MELO3C030437.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030437.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Disease resistance protein
Location	chr04 : 8245366 .. 8245763 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAATTCCTTTGGACTTTTGCTGTTTAGGAAGTCTTAAAGAAGATCGTGAAATTTGAAGCTCAACAAATTGGGTTAGCATGGGGATTAGAGAAGAAGAAGCTGTCCAATTTGAGAAATTGGTTACTTAAAGCTGAAATAATCTTAGTAGACATTAACAGAAAGAAGTTACAAAACGATTCTATGAGGCTATGGGTGAAAGAACTTCAAGATATTGTCTACGAAGCTGATGATCTACTGAATCAGCTTGTTTATGAAGATCTTCGAACAACTGCGGAACAAACTGAAAATTTGAGAAAGGTACGTGATTTTATTTTCATCCTACTATCTAAAAATCCCTTCTTGTTTCGTTGCTAGAAGGCCAAGAAAATGAAGAACATTACTTAAACTTTATA

mRNA sequence

ATGGTTGAATTCCTTTGGACTTTTGCTGTTTAGGAAGTCTTAAAGAAGATCGTGAAATTTGAAGCTCAACAAATTGGGTTAGCATGGGGATTAGAGAAGAAGAAGCTGTCCAATTTGAGAAATTGGTTACTTAAAGCTGAAATAATCTTAGTAGACATTAACAGAAAGAAGTTACAAAACGATTCTATGAGGCTATGGGTGAAAGAACTTCAAGATATTGTCTACGAAGCTGATGATCTACTGAATCAGCTTGTTTATGAAGATCTTCGAACAACTGCGGAACAAACTGAAAATTTGAGAAAGGTACGTGATTTTATTTTCATCCTACTATCTAAAAATCCCTTCTTGTTTCGTTGCTAGAAGGCCAAGAAAATGAAGAACATTACTTAAACTTTATA

Coding sequence (CDS)

ATGAGGCTATGGGTGAAAGAACTTCAAGATATTGTCTACGAAGCTGATGATCTACTGAATCAGCTTGTTTATGAAGATCTTCGAACAACTGCGGAACAAACTGAAAATTTGAGAAAGGTACGTGATTTTATTTTCATCCTACTATCTAAAAATCCCTTCTTGTTTCGTTGCTAG

Protein sequence

MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFRC

Homology

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BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_004140442.1 (PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN50811.1 hypothetical protein Csa_5G266890 [Cucumis sativus])

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-08
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 3   LWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLF 56
           LWV+EL DI+YEADDLL+++VYE +R T EQT  LRKVRD   I  SKN FLF
Sbjct: 64  LWVEELHDIIYEADDLLDEIVYEQIRQTVEQTGKLRKVRD--SISPSKNSFLF 114

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BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_022145171.1 (putative disease resistance protein RGA3 [Momordica charantia] >XP_022145172.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145173.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145174.1 putative disease resistance protein RGA3 [Momordica charantia] >XP_022145175.1 putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           +RLWV++LQ +VY+ADDLL++LVYEDLR   E  E + KVR+  F  L+ NPFLFR
Sbjct: 62  VRLWVEDLQHLVYQADDLLDELVYEDLRRKVE-IEKINKVRN--FFSLTNNPFLFR 114

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BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_022145229.1 (putative disease resistance protein RGA4 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 9.9e-07
Identity = 33/56 (58.93%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           +RLWV++LQ +VY+ADDLL+ LVYEDLR   E  E + KVR+  F+  S NPFLFR
Sbjct: 62  VRLWVEDLQHLVYQADDLLDDLVYEDLRQKVEM-EKINKVRN--FLSPSNNPFLFR 114

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BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_004136783.2 (PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN59485.1 hypothetical protein Csa_3G822360 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 8.3e-06
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           ++ WV++L+DIV+EADDLL++LVYE LR T E TE   KV D   I  S N FLFR
Sbjct: 62  VKRWVEKLEDIVHEADDLLDELVYEHLRRTVEHTEKFSKVSD--SISSSINSFLFR 115

[Close]

BLAST of MELO3C030437.2 vs. NCBI nr
Match: XP_022150842.1 (putative disease resistance protein RGA3 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           +RLWV +LQD+V+EA+DLL++LVYEDLR    QT  ++KVR+  F+  S N F+FR
Sbjct: 62  VRLWVDKLQDLVHEAEDLLDELVYEDLRRKV-QTAKMKKVRN--FLSPSNNAFVFR 114

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BLAST of MELO3C030437.2 vs. TrEMBL
Match: tr|A0A0A0KST5|A0A0A0KST5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266890 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 3   LWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLF 56
           LWV+EL DI+YEADDLL+++VYE +R T EQT  LRKVRD   I  SKN FLF
Sbjct: 64  LWVEELHDIIYEADDLLDEIVYEQIRQTVEQTGKLRKVRD--SISPSKNSFLF 114

[Close]

BLAST of MELO3C030437.2 vs. TrEMBL
Match: tr|A0A0A0LBV0|A0A0A0LBV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-06
Identity = 32/56 (57.14%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTENLRKVRDFIFILLSKNPFLFR 57
           ++ WV++L+DIV+EADDLL++LVYE LR T E TE   KV D   I  S N FLFR
Sbjct: 62  VKRWVEKLEDIVHEADDLLDELVYEHLRRTVEHTEKFSKVSD--SISSSINSFLFR 115

[Close]

BLAST of MELO3C030437.2 vs. TrEMBL
Match: tr|A0A2P4K1L9|A0A2P4K1L9_QUESU (Putative disease resistance protein rga3 OS=Quercus suber OX=58331 GN=CFP56_24885 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.4e-04
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 1   MRLWVKELQDIVYEADDLLNQLVYEDLRTTAEQTEN-LRKVRDFIFILLSKNPFLFR 57
           ++LW+++L+D+ YEADD+L++  YE+LR   E   N  RKVRD   I  + NPFLFR
Sbjct: 54  VKLWLQKLEDVAYEADDVLDEFAYENLRQKIEVGNNRKRKVRD---ICSTSNPFLFR 107

The following BLAST results are available for this feature:

BLAST of MELO3C030437.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140442.1	2.3e-08	66.04	PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN50811.1 hy...	[more]
XP_022145171.1	3.4e-07	58.93	putative disease resistance protein RGA3 [Momordica charantia] >XP_022145172.1 p...	[more]
XP_022145229.1	9.9e-07	58.93	putative disease resistance protein RGA4 [Momordica charantia]	[more]
XP_004136783.2	8.3e-06	57.14	PREDICTED: disease resistance protein RGA2-like [Cucumis sativus] >KGN59485.1 hy...	[more]
XP_022150842.1	1.1e-05	55.36	putative disease resistance protein RGA3 [Momordica charantia]	[more]

BLAST of MELO3C030437.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C030437.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030437.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KST5\|A0A0A0KST5_CUCSA	1.6e-08	66.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G266890 PE=3 SV=1	[more]
tr\|A0A0A0LBV0\|A0A0A0LBV0_CUCSA	5.5e-06	57.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822360 PE=3 SV=1	[more]
tr\|A0A2P4K1L9\|A0A2P4K1L9_QUESU	1.4e-04	49.12	Putative disease resistance protein rga3 OS=Quercus suber OX=58331 GN=CFP56_2488...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030437.2.1	MELO3C030437.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030437.2	Watermelon (97103) v2	medwmbB310
MELO3C030437.2	Wax gourd	medwgoB438
MELO3C030437.2	Cucumber (Gy14) v2	cgybmedB186
MELO3C030437.2	Cucumber (Gy14) v1	cgymedB560
MELO3C030437.2	Cucurbita maxima (Rimu)	cmamedB032
MELO3C030437.2	Cucurbita maxima (Rimu)	cmamedB491
MELO3C030437.2	Cucurbita moschata (Rifu)	cmomedB021
MELO3C030437.2	Cucurbita moschata (Rifu)	cmomedB478
MELO3C030437.2	Cucurbita pepo (Zucchini)	cpemedB617
MELO3C030437.2	Cucurbita pepo (Zucchini)	cpemedB860
MELO3C030437.2	Wild cucumber (PI 183967)	cpimedB209
MELO3C030437.2	Cucumber (Chinese Long) v2	cumedB208
MELO3C030437.2	Bottle gourd (USVL1VR-Ls)	lsimedB326
MELO3C030437.2	Watermelon (Charleston Gray)	medwcgB314
MELO3C030437.2	Watermelon (97103) v1	medwmB378
MELO3C030437.2	Silver-seed gourd	carmedB0321
MELO3C030437.2	Silver-seed gourd	carmedB0898
MELO3C030437.2	Cucumber (Chinese Long) v3	cucmedB212