MELO3C029062.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C029062.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like
Location	chr01 : 19128167 .. 19128923 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCGCGGTCTCCTTCTTTCTCCTCAGGGGAATCCTCCCCGTTAAATCAAGGAAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCGTCGTCTGTGGGTAACAATACGAGTGAGTTAAGAATTTTCTTCATTTTAACTTACGGTTATTTCATGTTCTTTTTTCTAACATTATATGTTATTATCGATTTATTAAGTAGGGTCTTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATGTCGTTCGCTTCAGCCAGGCGATAGGCGTGTGCATGCGAAAGACATTTCCTGTCTGCTGCCTTAAGTAGACAGACGTTGGGAGAGAATACATTGAGGTAGTCAAGGGCGACCTCCAGGTAATTAAGTGCACTACACATTTATGATTTCATTTCAAACATATCTAAGTTTAACCAATCTAATGTGTTATGTTTGTAATGTGTAGCGATTGTTTGTACTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGGGCATCATATGCTCACGACCTTTAAAGAGTTCCGGGCCGACTGTCCCAGACATTTCAAAAAGTACAGCGACCAAGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

mRNA sequence

TCCGCGGTCTCCTTCTTTCTCCTCAGGGGAATCCTCCCCGTTAAATCAAGGAAATAATTTTATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCGTCGTCTGTGGGTAACAATACGAGGTCTTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATGTCGTTCGCTTCAGCCAGGCGATAGGCACAGACGTTGGGAGAGAATACATTGAGGTAGTCAAGGGCGACCTCCAGCGATTGTTTGTACTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGGGCATCATATGCTCACGACCTTTAAAGAGTTCCGGGCCGACTGTCCCAGACATTTCAAAAAGTACAGCGACCAAGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

Coding sequence (CDS)

ATGGAGACGGACGCTATGTTCCTCGAGTTTGAGGACGATTTAGATAACATCGCGGAAGGGTCGTCGTCTGTGGGTAACAATACGAGGTCTTCTTCTCAACAACCTATGACTCCGACTCATAGGAGACGTGCAAAGTCTCGACTCTTGGACTTAAAGCACCACGTTGCAATAAATGCACGCATTTCGATGACAATCGCCTCTGGAGCGGAGAAGCCTATTTCTCCACATGTCGTTCGCTTCAGCCAGGCGATAGGCACAGACGTTGGGAGAGAATACATTGAGGTAGTCAAGGGCGACCTCCAGCGATTGTTTGTACTTGATTTCAATGATCAAGCAATGAATAGGTTTGTTGGGCATCATATGCTCACGACCTTTAAAGAGTTCCGGGCCGACTGTCCCAGACATTTCAAAAAGTACAGCGACCAAGAGGAGGCTCGTGCCAACCCACCAAACGCATTGGTTGGACGTCATGAGGATTGA

Protein sequence

METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINARISMTIASGAEKPISPHVVRFSQAIGTDVGREYIEVVKGDLQRLFVLDFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYSDQEEARANPPNALVGRHED

Homology

[Close]

BLAST of MELO3C029062.2 vs. NCBI nr
Match: ADN34071.1 (CACTA en-spm transposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 239.6 bits (610), Expect = 7.4e-60
Identity = 130/173 (75.14%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 1   METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
           METD MFL+FEDDLDNIA GSSSVG+NT SSSQQ  TPT RRRA+SRLL+L+ HVAIN  
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGC 60

Query: 61  ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
           I MTIA GAEKPISP+ V FSQAIG               DVGREYIEVVKGDLQR FVL
Sbjct: 61  IPMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVL 120

Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYSDQEEARANPPNALVGRHED 160
           DFNDQAMNRFV H M+TTFKEF+ DC RHFKKYSD EEARANPPNALVGR ED
Sbjct: 121 DFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C029062.2 vs. NCBI nr
Match: XP_016901035.1 (PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 2.6e-49
Identity = 112/173 (64.74%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
           +ETD MFLEFEDDLDN+A GSSSVG+N  SSSQ P T T RRR +SRLL+L+ HV +   
Sbjct: 9   LETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECHVVVYGC 68

Query: 61  ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
           I M IA GAE PI P+ +RFSQAIG               D+ REYIEVVKG+LQR FVL
Sbjct: 69  IPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVL 128

Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYSDQEEARANPPNALVGRHED 160
           DFNDQA+NRFV H MLTTFKEF  DC RHFK      EARANPPN LVGRHED
Sbjct: 129 DFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C029062.2 vs. NCBI nr
Match: XP_016901155.1 (PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like [Cucumis melo])

HSP 1 Score: 136.0 bits (341), Expect = 1.1e-28
Identity = 82/159 (51.57%), Postives = 96/159 (60.38%), Query Frame = 0


Query: 1   METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
           +ETD MFL+F  DLDN+A GSSS+  N+ SSSQ   T T +R  +SRLL+L+ +V     
Sbjct: 60  LETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELECYV----- 119

Query: 61  ISMTIASGAEKPISPHVVRFSQAIGTDVGREYIEVVKGDLQRLFVLDFNDQAMNRFVGHH 120
                                       GREYIEVVK DLQ  FVLDF+DQAMN  V + 
Sbjct: 120 ---------------------------TGREYIEVVKADLQ-FFVLDFSDQAMNTSVEYQ 179

Query: 121 MLTTFKEFRADCPRHFKKYSDQEEARANPPNALVGRHED 160
           M  TFKEF  DC + FKKYSD EEARANPPN LVGR+ED
Sbjct: 180 MSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNED 185

[Close]

BLAST of MELO3C029062.2 vs. NCBI nr
Match: XP_011648549.1 (PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 55/124 (44.35%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 12  DDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINARISMTIASGAEK 71
           D LDN AEG S VG  T  +SQ  +T T RRR  SR L+L+ ++  N +I ++I    +K
Sbjct: 702 DTLDN-AEGLSLVG-ETSDASQFTLTATLRRRQHSRNLELERYILQNGKILISIPLEGDK 761

Query: 72  PISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVLDFNDQAMNRFV 122
           PISPH +RFS  I                DV +EYIEVVK    + FVLDF D  + RFV
Sbjct: 762 PISPHPIRFSCTIDVLTRDTFPIQILKWVDVPQEYIEVVK----QWFVLDFKDLTLTRFV 819

[Close]

BLAST of MELO3C029062.2 vs. NCBI nr
Match: XP_016902990.1 (PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 1.9e-07
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 1   METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
           +ETD MFLEFED LDN   GSSSVG+N  SSSQQP T T RR  +SRLL L   + +  R
Sbjct: 11  LETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLGL---LRVLTR 70

Query: 61  ISMTIASGAEKPISPHVVRFSQAIGT---DVGREYIEVVKGDLQRLFVL 107
                    + P++ H     QAI T   D+ +  I +   +L  L V+
Sbjct: 71  FDPEHTCLVDVPLTDH----RQAIFTVIKDLNKNKISLAGSELSTLKVI 112

[Close]

BLAST of MELO3C029062.2 vs. TrEMBL
Match: tr|E5GC72|E5GC72_CUCME (CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 4.9e-60
Identity = 130/173 (75.14%), Postives = 138/173 (79.77%), Query Frame = 0


Query: 1   METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
           METD MFL+FEDDLDNIA GSSSVG+NT SSSQQ  TPT RRRA+SRLL+L+ HVAIN  
Sbjct: 1   METDDMFLQFEDDLDNIAGGSSSVGDNTESSSQQ-ATPTPRRRAQSRLLELERHVAINGC 60

Query: 61  ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
           I MTIA GAEKPISP+ V FSQAIG               DVGREYIEVVKGDLQR FVL
Sbjct: 61  IPMTIAPGAEKPISPYAVHFSQAIGVCVRKTFPVRCLKWVDVGREYIEVVKGDLQRFFVL 120

Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYSDQEEARANPPNALVGRHED 160
           DFNDQAMNRFV H M+TTFKEF+ DC RHFKKYSD EEARANPPNALVGR ED
Sbjct: 121 DFNDQAMNRFVEHQMVTTFKEFQVDCHRHFKKYSDPEEARANPPNALVGRDED 172

[Close]

BLAST of MELO3C029062.2 vs. TrEMBL
Match: tr|A0A1S4DZ93|A0A1S4DZ93_CUCME (uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.7e-49
Identity = 112/173 (64.74%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 1   METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
           +ETD MFLEFEDDLDN+A GSSSVG+N  SSSQ P T T RRR +SRLL+L+ HV +   
Sbjct: 9   LETDVMFLEFEDDLDNLAGGSSSVGDNAGSSSQPPATQTPRRRVQSRLLELECHVVVYGC 68

Query: 61  ISMTIASGAEKPISPHVVRFSQAIG--------------TDVGREYIEVVKGDLQRLFVL 120
           I M IA GAE PI P+ +RFSQAIG               D+ REYIEVVKG+LQR FVL
Sbjct: 69  IPMMIAPGAEMPIFPYAIRFSQAIGVCVQKTFFVCYLKWADIDREYIEVVKGNLQRFFVL 128

Query: 121 DFNDQAMNRFVGHHMLTTFKEFRADCPRHFKKYSDQEEARANPPNALVGRHED 160
           DFNDQA+NRFV H MLTTFKEF  DC RHFK      EARANPPN LVGRHED
Sbjct: 129 DFNDQAINRFVEHQMLTTFKEFWGDCHRHFK------EARANPPNVLVGRHED 175

[Close]

BLAST of MELO3C029062.2 vs. TrEMBL
Match: tr|A0A1S4DZJ7|A0A1S4DZJ7_CUCME (LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103493054 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.6e-29
Identity = 82/159 (51.57%), Postives = 96/159 (60.38%), Query Frame = 0


Query: 1   METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
           +ETD MFL+F  DLDN+A GSSS+  N+ SSSQ   T T +R  +SRLL+L+ +V     
Sbjct: 60  LETDVMFLKFAGDLDNLAGGSSSMDENSESSSQPSATLTPKRHTQSRLLELECYV----- 119

Query: 61  ISMTIASGAEKPISPHVVRFSQAIGTDVGREYIEVVKGDLQRLFVLDFNDQAMNRFVGHH 120
                                       GREYIEVVK DLQ  FVLDF+DQAMN  V + 
Sbjct: 120 ---------------------------TGREYIEVVKADLQ-FFVLDFSDQAMNTSVEYQ 179

Query: 121 MLTTFKEFRADCPRHFKKYSDQEEARANPPNALVGRHED 160
           M  TFKEF  DC + FKKYSD EEARANPPN LVGR+ED
Sbjct: 180 MSNTFKEFWGDCHKQFKKYSDPEEARANPPNLLVGRNED 185

[Close]

BLAST of MELO3C029062.2 vs. TrEMBL
Match: tr|A0A1S4E4T7|A0A1S4E4T7_CUCME (uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.3e-07
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 0


Query: 1   METDAMFLEFEDDLDNIAEGSSSVGNNTRSSSQQPMTPTHRRRAKSRLLDLKHHVAINAR 60
           +ETD MFLEFED LDN   GSSSVG+N  SSSQQP T T RR  +SRLL L   + +  R
Sbjct: 11  LETDTMFLEFEDQLDNFTGGSSSVGDNVGSSSQQPGTLTPRRHVQSRLLGL---LRVLTR 70

Query: 61  ISMTIASGAEKPISPHVVRFSQAIGT---DVGREYIEVVKGDLQRLFVL 107
                    + P++ H     QAI T   D+ +  I +   +L  L V+
Sbjct: 71  FDPEHTCLVDVPLTDH----RQAIFTVIKDLNKNKISLAGSELSTLKVI 112

The following BLAST results are available for this feature:

BLAST of MELO3C029062.2 vs. NCBI nr


Match Name	E-value	Identity	Description
ADN34071.1	7.4e-60	75.14	CACTA en-spm transposon protein [Cucumis melo subsp. melo]	[more]
XP_016901035.1	2.6e-49	64.74	PREDICTED: uncharacterized protein LOC107991153 [Cucumis melo] >XP_016901036.1 P...	[more]
XP_016901155.1	1.1e-28	51.57	PREDICTED: LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochond...	[more]
XP_011648549.1	1.4e-10	44.35	PREDICTED: (R)-mandelonitrile lyase 1-like [Cucumis sativus]	[more]
XP_016902990.1	1.9e-07	43.12	PREDICTED: uncharacterized protein LOC107991989 [Cucumis melo]	[more]

BLAST of MELO3C029062.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C029062.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C029062.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|E5GC72\|E5GC72_CUCME	4.9e-60	75.14	CACTA en-spm transposon protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
tr\|A0A1S4DZ93\|A0A1S4DZ93_CUCME	1.7e-49	64.74	uncharacterized protein LOC107991153 OS=Cucumis melo OX=3656 GN=LOC107991153 PE=...	[more]
tr\|A0A1S4DZJ7\|A0A1S4DZJ7_CUCME	7.6e-29	51.57	LOW QUALITY PROTEIN: gamma-aminobutyrate transaminase POP2, mitochondrial-like O...	[more]
tr\|A0A1S4E4T7\|A0A1S4E4T7_CUCME	1.3e-07	43.12	uncharacterized protein LOC107991989 OS=Cucumis melo OX=3656 GN=LOC107991989 PE=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0008483	transaminase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C029062.2.1	MELO3C029062.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..159

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C029062.2	Cucumber (Gy14) v2	cgybmedB083
MELO3C029062.2	Cucumber (Gy14) v2	cgybmedB468
MELO3C029062.2	Cucumber (Gy14) v1	cgymedB406
MELO3C029062.2	Cucumber (Gy14) v1	cgymedB150
MELO3C029062.2	Cucurbita maxima (Rimu)	cmamedB101
MELO3C029062.2	Cucurbita maxima (Rimu)	cmamedB538
MELO3C029062.2	Cucurbita maxima (Rimu)	cmamedB588
MELO3C029062.2	Cucurbita maxima (Rimu)	cmamedB643
MELO3C029062.2	Cucurbita moschata (Rifu)	cmomedB092
MELO3C029062.2	Cucurbita moschata (Rifu)	cmomedB522
MELO3C029062.2	Cucurbita moschata (Rifu)	cmomedB579
MELO3C029062.2	Cucurbita moschata (Rifu)	cmomedB631
MELO3C029062.2	Cucurbita pepo (Zucchini)	cpemedB262
MELO3C029062.2	Cucurbita pepo (Zucchini)	cpemedB319
MELO3C029062.2	Cucurbita pepo (Zucchini)	cpemedB716
MELO3C029062.2	Cucurbita pepo (Zucchini)	cpemedB816
MELO3C029062.2	Wild cucumber (PI 183967)	cpimedB096
MELO3C029062.2	Wild cucumber (PI 183967)	cpimedB526
MELO3C029062.2	Cucumber (Chinese Long) v2	cumedB096
MELO3C029062.2	Melon (DHL92) v3.6.1	medmedB041
MELO3C029062.2	Bottle gourd (USVL1VR-Ls)	lsimedB068
MELO3C029062.2	Bottle gourd (USVL1VR-Ls)	lsimedB102
MELO3C029062.2	Watermelon (Charleston Gray)	medwcgB186
MELO3C029062.2	Watermelon (Charleston Gray)	medwcgB191
MELO3C029062.2	Watermelon (97103) v1	medwmB231
MELO3C029062.2	Watermelon (97103) v1	medwmB244
MELO3C029062.2	Silver-seed gourd	carmedB0184
MELO3C029062.2	Silver-seed gourd	carmedB0330
MELO3C029062.2	Silver-seed gourd	carmedB0888
MELO3C029062.2	Cucumber (Chinese Long) v3	cucmedB099
MELO3C029062.2	Cucumber (Chinese Long) v3	cucmedB539
MELO3C029062.2	Watermelon (97103) v2	medwmbB162
MELO3C029062.2	Watermelon (97103) v2	medwmbB165
MELO3C029062.2	Wax gourd	medwgoB223
MELO3C029062.2	Wax gourd	medwgoB232