 57/120 (47.50%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 53  MSSSPKFFRMVLQRNLDDPKLMIPKKFVEDY----------------------------- 112
           MSSSPKFFRMVLQRNLDDPKLMIPK FVEDY                             
Sbjct: 1   MSSSPKFFRMVLQRNLDDPKLMIPKTFVEDYGKALSNWVNLKLSDGLEWKVGLRKATNGA 60

Query: 113 ---------------------------DGRRSSDFGVTIFDPTGVETKYFSSSPQFNEDS 117
                                      +GRRSS+F VTIFDPTGVETKY SSSPQ  EDS
Sbjct: 61  LWLEKGWDKFSEHYCLEFGSLLIFTLLNGRRSSNFEVTIFDPTGVETKYVSSSPQLKEDS 120

[Close]

BLAST of MELO3C032939.2 vs. NCBI nr
Match: XP_004142019.2 (PREDICTED: B3 domain-containing transcription factor VRN1 [Cucumis sativus] >KGN48483.1 hypothetical protein Csa_6G489990 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 49/115 (42.61%), Postives = 54/115 (46.96%), Query Frame = 0


Query: 53  MSSSPKFFRMVLQRNLDDPKLMIPKKFVEDY----------------------------- 112
           M SSPKFFR+VL RNL+DPK+MIPKKFVEDY                             
Sbjct: 1   MPSSPKFFRIVLHRNLEDPKMMIPKKFVEDYGKLLSNSVNLKLSDGKEWRVGLRRATNGA 60

[Close]

BLAST of MELO3C032939.2 vs. NCBI nr
Match: XP_008440216.1 (PREDICTED: uncharacterized protein LOC103484739 isoform X1 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-06
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 53 MSSSPKFFRMVLQRNLDDPKLMIPKKFVEDYD 85
          MSSSPKFFR+V+ RNL+DPK+MIPKKFVEDY+
Sbjct: 1  MSSSPKFFRIVMHRNLEDPKMMIPKKFVEDYE 32

[Close]

BLAST of MELO3C032939.2 vs. TrEMBL
Match: tr|A0A1S3B0K5|A0A1S3B0K5_CUCME (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=LOC103484740 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.5e-50
Identity = 116/172 (67.44%), Postives = 116/172 (67.44%), Query Frame = 0


Query: 1   MVNSILQTSSNHTIASEQTLPFLLHSLQHRHSSIFTSGLSPKIQNIHTQTHTMSSSPKFF 60
           MVNSILQTSSNHTIASEQTLPFLLHSLQHRHSSIFTSGLSPKIQNIHTQTHTMSSSPKFF
Sbjct: 1   MVNSILQTSSNHTIASEQTLPFLLHSLQHRHSSIFTSGLSPKIQNIHTQTHTMSSSPKFF 60

Query: 61  RMVLQRNLDDPKLMIPKKFVEDY------------------------------------- 117
           RMVLQRNLDDPKLMIPKKFVEDY                                     
Sbjct: 61  RMVLQRNLDDPKLMIPKKFVEDYGKVLSNSVNLKLSDGREWKVGLRTATNGAVWLEKGWD 120

[Close]

BLAST of MELO3C032939.2 vs. TrEMBL
Match: tr|A0A0A0KJE0|A0A0A0KJE0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489980 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 57/120 (47.50%), Postives = 59/120 (49.17%), Query Frame = 0


Query: 53  MSSSPKFFRMVLQRNLDDPKLMIPKKFVEDY----------------------------- 112
           MSSSPKFFRMVLQRNLDDPKLMIPK FVEDY                             
Sbjct: 1   MSSSPKFFRMVLQRNLDDPKLMIPKTFVEDYGKALSNWVNLKLSDGLEWKVGLRKATNGA 60

Query: 113 ---------------------------DGRRSSDFGVTIFDPTGVETKYFSSSPQFNEDS 117
                                      +GRRSS+F VTIFDPTGVETKY SSSPQ  EDS
Sbjct: 61  LWLEKGWDKFSEHYCLEFGSLLIFTLLNGRRSSNFEVTIFDPTGVETKYVSSSPQLKEDS 120

[Close]

BLAST of MELO3C032939.2 vs. TrEMBL
Match: tr|A0A0A0KG44|A0A0A0KG44_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489990 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.4e-11
Identity = 49/115 (42.61%), Postives = 54/115 (46.96%), Query Frame = 0


Query: 53  MSSSPKFFRMVLQRNLDDPKLMIPKKFVEDY----------------------------- 112
           M SSPKFFR+VL RNL+DPK+MIPKKFVEDY                             
Sbjct: 1   MPSSPKFFRIVLHRNLEDPKMMIPKKFVEDYGKLLSNSVNLKLSDGKEWRVGLRRATNGA 60

[Close]

BLAST of MELO3C032939.2 vs. TrEMBL
Match: tr|A0A1S3B1C1|A0A1S3B1C1_CUCME (uncharacterized protein LOC103484739 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484739 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.3e-06
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 53 MSSSPKFFRMVLQRNLDDPKLMIPKKFVEDYD 85
          MSSSPKFFR+V+ RNL+DPK+MIPKKFVEDY+
Sbjct: 1  MSSSPKFFRIVMHRNLEDPKMMIPKKFVEDYE 32

[Close]

BLAST of MELO3C032939.2 vs. TrEMBL
Match: tr|A0A1S3B070|A0A1S3B070_CUCME (B3 domain-containing protein Os12g0591400-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484739 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.3e-06
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 53 MSSSPKFFRMVLQRNLDDPKLMIPKKFVEDYD 85
          MSSSPKFFR+V+ RNL+DPK+MIPKKFVEDY+
Sbjct: 1  MSSSPKFFRIVMHRNLEDPKMMIPKKFVEDYE 32

The following BLAST results are available for this feature:

BLAST of MELO3C032939.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008440222.1	5.3e-50	67.44	PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo]	[more]
XP_004142020.2	4.2e-15	47.50	PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 [Cucum...	[more]
XP_011657839.1	4.2e-15	47.50	PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cucum...	[more]
XP_004142019.2	2.2e-11	42.61	PREDICTED: B3 domain-containing transcription factor VRN1 [Cucumis sativus] >KGN...	[more]
XP_008440216.1	8.0e-06	81.25	PREDICTED: uncharacterized protein LOC103484739 isoform X1 [Cucumis melo]	[more]

BLAST of MELO3C032939.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C032939.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C032939.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B0K5\|A0A1S3B0K5_CUCME	3.5e-50	67.44	B3 domain-containing transcription factor VRN1-like OS=Cucumis melo OX=3656 GN=L...	[more]
tr\|A0A0A0KJE0\|A0A0A0KJE0_CUCSA	2.8e-15	47.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489980 PE=4 SV=1	[more]
tr\|A0A0A0KG44\|A0A0A0KG44_CUCSA	1.4e-11	42.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489990 PE=4 SV=1	[more]
tr\|A0A1S3B1C1\|A0A1S3B1C1_CUCME	5.3e-06	81.25	uncharacterized protein LOC103484739 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3B070\|A0A1S3B070_CUCME	5.3e-06	81.25	B3 domain-containing protein Os12g0591400-like isoform X2 OS=Cucumis melo OX=365...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C032939.2.1	MELO3C032939.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..141

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C032939.2	Wax gourd	medwgoB629
MELO3C032939.2	Wax gourd	medwgoB631
MELO3C032939.2	Wax gourd	medwgoB660
MELO3C032939.2	Cucumber (Gy14) v2	cgybmedB132
MELO3C032939.2	Cucumber (Gy14) v2	cgybmedB135
MELO3C032939.2	Cucumber (Gy14) v2	cgybmedB440
MELO3C032939.2	Cucumber (Gy14) v2	cgybmedB500
MELO3C032939.2	Cucumber (Gy14) v1	cgymedB131
MELO3C032939.2	Cucumber (Gy14) v1	cgymedB151
MELO3C032939.2	Cucumber (Gy14) v1	cgymedB382
MELO3C032939.2	Cucumber (Gy14) v1	cgymedB390
MELO3C032939.2	Cucurbita maxima (Rimu)	cmamedB045
MELO3C032939.2	Cucurbita maxima (Rimu)	cmamedB202
MELO3C032939.2	Cucurbita maxima (Rimu)	cmamedB703
MELO3C032939.2	Cucurbita maxima (Rimu)	cmamedB840
MELO3C032939.2	Cucurbita maxima (Rimu)	cmamedB907
MELO3C032939.2	Cucurbita moschata (Rifu)	cmomedB036
MELO3C032939.2	Cucurbita moschata (Rifu)	cmomedB192
MELO3C032939.2	Cucurbita moschata (Rifu)	cmomedB659
MELO3C032939.2	Cucurbita moschata (Rifu)	cmomedB694
MELO3C032939.2	Cucurbita moschata (Rifu)	cmomedB832
MELO3C032939.2	Cucurbita moschata (Rifu)	cmomedB896
MELO3C032939.2	Cucurbita pepo (Zucchini)	cpemedB080
MELO3C032939.2	Cucurbita pepo (Zucchini)	cpemedB135
MELO3C032939.2	Cucurbita pepo (Zucchini)	cpemedB531
MELO3C032939.2	Cucurbita pepo (Zucchini)	cpemedB648
MELO3C032939.2	Cucurbita pepo (Zucchini)	cpemedB873
MELO3C032939.2	Cucurbita pepo (Zucchini)	cpemedB925
MELO3C032939.2	Wild cucumber (PI 183967)	cpimedB150
MELO3C032939.2	Wild cucumber (PI 183967)	cpimedB151
MELO3C032939.2	Wild cucumber (PI 183967)	cpimedB493
MELO3C032939.2	Wild cucumber (PI 183967)	cpimedB561
MELO3C032939.2	Cucumber (Chinese Long) v2	cumedB149
MELO3C032939.2	Cucumber (Chinese Long) v2	cumedB151
MELO3C032939.2	Cucumber (Chinese Long) v2	cumedB483
MELO3C032939.2	Bottle gourd (USVL1VR-Ls)	lsimedB127
MELO3C032939.2	Melon (DHL92) v3.6.1	medmedB128
MELO3C032939.2	Bottle gourd (USVL1VR-Ls)	lsimedB083
MELO3C032939.2	Bottle gourd (USVL1VR-Ls)	lsimedB163
MELO3C032939.2	Bottle gourd (USVL1VR-Ls)	lsimedB349
MELO3C032939.2	Bottle gourd (USVL1VR-Ls)	lsimedB510
MELO3C032939.2	Watermelon (Charleston Gray)	medwcgB500
MELO3C032939.2	Watermelon (Charleston Gray)	medwcgB509
MELO3C032939.2	Watermelon (Charleston Gray)	medwcgB513
MELO3C032939.2	Watermelon (Charleston Gray)	medwcgB543
MELO3C032939.2	Watermelon (97103) v1	medwmB538
MELO3C032939.2	Watermelon (97103) v1	medwmB546
MELO3C032939.2	Watermelon (97103) v1	medwmB559
MELO3C032939.2	Watermelon (97103) v1	medwmB579
MELO3C032939.2	Silver-seed gourd	carmedB0192
MELO3C032939.2	Silver-seed gourd	carmedB0418
MELO3C032939.2	Silver-seed gourd	carmedB0818
MELO3C032939.2	Silver-seed gourd	carmedB0889
MELO3C032939.2	Cucumber (Chinese Long) v3	cucmedB150
MELO3C032939.2	Cucumber (Chinese Long) v3	cucmedB505
MELO3C032939.2	Watermelon (97103) v2	medwmbB505
MELO3C032939.2	Watermelon (97103) v2	medwmbB548
MELO3C032939.2	Watermelon (97103) v2	medwmbB553