MELO3C023749.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C023749.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr06 : 17916484 .. 17917470 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATAAGTGCCTTCTTGTGAATTGCTGAGTTTAAGTTTGATAAGGTGGCGAGGAAACCCCTAAAAAAGACAAAAAAGCTAAAGAAATGGTTATTGAAGATTAAGGTTAAGGCTCAAGGCGTTAAGGCCTTGGCTGAGGAAAAGAAAGAAAGTATGTTGAGGGAGCGAGAAGAGCTCCTTAACGAAGTGGACAAGATGGCCCTCCTCGTGAATAAGAGCAAAGGAAAAGAAAAGACTACTGATGGGTACGACAAGGAGTTCGAAAAGGAACTAGAGGAGTTCATTTCTTTGGAGGATGGGGTTGTGGAGAAACAACCAAAGAAAAAAAGAGCGTCGGAAGGTCAGGATGCCAGAAGCGAGAAAAGAAGAATAAAAAGGCTCAGCGAGAAAAGAAGAGCCAAGAAAGCGAACAAGAAGGTGTCCTTTCCATTGAGGAGTTGGGCAAACATTTTATGATTGAGAAGGGACTATTCCCAGTTAAAGGTTAGTTGCCTTCGTTTCTCGATGTCACCTATCAAGGCACTCGGATGGAAACAATTCTTCGAAGGGGTGACGACAATTAGGTCAGGCGTCATGAATCTATTCTACAATGGAAGCATCAACACAGAGAGACACTATGCCATTGTTAAAGGGAAGAAGGTAAATTTTGGGCCAAAAGCGATTAACGCATTATCTGGGCTAGCTTATATGGCGGTTGGGCACCCAATATTTGATGAACCATCAGACCGCAACATGCAAGACACGTTAGAAAGAGTTGCATGGCCAAGAACAAAATGGGACATAACGGCAATCGGGAAGTACCAACTCCTCCTACATAACTTGAAGACCGTGGTAAGGTTTGGTTGGTATTCATCAAGAAGAAGCTCATGTCCACTCGCGACAACAGTACAATTTCACTTAAAAGAATAATGCTCCTATACTGCATTGTGGAAGAGATATAAGTAAACGTGGGCGAGATAATCTACGAGCATATTGAAGTTTGGGTTCA

mRNA sequence

AGATAAGTGCCTTCTTGTGAATTGCTGAGTTTAAGTTTGATAAGGTGGCGAGGAAACCCCTAAAAAAGACAAAAAAGCTAAAGAAATGGTTATTGAAGATTAAGGTTAAGGCTCAAGGCGTTAAGGCCTTGGCTGAGGAAAAGAAAGAAAGTATGTTGAGGGAGCGAGAAGAGCTCCTTAACGAAGTGGACAAGATGGCCCTCCTCGTGAATAAGAGCAAAGGAAAAGAAAAGACTACTGATGGGTACGACAAGGAGTTCGAAAAGGAACTAGAGGAGTTCATTTCTTTGGAGGATGGGGTTGTGGAGAAACAACCAAAGAAAAAAAGAGCGTCGGAAGGTCAGGATGCCAGAAGCGAGAAAAGAAGAATAAAAAGGCTCAGCGAGAAAAGAAGAGCCAAGAAAGCGAACAAGAAGGTGTCCTTTCCATTGAGGAGTTGGGCAAACATTTTATGATTGAGAAGGGACTATTCCCAGTTAAAGGTTAGTTGCCTTCGTTTCTCGATGTCACCTATCAAGGCACTCGGATGGAAACAATTCTTCGAAGGGGTGACGACAATTAGGTCAGGCGTCATGAATCTATTCTACAATGGAAGCATCAACACAGAGAGACACTATGCCATTGTTAAAGGGAAGAAGGTAAATTTTGGGCCAAAAGCGATTAACGCATTATCTGGGCTAGCTTATATGGCGGTTGGGCACCCAATATTTGATGAACCATCAGACCGCAACATGCAAGACACGTTAGAAAGAGTTGCATGGCCAAGAACAAAATGGGACATAACGGCAATCGGGAAGTACCAACTCCTCCTACATAACTTGAAGACCGTGGTAAGGTTTGGTTGGTATTCATCAAGAAGAAGCTCATGTCCACTCGCGACAACAGTACAATTTCACTTAAAAGAATAATGCTCCTATACTGCATTGTGGAAGAGATATAAGTAAACGTGGGCGAGATAATCTACGAGCATATTGAAGTTTGGGTTCA

Coding sequence (CDS)

ATGTCACCTATCAAGGCACTCGGATGGAAACAATTCTTCGAAGGGGTGACGACAATTAGGTCAGGCGTCATGAATCTATTCTACAATGGAAGCATCAACACAGAGAGACACTATGCCATTGTTAAAGGGAAGAAGGTAAATTTTGGGCCAAAAGCGATTAACGCATTATCTGGGCTAGCTTATATGGCGGTTGGGCACCCAATATTTGATGAACCATCAGACCGCAACATGCAAGACACGTTAGAAAGAGTTGCATGGCCAAGAACAAAATGGGACATAACGGCAATCGGGAAGTACCAACTCCTCCTACATAACTTGAAGACCGTGGTAAGGTTTGGTTGGTATTCATCAAGAAGAAGCTCATGTCCACTCGCGACAACAGTACAATTTCACTTAAAAGAATAA

Protein sequence

MSPIKALGWKQFFEGVTTIRSGVMNLFYNGSINTERHYAIVKGKKVNFGPKAINALSGLAYMAVGHPIFDEPSDRNMQDTLERVAWPRTKWDITAIGKYQLLLHNLKTVVRFGWYSSRRSSCPLATTVQFHLKE

Homology

[Close]

BLAST of MELO3C023749.2 vs. NCBI nr
Match: KGN44535.1 (hypothetical protein Csa_7G327740 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 3.7e-12
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 15  GVTTIRSGVMNLFYNGSINTERHYAIVKGKKVNFGPKAINALSGLAYMAVGHPIFDEPSD 74
           GV  +R  V+NLFY   I+ E +Y +VK + V FG   INA  GL    VG  IF   + 
Sbjct: 90  GVFDMRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTP 149

Query: 75  RNMQDTLERVAWPRTKWDITAIGKYQLLLHNLKT 109
           ++M D L+ + W +T+WD     KYQL  HNL T
Sbjct: 150 KDMDDGLKTITWLKTEWDNKPTEKYQLFSHNLNT 183

[Close]

BLAST of MELO3C023749.2 vs. NCBI nr
Match: KGN54872.1 (hypothetical protein Csa_4G569710 [Cucumis sativus])

HSP 1 Score: 54.7 bits (130), Expect = 2.8e-04
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 64  VGHPIFDEPSDRNMQDTLERVAWPRTKWDITAIGKYQLLLHNLKT 109
           +GH I   P  ++++  L++V WP T  DIT  GKYQLL HNL T
Sbjct: 5   IGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNT 49

[Close]

BLAST of MELO3C023749.2 vs. TrEMBL
Match: tr|A0A0A0K4F2|A0A0A0K4F2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G327740 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.4e-12
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 15  GVTTIRSGVMNLFYNGSINTERHYAIVKGKKVNFGPKAINALSGLAYMAVGHPIFDEPSD 74
           GV  +R  V+NLFY   I+ E +Y +VK + V FG   INA  GL    VG  IF   + 
Sbjct: 90  GVFDMRVDVVNLFYKSFIHDEENYTVVKQEHVYFGLDDINAFYGLDTNEVGQVIFKNSTP 149

Query: 75  RNMQDTLERVAWPRTKWDITAIGKYQLLLHNLKT 109
           ++M D L+ + W +T+WD     KYQL  HNL T
Sbjct: 150 KDMDDGLKTITWLKTEWDNKPTEKYQLFSHNLNT 183

[Close]

BLAST of MELO3C023749.2 vs. TrEMBL
Match: tr|A0A0A0L2P0|A0A0A0L2P0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.9e-04
Identity = 22/45 (48.89%), Postives = 29/45 (64.44%), Query Frame = 0


Query: 64  VGHPIFDEPSDRNMQDTLERVAWPRTKWDITAIGKYQLLLHNLKT 109
           +GH I   P  ++++  L++V WP T  DIT  GKYQLL HNL T
Sbjct: 5   IGHDILKNPRAQDLESALKKVVWPETMLDITPTGKYQLLPHNLNT 49

The following BLAST results are available for this feature:

BLAST of MELO3C023749.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44535.1	3.7e-12	42.55	hypothetical protein Csa_7G327740 [Cucumis sativus]	[more]
KGN54872.1	2.8e-04	48.89	hypothetical protein Csa_4G569710 [Cucumis sativus]	[more]

BLAST of MELO3C023749.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C023749.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C023749.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4F2\|A0A0A0K4F2_CUCSA	2.4e-12	42.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G327740 PE=4 SV=1	[more]
tr\|A0A0A0L2P0\|A0A0A0L2P0_CUCSA	1.9e-04	48.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569710 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C023749.2.1	MELO3C023749.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C023749.2	Cucumber (Gy14) v2	cgybmedB206
MELO3C023749.2	Cucumber (Gy14) v1	cgymedB004
MELO3C023749.2	Cucurbita maxima (Rimu)	cmamedB270
MELO3C023749.2	Cucurbita maxima (Rimu)	cmamedB496
MELO3C023749.2	Cucurbita maxima (Rimu)	cmamedB497
MELO3C023749.2	Cucurbita moschata (Rifu)	cmomedB255
MELO3C023749.2	Cucurbita moschata (Rifu)	cmomedB484
MELO3C023749.2	Cucurbita pepo (Zucchini)	cpemedB628
MELO3C023749.2	Cucurbita pepo (Zucchini)	cpemedB630
MELO3C023749.2	Cucurbita pepo (Zucchini)	cpemedB690
MELO3C023749.2	Wild cucumber (PI 183967)	cpimedB229
MELO3C023749.2	Cucumber (Chinese Long) v2	cumedB228
MELO3C023749.2	Bottle gourd (USVL1VR-Ls)	lsimedB399
MELO3C023749.2	Watermelon (Charleston Gray)	medwcgB423
MELO3C023749.2	Watermelon (Charleston Gray)	medwcgB427
MELO3C023749.2	Watermelon (97103) v1	medwmB454
MELO3C023749.2	Silver-seed gourd	carmedB0490
MELO3C023749.2	Silver-seed gourd	carmedB0772
MELO3C023749.2	Cucumber (Chinese Long) v3	cucmedB235
MELO3C023749.2	Watermelon (97103) v2	medwmbB431
MELO3C023749.2	Wax gourd	medwgoB535