MELO3C024082.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C024082.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr01 : 8967755 .. 8967994 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGGAAACAAAAATTTTGACCGATCTGGAATGAAAGAAGCACCATCTACTGCCAATCCATCTGAGAGGCACACTAAAATTATACACTCTGACGATCCTATGTTGGAGCAAGCACAACTCGCATCCTTATCACACAATGAAGCACTACCCATTTCAAGTGAGGTTTTTGGAACAAAAGGATGGAACCCTTTCAACTTCAAGGGCAATGAGATACCCATGACGTATGAAAATATTTGA

mRNA sequence

ATGGCCGGAAACAAAAATTTTGACCGATCTGGAATGAAAGAAGCACCATCTACTGCCAATCCATCTGAGAGGCACACTAAAATTATACACTCTGACGATCCTATGTTGGAGCAAGCACAACTCGCATCCTTATCACACAATGAAGCACTACCCATTTCAAGTGAGGTTTTTGGAACAAAAGGATGGAACCCTTTCAACTTCAAGGGCAATGAGATACCCATGACGTATGAAAATATTTGA

Coding sequence (CDS)

ATGGCCGGAAACAAAAATTTTGACCGATCTGGAATGAAAGAAGCACCATCTACTGCCAATCCATCTGAGAGGCACACTAAAATTATACACTCTGACGATCCTATGTTGGAGCAAGCACAACTCGCATCCTTATCACACAATGAAGCACTACCCATTTCAAGTGAGGTTTTTGGAACAAAAGGATGGAACCCTTTCAACTTCAAGGGCAATGAGATACCCATGACGTATGAAAATATTTGA

Protein sequence

MAGNKNFDRSGMKEAPSTANPSERHTKIIHSDDPMLEQAQLASLSHNEALPISSEVFGTKGWNPFNFKGNEIPMTYENI

Homology

[Close]

BLAST of MELO3C024082.2 vs. NCBI nr
Match: KGN57782.1 (hypothetical protein Csa_3G298590 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 5.7e-05
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 1  MAGNKNFDRSGMKEAPSTANPSERHTKIIHSDDPMLEQAQLASLSHNEALPISSEVFGTK 60
          MAG K  ++S   E            +++ SD  M EQAQ    S  + LP SS++FG +
Sbjct: 1  MAGEKAVEKSEKSE-----------LEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAE 60

Query: 61 GWNPFNFKGNEIPMTYENI 80
          G+NPFNF+G EI MT EN+
Sbjct: 61 GFNPFNFQGREISMTAENL 65

[Close]

BLAST of MELO3C024082.2 vs. NCBI nr
Match: KGN49618.1 (hypothetical protein Csa_5G026440 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 9.8e-05
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 24 RHTKIIHSDDPMLEQAQLASLSHNEALPISSEVFGTKGWNPFNFKGNEIPMTYENI 80
          ++TK++  D P+ EQAQ  S    E +  SSEV  T+GWNPF F+  EI +T ENI
Sbjct: 17 KNTKVVCFDGPVSEQAQHDSTPQTETMRNSSEVLETEGWNPFKFQWMEISITDENI 72

[Close]

BLAST of MELO3C024082.2 vs. TrEMBL
Match: tr|A0A0A0LAT2|A0A0A0LAT2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-05
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 1  MAGNKNFDRSGMKEAPSTANPSERHTKIIHSDDPMLEQAQLASLSHNEALPISSEVFGTK 60
          MAG K  ++S   E            +++ SD  M EQAQ    S  + LP SS++FG +
Sbjct: 1  MAGEKAVEKSEKSE-----------LEVVRSDGRMSEQAQ---PSFVQTLPSSSDIFGAE 60

Query: 61 GWNPFNFKGNEIPMTYENI 80
          G+NPFNF+G EI MT EN+
Sbjct: 61 GFNPFNFQGREISMTAENL 65

[Close]

BLAST of MELO3C024082.2 vs. TrEMBL
Match: tr|A0A0A0KJ97|A0A0A0KJ97_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G026440 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.5e-05
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 24 RHTKIIHSDDPMLEQAQLASLSHNEALPISSEVFGTKGWNPFNFKGNEIPMTYENI 80
          ++TK++  D P+ EQAQ  S    E +  SSEV  T+GWNPF F+  EI +T ENI
Sbjct: 17 KNTKVVCFDGPVSEQAQHDSTPQTETMRNSSEVLETEGWNPFKFQWMEISITDENI 72

The following BLAST results are available for this feature:

BLAST of MELO3C024082.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57782.1	5.7e-05	41.77	hypothetical protein Csa_3G298590 [Cucumis sativus]	[more]
KGN49618.1	9.8e-05	48.21	hypothetical protein Csa_5G026440 [Cucumis sativus]	[more]

BLAST of MELO3C024082.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C024082.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C024082.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LAT2\|A0A0A0LAT2_CUCSA	3.8e-05	41.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G298590 PE=4 SV=1	[more]
tr\|A0A0A0KJ97\|A0A0A0KJ97_CUCSA	6.5e-05	48.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G026440 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C024082.2.1	MELO3C024082.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C024082.2	Cucumber (Gy14) v2	cgybmedB458
MELO3C024082.2	Cucumber (Gy14) v1	cgymedB083
MELO3C024082.2	Cucurbita maxima (Rimu)	cmamedB017
MELO3C024082.2	Cucurbita maxima (Rimu)	cmamedB456
MELO3C024082.2	Cucurbita moschata (Rifu)	cmomedB004
MELO3C024082.2	Cucurbita moschata (Rifu)	cmomedB444
MELO3C024082.2	Cucurbita pepo (Zucchini)	cpemedB597
MELO3C024082.2	Cucurbita pepo (Zucchini)	cpemedB846
MELO3C024082.2	Cucurbita pepo (Zucchini)	cpemedB848
MELO3C024082.2	Wild cucumber (PI 183967)	cpimedB514
MELO3C024082.2	Cucumber (Chinese Long) v2	cumedB503
MELO3C024082.2	Bottle gourd (USVL1VR-Ls)	lsimedB198
MELO3C024082.2	Bottle gourd (USVL1VR-Ls)	lsimedB211
MELO3C024082.2	Watermelon (97103) v1	medwmB193
MELO3C024082.2	Watermelon (Charleston Gray)	medwcgB176
MELO3C024082.2	Watermelon (Charleston Gray)	medwcgB167
MELO3C024082.2	Silver-seed gourd	carmedB0288
MELO3C024082.2	Cucumber (Chinese Long) v3	cucmedB529
MELO3C024082.2	Watermelon (97103) v2	medwmbB206
MELO3C024082.2	Watermelon (97103) v2	medwmbB216
MELO3C024082.2	Wax gourd	medwgoB253
MELO3C024082.2	Wax gourd	medwgoB259