MELO3C030906.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C030906.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionMyb/SANT-like DNA-binding domain protein
Locationchr04 : 22191732 .. 22192482 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGCCTTTTGTTTATGACTATTAAATGTGAAATTGTGAAATTACTAACGTACTCCATGTATTTCTTGTAATTTGTCATTCTCAGTATGCAACCTCAAACCGTGCCCTGAGACATGTTTGGACTAAGGAGAAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATTGGGGGATGGAAATCGGATAATGGTACATTCCGGCTAGGTTACTTGGCCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCTGCGCAAAGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGGACATTCTAGGCCATTGCCGAAATGCGGGGGCCAGTGTGTAGTGGCTTTGGGTGGAACGATAAACAGAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGGTAAAGAAAATAATATAAATGTTACACAATGTTCGCAATTTTTATATCAATACTCATAAGTGATCTTTTTTTTCCCCGCAGTTGCATCCTGCAGCGAAGGGATTCCTGAACAAACTGTTTTCGTATTATAACGAACTTACATATGTGTTTGGTCGCGATAAGGCAACGGGTCAGTTCGCTGAGACATTCGCCGACGTTTGGGTCTAACGAGCCTGGCGGGTATGATGGATTTGATATGGCAGATGGAAACGAGGAGTTCCCGCCTGTGTACAGCCAGGAGATTGACCTGTCGTAGGACGACCTTCTCGCGCTTCAGAGGGTAGGACC

mRNA sequence

TGTGCCTTTTGTTTATGACTATTAAATGTGAAATTGTGAAATTACTAACGTACTCCATGTATTTCTTGTAATTTGTCATTCTCAGTATGCAACCTCAAACCGTGCCCTGAGACATGTTTGGACTAAGGAGAAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATTGGGGGATGGAAATCGGATAATGGTACATTCCGGCTAGGTTACTTGGCCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCTGCGCAAAGACTGTAATTGACTGTAGAATAAAGACACTGAAGCGGACATTCTAGGCCATTGCCGAAATGCGGGGGCCAGTGTGTAGTGGCTTTGGGTGGAACGATAAACAGAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTTGCATCCTGCAGCGAAGGGATTCCTGAACAAACTGTTTTCGTATTATAACGAACTTACATATGTGTTTGGTCGCGATAAGGCAACGGGTCAGTTCGCTGAGACATTCGCCGACGTTTGGGTCTAACGAGCCTGGCGGGTATGATGGATTTGATATGGCAGATGGAAACGAGGAGTTCCCGCCTGTGTACAGCCAGGAGATTGACCTGTCGTAGGACGACCTTCTCGCGCTTCAGAGGGTAGGACC

Coding sequence (CDS)

ATGCGGGGGCCAGTGTGTAGTGGCTTTGGGTGGAACGATAAACAGAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTAGGTTGCATCCTGCAGCGAAGGGATTCCTGAACAAACTGTTTTCGTATTATAACGAACTTACATATGTGTTTGGTCGCGATAAGGCAACGGGTCAGTTCGCTGAGACATTCGCCGACGTTTGGGTCTAA

Protein sequence

MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATGQFAETFADVWV
Homology
[Close]
BLAST of MELO3C030906.2 vs. NCBI nr
Match: XP_016899497.1 (PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 1.6e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           MRGP CSG GWNDK+KCIIAEK LFDNWVR +PAAK  LNKLF YY+ELTYVFGRDKATG
Sbjct: 34  MRGPACSGLGWNDKEKCIIAEKGLFDNWVRSYPAAKELLNKLFPYYDELTYVFGRDKATG 93

Query: 61  QFAETFADV 70
           +FAETFADV
Sbjct: 94  RFAETFADV 102

[Close]
BLAST of MELO3C030906.2 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 127.1 bits (318), Expect = 2.4e-26
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           M GP CSGFGWND++KCI+AEKELFDNWVR  PAAKG LN  F YY+ELTYVFGRD+ATG
Sbjct: 401 MLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATG 460

Query: 61  QFAETFADV 70
           +FAETFADV
Sbjct: 461 RFAETFADV 469

[Close]
BLAST of MELO3C030906.2 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 48/69 (69.57%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           MRGP CSGFGWND++KCI+AEKE+FD+WV+ HP AKG LNK F +Y+EL+YVFG+D+ATG
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATG 138

Query: 61  QFAETFADV 70
             AE+FAD+
Sbjct: 139 GRAESFADI 147

[Close]
BLAST of MELO3C030906.2 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 111.3 bits (277), Expect = 1.4e-21
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           MRGP CSGFGWND++KCI+AEKE+FD+W   HPAAKG LNK F +Y+EL+YVFG+D+ATG
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATG 497

Query: 61  QFAETFADV 70
             AE+FAD+
Sbjct: 498 GRAESFADI 504

[Close]
BLAST of MELO3C030906.2 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 3.9e-21
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           MRGP CSGFGWN++ +CIIAE++LFD+W++ HPAAKG L+K F YY++L+YVFG+D+ATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  QFAETFADV 70
             +ETF +V
Sbjct: 144 ARSETFPNV 152

[Close]
BLAST of MELO3C030906.2 vs. TAIR10
Match: AT5G27260.1 (unknown protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.3e-06
Identity = 21/62 (33.87%), Postives = 33/62 (53.23%), Query Frame = 0 

Query: 7   SGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATGQFAETF 66
           SGFGW+   K   A  E++ ++++ HP  K      F +++EL  +FG   ATG+ A   
Sbjct: 92  SGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAIGL 151

Query: 67  AD 69
            D
Sbjct: 152 CD 153

[Close]
BLAST of MELO3C030906.2 vs. TAIR10
Match: AT4G02210.1 (unknown protein)

HSP 1 Score: 41.2 bits (95), Expect = 3.1e-04
Identity = 14/61 (22.95%), Postives = 35/61 (57.38%), Query Frame = 0 

Query: 8   GFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATGQFAETFA 67
           GF W+D ++ ++A+  ++D ++++HP ++ F  K    Y +L  V+    +  +  E+ +
Sbjct: 88  GFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLCLVYSDGMSEHKAEESIS 147

Query: 68  D 69
           +
Sbjct: 148 E 148

[Close]
BLAST of MELO3C030906.2 vs. TrEMBL
Match: tr|A0A1S4DU21|A0A1S4DU21_CUCME (uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-27
Identity = 58/69 (84.06%), Postives = 62/69 (89.86%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           MRGP CSG GWNDK+KCIIAEK LFDNWVR +PAAK  LNKLF YY+ELTYVFGRDKATG
Sbjct: 34  MRGPACSGLGWNDKEKCIIAEKGLFDNWVRSYPAAKELLNKLFPYYDELTYVFGRDKATG 93

Query: 61  QFAETFADV 70
           +FAETFADV
Sbjct: 94  RFAETFADV 102

[Close]
BLAST of MELO3C030906.2 vs. TrEMBL
Match: tr|E5GBB2|E5GBB2_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.6e-26
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           M GP CSGFGWND++KCI+AEKELFDNWVR  PAAKG LN  F YY+ELTYVFGRD+ATG
Sbjct: 401 MLGPACSGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATG 460

Query: 61  QFAETFADV 70
           +FAETFADV
Sbjct: 461 RFAETFADV 469

[Close]
BLAST of MELO3C030906.2 vs. TrEMBL
Match: tr|A0A1S3CTN6|A0A1S3CTN6_CUCME (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.6e-23
Identity = 48/69 (69.57%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           MRGP CSGFGWND++KCI+AEKE+FD+WV+ HP AKG LNK F +Y+EL+YVFG+D+ATG
Sbjct: 79  MRGPNCSGFGWNDEKKCIVAEKEVFDDWVKSHPTAKGLLNKSFVHYDELSYVFGKDRATG 138

Query: 61  QFAETFADV 70
             AE+FAD+
Sbjct: 139 GRAESFADI 147

[Close]
BLAST of MELO3C030906.2 vs. TrEMBL
Match: tr|E5GCB5|E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 8.9e-22
Identity = 48/69 (69.57%), Postives = 60/69 (86.96%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           MRGP CSGFGWND++KCI+AEKE+FD+W   HPAAKG LNK F +Y+EL+YVFG+D+ATG
Sbjct: 438 MRGPNCSGFGWNDEKKCIVAEKEVFDDW--SHPAAKGLLNKSFVHYDELSYVFGKDRATG 497

Query: 61  QFAETFADV 70
             AE+FAD+
Sbjct: 498 GRAESFADI 504

[Close]
BLAST of MELO3C030906.2 vs. TrEMBL
Match: tr|A0A1S3B4L3|A0A1S3B4L3_CUCME (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.6e-21
Identity = 44/69 (63.77%), Postives = 60/69 (86.96%), Query Frame = 0 

Query: 1   MRGPVCSGFGWNDKQKCIIAEKELFDNWVRLHPAAKGFLNKLFSYYNELTYVFGRDKATG 60
           MRGP CSGFGWN++ +CIIAE++LFD+W++ HPAAKG L+K F YY++L+YVFG+D+ATG
Sbjct: 84  MRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATG 143

Query: 61  QFAETFADV 70
             +ETF +V
Sbjct: 144 ARSETFPNV 152

The following BLAST results are available for this feature:
BLAST of MELO3C030906.2 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016899497.11.6e-2784.06PREDICTED: uncharacterized protein LOC107990554 [Cucumis melo][more]
ADN33754.12.4e-2679.71retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008466949.12.5e-2369.57PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo][more]
ADN34114.11.4e-2169.57retrotransposon protein [Cucumis melo subsp. melo][more]
XP_008441954.13.9e-2163.77PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo][more]
BLAST of MELO3C030906.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G27260.14.3e-0633.87unknown protein[more]
AT4G02210.13.1e-0422.95unknown protein[more]
BLAST of MELO3C030906.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C030906.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4DU21|A0A1S4DU21_CUCME1.1e-2784.06uncharacterized protein LOC107990554 OS=Cucumis melo OX=3656 GN=LOC107990554 PE=... [more]
tr|E5GBB2|E5GBB2_CUCME1.6e-2679.71Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3CTN6|A0A1S3CTN6_CUCME1.6e-2369.57uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=... [more]
tr|E5GCB5|E5GCB5_CUCME8.9e-2269.57Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
tr|A0A1S3B4L3|A0A1S3B4L3_CUCME2.6e-2163.77uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C030906.2.1MELO3C030906.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31704:SF62SUBFAMILY NOT NAMEDcoord: 6..69
NoneNo IPR availablePANTHERPTHR31704FAMILY NOT NAMEDcoord: 6..69

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C030906.2Cucumber (Chinese Long) v3cucmedB208
MELO3C030906.2Watermelon (97103) v2medwmbB339
MELO3C030906.2Cucumber (Gy14) v2cgybmedB183
MELO3C030906.2Wild cucumber (PI 183967)cpimedB206
MELO3C030906.2Cucumber (Chinese Long) v2cumedB204
MELO3C030906.2Watermelon (Charleston Gray)medwcgB344