MELO3C029636.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C029636.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionPhotosystem II CP43 reaction center protein
Locationchr02 : 15742428 .. 15743673 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAATTTCTTTACATATTTGTAATATTAATTCAAATTTATTTTCATATAATAATACTTCGATAAGCCTAAGAACAAGCAAATACATTTGCATCATTTTTAATAGCAAGGTCAAGGGCGAAGACATGTAGGGGCAAGAAGCATTTGTCCCCTTGATTGGTTTAAATTACTTAAATATATTCATTTACATCTAAATATATTTACTATGGCATTTTATATTAACGTCGAAAAGAGTCCTTTGGTGCAGCGGTTGATGGCCCTTCAAACTTATTGTTGTCGCCTTGTGTTGGGAGTTCAAATAGTGTAAGACACCTTTGGCTTTTTTCCCTCTTTTTCTTATCTTTAATGAAACTTTAGCTCTAGCAAGTCATGATCAAGAAACCATCAATTTGTTTGGTAGGTCAAGAATGCCCAACTTATCAAATTATTTGATAAACCATCGAGGGCTCATGGAGCTCATGTCATATTAATCATATTCTCGGTTAGAGCAATTAACCTATTTGAAGTGGCTCAATTTGTACCGGAGAAGCCCATGTATGAACAAGTATTAATTTTACTTCCCCTTAACTACTTTAGGTTAGCGGTAGGCCCTAGTGGATAGGTTATAGACATTTTTCCTTACTTTATGTTTGGAGTGCTTAAGTAATATTCTTTGCAAGATTGGGTTTTTGCAGTATTTATCATGCACTTTTAGGACTCGAGACCCTTGAAGAATATGTTCCATTCTTTAGTTATGTGTATAAAGATATAAATAAAATGACTAGCATTTTGAGTATTCACTTAATTTTATTATGTATAGGTGGTTTTTTTCTAATATTCAAAGTTCTTTCTTTTGAGGGCGTGTATGATACTTGGGCTCAGGGGGTGAGAAGATGCAAGAAAAATTATCAACCTGGCCCTTAGCCCAAGTTATTTGGTTATTTACTAAAATCTCCTTTTGGAAAAGAATGATGGATTGTTAGTATGGGTGATTTTTGAAGATATAGTGGGGACATATATGGTTAGATTCCATTTGTATATTTGGTGGAATTTAGCCTGAGTTCCTAAACCATTTGCATGAGCTTCCTATGCACTTCTTGATAGGAAGAATCTTACTTTTCTTTAGAGTTTAGGTGTTCTATCAGATTTTTGCTTTATTGCTTGCTTTTTTGTCTGGCTCAAGTTCCTTGGTTAGAACAACTGGTCCTAATGGTTTAAACTTCAGTAGATTGAAAAAATATGTAATAGTATCGAAAAGAGTTCTTTAG

mRNA sequence

TTCAATTTCTTTACATATTTGTAATATTAATTCAAATTTATTTTCATATAATAATACTTCGATAAGCCTAAGAACAAGCAAATACATTTGCATCATTTTTAATAGCAAGGTCAAGGGCGAAGACATGTAGGGGCAAGAAGCATTTGTCCCCTTGATTGGTTTAAATTACTTAAATATATTCATTTACATCTAAATATATTTACTATGGCATTTTATATTAACGTCGAAAAGAGTCCTTTGGTGCAGCGGTTGATGGCCCTTCAAACTTATTGTTGTCGCCTTGTGTTGGGAGTTCAAATAGTCAAGAATGCCCAACTTATCAAATTATTTGATAAACCATCGAGGGCTCATGGAGCTCATGTCATATTAATCATATTCTCGGTTAGAGCAATTAACCTATTTGAAGTGGCTCAATTTGTACCGGAGAAGCCCATGTATGAACAAGTGTTCTATCAGATTTTTGCTTTATTGCTTGCTTTTTTGTCTGGCTCAAGTTCCTTGGTTAGAACAACTGGTCCTAATGGTTTAAACTTCAGTAGATTGAAAAAATATGTAATAGTATCGAAAAGAGTTCTTTAG

Coding sequence (CDS)

ATGGCATTTTATATTAACGTCGAAAAGAGTCCTTTGGTGCAGCGGTTGATGGCCCTTCAAACTTATTGTTGTCGCCTTGTGTTGGGAGTTCAAATAGTCAAGAATGCCCAACTTATCAAATTATTTGATAAACCATCGAGGGCTCATGGAGCTCATGTCATATTAATCATATTCTCGGTTAGAGCAATTAACCTATTTGAAGTGGCTCAATTTGTACCGGAGAAGCCCATGTATGAACAAGTGTTCTATCAGATTTTTGCTTTATTGCTTGCTTTTTTGTCTGGCTCAAGTTCCTTGGTTAGAACAACTGGTCCTAATGGTTTAAACTTCAGTAGATTGAAAAAATATGTAATAGTATCGAAAAGAGTTCTTTAG

Protein sequence

MAFYINVEKSPLVQRLMALQTYCCRLVLGVQIVKNAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVFYQIFALLLAFLSGSSSLVRTTGPNGLNFSRLKKYVIVSKRVL
Homology
[Close]
BLAST of MELO3C029636.2 vs. NCBI nr
Match: AHI87523.1 (photosystem II 44 kDa apoprotein (chloroplast) [Chionographis japonica])

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQ 81
          NA+LI LF K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ
Sbjct: 39 NARLINLFGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQ 84

[Close]
BLAST of MELO3C029636.2 vs. NCBI nr
Match: YP_009136989.1 (photosystem II CP43 protein (chloroplast) [Adenophora remotiflora] >AKE32212.1 photosystem II CP43 protein (chloroplast) [Adenophora remotiflora])

HSP 1 Score: 59.3 bits (142), Expect = 1.1e-05
Identity = 37/73 (50.68%), Postives = 42/73 (57.53%), Query Frame = 0 

Query: 35  NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVFYQIFALLLAFLS 94
           NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ         L  L 
Sbjct: 39  NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQG--------LILLP 98

Query: 95  GSSSLVRTTGPNG 108
            S++L    GP G
Sbjct: 99  HSATLGWGVGPGG 103

[Close]
BLAST of MELO3C029636.2 vs. NCBI nr
Match: PHT94645.1 (Photosystem II CP43 reaction center protein [Capsicum annuum])

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQ 81
          NA+L+ L  K   AH AHV LI+F   A+NLFEVA FVPEKPMYEQ
Sbjct: 27 NARLVNLSGKLLGAHVAHVGLIVFWAGAMNLFEVAHFVPEKPMYEQ 72

[Close]
BLAST of MELO3C029636.2 vs. NCBI nr
Match: AAN04608.1 (photosystem II CP43 protein, partial (chloroplast) [Pinguicula gracilis])

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-05
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVF 83
          NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ F
Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGF 86

[Close]
BLAST of MELO3C029636.2 vs. NCBI nr
Match: AAN32522.1 (photosystem II CP43 protein, partial (chloroplast) [Triantha glutinosa])

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-05
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVF 83
          NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ F
Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGF 86

[Close]
BLAST of MELO3C029636.2 vs. TAIR10
Match: ATCG00280.1 (photosystem II reaction center protein C)

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-09
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQ 81
          NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ
Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQ 84

[Close]
BLAST of MELO3C029636.2 vs. Swiss-Prot
Match: sp|Q20EU6|PSBC_OLTVI (Photosystem II CP43 reaction center protein OS=Oltmannsiellopsis viridis OX=51324 GN=psbC PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-08
Identity = 37/73 (50.68%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 35  NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVFYQIFALLLAFLS 94
           NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ         L  L 
Sbjct: 27  NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQG--------LILLP 86

Query: 95  GSSSLVRTTGPNG 108
             +SL    GP G
Sbjct: 87  HIASLGYGVGPGG 91

[Close]
BLAST of MELO3C029636.2 vs. Swiss-Prot
Match: sp|Q06FW0|PSBC_PELHO (Photosystem II CP43 reaction center protein OS=Pelargonium hortorum OX=4031 GN=psbC PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-08
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVF 83
          NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ F
Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGF 86

[Close]
BLAST of MELO3C029636.2 vs. Swiss-Prot
Match: sp|B2LMI9|PSBC_GUIAB (Photosystem II CP43 reaction center protein OS=Guizotia abyssinica OX=4230 GN=psbC PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQ 81
          NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ
Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFLAGAMNLFEVAHFVPEKPMYEQ 84

[Close]
BLAST of MELO3C029636.2 vs. Swiss-Prot
Match: sp|Q3ZJ43|PSBC_TUPAK (Photosystem II CP43 reaction center protein OS=Tupiella akineta OX=160070 GN=psbC PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.8e-08
Identity = 36/73 (49.32%), Postives = 41/73 (56.16%), Query Frame = 0 

Query: 35  NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVFYQIFALLLAFLS 94
           NA+LI L  K   AH AH  LI+F   A+NLFEVA F+PEKPMYEQ         L  L 
Sbjct: 27  NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFIPEKPMYEQG--------LILLP 86

Query: 95  GSSSLVRTTGPNG 108
             +SL    GP G
Sbjct: 87  HLASLGYGVGPGG 91

[Close]
BLAST of MELO3C029636.2 vs. Swiss-Prot
Match: sp|Q8HB52|PSBC_ABIAL (Photosystem II CP43 reaction center protein OS=Abies alba OX=45372 GN=psbC PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.0e-07
Identity = 30/46 (65.22%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQ 81
          NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ
Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQ 84

[Close]
BLAST of MELO3C029636.2 vs. TrEMBL
Match: tr|W6CL67|W6CL67_9LILI (Photosystem II CP43 reaction center protein OS=Chionographis japonica OX=119999 GN=psbC PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-06
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQ 81
          NA+LI LF K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ
Sbjct: 39 NARLINLFGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQ 84

[Close]
BLAST of MELO3C029636.2 vs. TrEMBL
Match: tr|A0A0F6QQA3|A0A0F6QQA3_9ASTR (Photosystem II CP43 reaction center protein OS=Adenophora remotiflora OX=103991 GN=psbC PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.0e-06
Identity = 37/73 (50.68%), Postives = 42/73 (57.53%), Query Frame = 0 

Query: 35  NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVFYQIFALLLAFLS 94
           NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ         L  L 
Sbjct: 39  NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQG--------LILLP 98

Query: 95  GSSSLVRTTGPNG 108
            S++L    GP G
Sbjct: 99  HSATLGWGVGPGG 103

[Close]
BLAST of MELO3C029636.2 vs. TrEMBL
Match: tr|A0A2G3AK76|A0A2G3AK76_CAPAN (Photosystem II CP43 reaction center protein OS=Capsicum annuum OX=4072 GN=T459_02527 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.2e-06
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQ 81
          NA+L+ L  K   AH AHV LI+F   A+NLFEVA FVPEKPMYEQ
Sbjct: 27 NARLVNLSGKLLGAHVAHVGLIVFWAGAMNLFEVAHFVPEKPMYEQ 72

[Close]
BLAST of MELO3C029636.2 vs. TrEMBL
Match: tr|B7T3R9|B7T3R9_9ROSI (Photosystem II CP43 reaction center protein OS=Monsonia speciosa OX=163694 GN=psbC PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVF 83
          NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ F
Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGF 86

[Close]
BLAST of MELO3C029636.2 vs. TrEMBL
Match: tr|A0A0G2T353|A0A0G2T353_9ROSI (Photosystem II CP43 reaction center protein OS=Pelargonium echinatum OX=122254 GN=psbC PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0 

Query: 35 NAQLIKLFDKPSRAHGAHVILIIFSVRAINLFEVAQFVPEKPMYEQVF 83
          NA+LI L  K   AH AH  LI+F   A+NLFEVA FVPEKPMYEQ F
Sbjct: 39 NARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGF 86

The following BLAST results are available for this feature:
BLAST of MELO3C029636.2 vs. NCBI nr
Match NameE-valueIdentityDescription
AHI87523.13.7e-0667.39photosystem II 44 kDa apoprotein (chloroplast) [Chionographis japonica][more]
YP_009136989.11.1e-0550.68photosystem II CP43 protein (chloroplast) [Adenophora remotiflora] >AKE32212.1 p... [more]
PHT94645.11.4e-0565.22Photosystem II CP43 reaction center protein [Capsicum annuum][more]
AAN04608.11.8e-0564.58photosystem II CP43 protein, partial (chloroplast) [Pinguicula gracilis][more]
AAN32522.11.8e-0564.58photosystem II CP43 protein, partial (chloroplast) [Triantha glutinosa][more]
BLAST of MELO3C029636.2 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00280.15.6e-0965.22photosystem II reaction center protein C[more]
BLAST of MELO3C029636.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q20EU6|PSBC_OLTVI5.9e-0850.68Photosystem II CP43 reaction center protein OS=Oltmannsiellopsis viridis OX=5132... [more]
sp|Q06FW0|PSBC_PELHO5.9e-0864.58Photosystem II CP43 reaction center protein OS=Pelargonium hortorum OX=4031 GN=p... [more]
sp|B2LMI9|PSBC_GUIAB7.8e-0865.22Photosystem II CP43 reaction center protein OS=Guizotia abyssinica OX=4230 GN=ps... [more]
sp|Q3ZJ43|PSBC_TUPAK7.8e-0849.32Photosystem II CP43 reaction center protein OS=Tupiella akineta OX=160070 GN=psb... [more]
sp|Q8HB52|PSBC_ABIAL1.0e-0765.22Photosystem II CP43 reaction center protein OS=Abies alba OX=45372 GN=psbC PE=3 ... [more]
BLAST of MELO3C029636.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|W6CL67|W6CL67_9LILI2.4e-0667.39Photosystem II CP43 reaction center protein OS=Chionographis japonica OX=119999 ... [more]
tr|A0A0F6QQA3|A0A0F6QQA3_9ASTR7.0e-0650.68Photosystem II CP43 reaction center protein OS=Adenophora remotiflora OX=103991 ... [more]
tr|A0A2G3AK76|A0A2G3AK76_CAPAN9.2e-0665.22Photosystem II CP43 reaction center protein OS=Capsicum annuum OX=4072 GN=T459_0... [more]
tr|B7T3R9|B7T3R9_9ROSI1.2e-0564.58Photosystem II CP43 reaction center protein OS=Monsonia speciosa OX=163694 GN=ps... [more]
tr|A0A0G2T353|A0A0G2T353_9ROSI1.2e-0564.58Photosystem II CP43 reaction center protein OS=Pelargonium echinatum OX=122254 G... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
Vocabulary: INTERPRO
TermDefinition
IPR036001PS_II_antenna-like_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
cellular_component GO:0009523 photosystem II
cellular_component GO:0009536 plastid
cellular_component GO:0009579 thylakoid
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029636.2.1MELO3C029636.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036001Photosystem antenna protein-like superfamilySUPERFAMILYSSF161077Photosystem II antenna protein-likecoord: 35..85