MELO3C030208.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C030208.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	protein PRD1 isoform X2
Location	chr03 : 17829408 .. 17831675 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTTGAGTTCCCACCCCCAATTGTTGTTGGAAAAAAAGAGGGAAAAGAAAAAAGAGACAAGAAAAAGAAACCTACGGTTCGTATTTTGCCTATTCAAACATACTTTCTAGTTTTCCAACTTTTAGCCTTGTGCTCATTAATATAGTAATTGATTATTACCTTAATTATCATTTTAGAAAGTTTAATATAAGCCTGGTCTCTTCTTTTCAGACTTGCAGGAAGCATATCTACTATGAGAAAGATGAGGATACTCAAACAGAGAGAGAAATCGGGAATGTGTTTGCTAACGTGGATGACGATCTGGGAGAAGTTTGTGAGTATCTTAATCACTTAATTCAATCATATTCACAGAAGAATAAAAGATTATTGAAGGAGATAGAGATGTTTTTTACGGCTTTAGCAGAGAAGGAGACTAGCTGAACTGTCAACTACTCTTCGTTGATTCAAGTGAAGTAATAAATCATTAAATATACACCAAATTTAGAACACACAAAAACAATGTTCATAACTCTGAGCATATAAAATTCCCCTTGGTAAGTTTTCATGCAAAAGCTGTCTTGGTTGTTAATGAACAGTCAAATCCCTTGAAAAGTTAAATTTTTTTATGTAGTTATAAGTTAGTGTATTGGGTAAGTCCAGTTGGCCTTGCCTTTCAATAACTAGATCAATGAGTTCTTCATATGCTCAAATTGTATTTTCCATATCCTCAGGTTCTAGAGAAGTGTATACCATTTCCCATTTTTTTTAGGAATTTCTCGTTTCCAAATGCTTGACAAACAAGCGAGTCCGCGTTCATCTCCACTGCTCTAGAAAGTAAGTTCATCTTTGTACCTTCCTCAAAAATTTCGGTGCCATCATATCTTTTGACATTTTCATCTAATGGAATTCCAATGGTTACTCTATGAGGTTTGAGACGTCTTCTCGTATTCTAGAGACACAGCAACTTAAATTTTTTCATTTTCAAATAAGCTTGGAGTATAAATTATAATGTTTGCAAACTGTCACATTGCAAATTTCATTAACATTTAAAATTTCCTAAACAGAGTTCATACCCCTTCGACTTTATTGACAAGCATATGACAGGTACCAAACAAGAATTGTCTTTCTAGTTTTGATGTACAGTTCGATACCCAAGGTGACCAATCTTGAATATATATGGTTATATATATGGTTATGTATATGAATGTGAGTCGGTGTTCATCCTACTTCATATTGATCTTTGAGTTATGGATTCTTCCATAAGAACATTTTCATTTTATCTAATATAACCAAATTAGGCATAAGCTTCCTACATTATAACCAAGGTACATGACAGTAAATCCATTCTTTTAGATAGAATCGTTTGGTACAATCCTTCCACCTTTTTAAGCTAGCTACCCTTAGAGTACTCTTTGATAAGCAAATTGTAAGTTATTTGGTTGGGAAAACATCCACCCAATTTCGTCTATATTTATATTTCAGACACTCAGACCATCGCATCATACATTCTAGAATTTCCATAAGCTTCAATTAGGCGATCATTGGTAACCTCTTCATATCGTATTGATTTCTTTCTAGTCTCCATAGTCTAAAGTAATATAAAAGGATAGGAACCTCTTTTCTAGAGGTCAGAAAGCAGTGCTTTTGCCTTTAACGATAACTAAGGGTTAAGAAACGTGCCCTCTTATAGATGAATGAATCTCCCATTCAGACCTTCATTCATCCATAAAGGATTTTACACGTGTCAACAATAATTTACAAAATGGAAAGAAAACAAGAGTGACGGACATTACAAGACCCTTGAAAGACATCTTATCTCTTTGGAATCTTTCTTTCTGAAAGGATAAGATTACGACAGGATTTGGTGGGATAGGACCCTATCCTTATCTCTTTCTAATCTAAAAAGAAAAAGTCGAAATACAAAAGTAAAACAAACTAAAGCTAAAAAGATATGTTTGTATTTGTTCTTAAGTCTTTCTCGATATCATCTCTCCACAATAGTGATGATATCACCCGACTTTGTCTAAATGGCCTCCATATGTCATCAGTATTAATTTCGTAAAATCTTTGGAATTGGATACATCCAGGGACTTAATCTTGACTTTTCTGTCAAAAGCTGCCCAAGCATCTTAATCCTTTTGAATTTATTGGATTAATTGGACGTGGTAGGTTTTCCTATCTGGAATCAATCCTCGCGAACGACGTTGACCTGTGGGTGGTCACTCCACTTAAGTCGCTTGCCATCTCCATCACCTCCCCTTATTTTGATTATCTTAATTGA

mRNA sequence

ATGGCCAAATTTGAGTTCCCACCCCCAATTGTTGTTGGAAAAAAAGAGGGAAAAGAAAAAAGAGACAAGAAAAAGAAACCTACGACTTGCAGGAAGCATATCTACTATGAGAAAGATGAGGATACTCAAACAGAGAGAGAAATCGGGAATGTGTTTGCTAACGTGGATGACGATCTGGGAGAAGAATTTCTCGTTTCCAAATGCTTGACAAACAAGCGAGTCCGCGTTCATCTCCACTGCTCTAGAAAGTTTTCCTATCTGGAATCAATCCTCGCGAACGACGTTGACCTGTGGGTGGTCACTCCACTTAAGTCGCTTGCCATCTCCATCACCTCCCCTTATTTTGATTATCTTAATTGA

Coding sequence (CDS)

ATGGCCAAATTTGAGTTCCCACCCCCAATTGTTGTTGGAAAAAAAGAGGGAAAAGAAAAAAGAGACAAGAAAAAGAAACCTACGACTTGCAGGAAGCATATCTACTATGAGAAAGATGAGGATACTCAAACAGAGAGAGAAATCGGGAATGTGTTTGCTAACGTGGATGACGATCTGGGAGAAGAATTTCTCGTTTCCAAATGCTTGACAAACAAGCGAGTCCGCGTTCATCTCCACTGCTCTAGAAAGTTTTCCTATCTGGAATCAATCCTCGCGAACGACGTTGACCTGTGGGTGGTCACTCCACTTAAGTCGCTTGCCATCTCCATCACCTCCCCTTATTTTGATTATCTTAATTGA

Protein sequence

MAKFEFPPPIVVGKKEGKEKRDKKKKPTTCRKHIYYEKDEDTQTEREIGNVFANVDDDLGEEFLVSKCLTNKRVRVHLHCSRKFSYLESILANDVDLWVVTPLKSLAISITSPYFDYLN

Homology

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BLAST of MELO3C030208.2 vs. NCBI nr
Match: XP_008464335.1 (PREDICTED: protein PRD1 isoform X1 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 30   CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 62
            CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1208 CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1239

[Close]

BLAST of MELO3C030208.2 vs. NCBI nr
Match: XP_008464336.1 (PREDICTED: protein PRD1 isoform X2 [Cucumis melo] >XP_016903184.1 PREDICTED: protein PRD1 isoform X3 [Cucumis melo])

HSP 1 Score: 71.2 bits (173), Expect = 2.6e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 30   CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 62
            CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1208 CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1239

[Close]

BLAST of MELO3C030208.2 vs. NCBI nr
Match: XP_011656475.1 (PREDICTED: protein PRD1 isoform X1 [Cucumis sativus] >KGN45916.1 hypothetical protein Csa_6G022280 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 30   CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 62
            CRKHIY EKD DTQTE+EIGNVFANVDDDLGE
Sbjct: 1208 CRKHIYNEKDGDTQTEKEIGNVFANVDDDLGE 1239

[Close]

BLAST of MELO3C030208.2 vs. NCBI nr
Match: XP_011656476.1 (PREDICTED: protein PRD1 isoform X2 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 4.1e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 30   CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 62
            CRKHIY EKD DTQTE+EIGNVFANVDDDLGE
Sbjct: 1205 CRKHIYNEKDGDTQTEKEIGNVFANVDDDLGE 1236

[Close]

BLAST of MELO3C030208.2 vs. TrEMBL
Match: tr|A0A1S4E4N2|A0A1S4E4N2_CUCME (protein PRD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 30   CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 62
            CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1208 CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1239

[Close]

BLAST of MELO3C030208.2 vs. TrEMBL
Match: tr|A0A1S3CLC8|A0A1S3CLC8_CUCME (protein PRD1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.7e-09
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 30   CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 62
            CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE
Sbjct: 1208 CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 1239

[Close]

BLAST of MELO3C030208.2 vs. TrEMBL
Match: tr|A0A0A0KDQ9|A0A0A0KDQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022280 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 29/32 (90.62%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 30   CRKHIYYEKDEDTQTEREIGNVFANVDDDLGE 62
            CRKHIY EKD DTQTE+EIGNVFANVDDDLGE
Sbjct: 1208 CRKHIYNEKDGDTQTEKEIGNVFANVDDDLGE 1239

The following BLAST results are available for this feature:

BLAST of MELO3C030208.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464335.1	2.6e-09	100.00	PREDICTED: protein PRD1 isoform X1 [Cucumis melo]	[more]
XP_008464336.1	2.6e-09	100.00	PREDICTED: protein PRD1 isoform X2 [Cucumis melo] >XP_016903184.1 PREDICTED: pro...	[more]
XP_011656475.1	4.1e-07	90.63	PREDICTED: protein PRD1 isoform X1 [Cucumis sativus] >KGN45916.1 hypothetical pr...	[more]
XP_011656476.1	4.1e-07	90.63	PREDICTED: protein PRD1 isoform X2 [Cucumis sativus]	[more]

BLAST of MELO3C030208.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C030208.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C030208.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E4N2\|A0A1S4E4N2_CUCME	1.7e-09	100.00	protein PRD1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1	[more]
tr\|A0A1S3CLC8\|A0A1S3CLC8_CUCME	1.7e-09	100.00	protein PRD1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502245 PE=4 SV=1	[more]
tr\|A0A0A0KDQ9\|A0A0A0KDQ9_CUCSA	2.7e-07	90.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G022280 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C030208.2.1	MELO3C030208.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C030208.2	Csa6G022280	Cucumber (Chinese Long) v2	cumedB455
MELO3C030208.2	CSPI06G02820	Wild cucumber (PI 183967)	cpimedB464
MELO3C030208.2	Cucsa.365660	Cucumber (Gy14) v1	cgymedB588
MELO3C030208.2	CsGy6G002910	Cucumber (Gy14) v2	cgybmedB413
MELO3C030208.2	Bhi04G001658	Wax gourd	medwgoB351

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C030208.2	Bottle gourd (USVL1VR-Ls)	lsimedB498
MELO3C030208.2	Watermelon (Charleston Gray)	medwcgB300
MELO3C030208.2	Silver-seed gourd	carmedB0232
MELO3C030208.2	Cucumber (Chinese Long) v3	cucmedB473
MELO3C030208.2	Cucurbita maxima (Rimu)	cmamedB385
MELO3C030208.2	Cucurbita moschata (Rifu)	cmomedB372
MELO3C030208.2	Cucurbita pepo (Zucchini)	cpemedB158