MELO3C016083.2 (gene) Melon (DHL92) v3.6.1

Overview
NameMELO3C016083.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionUbiquitin
Locationchr07 : 20277805 .. 20279404 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGCAGAGAGAGCATTAACGAGCGGCGCCCCAAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGACACCATCGACAATGTCAAAGCTAAGATCCAGGATAAGGAAGGTTGGGTTTCTGGTTTCTGAAGCAATATTTCTTCCTTTTCTTCTGTTTTTATCCTTTGAAATACGCATGTTTTGGATTTTTACAATTCACGGTGCATGTTTCAGGTATTCCCCCTGACCAGCAGAGACTTATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGAACGCTCGCTGACTACAATATCCAGAAAGGTTTGTACCATGCGTTTCATTGTCTTTTTTTCTTTCCCATTGAGAAAATTAAATTGGGCTAATGAAGTAAAATAAAAATAGTGTATTGTTTGTGGACGAGGTAATCTTATCTACTGGGTATGCTTTAATGGAAACTTTGAATAGGCATGGTTTAATCGTTAATGAGCGTTGTACGTTCATGTGGAAGAAACTGGATTTGAAGTTTCTCATACTATCAAGGAATGACTTCTAACGTTCAGCTATCTAGTTTTATTGAAAAAAAAACTGAACTTCTCTGGTTGCGAAACAATAAGGAATTTGAGCTTGTTCGGTGTTTTAGCTATTGAATATTAAGCAGAGGATCTTTACGAATTGATAGGTCTCTAACTGATAATCTGTGCTTACATCTTAAATTTACGGTTTAGCTTACGTGATTTTTGGGAGTTCAATCACACTCTTGAGTTTTTATTAAGTGCATTGTTCTAAGAAGTGAAATTGAATCTCATTGCTTTGTTTTTGTAATTTTTTTTTGCAGAGTCGACACTACACCTGGTGCTCAGGCTTCGTGGTGGTATTATTGAGCCGTCTTTGATGGCATTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTAAGCTTCAATAATATGCTTAATTATTTGCGTAAGAATGTTCTGAAACTGGTTGTAACAGTCTTACAATTACATTGTACACGGAGTTGGATCATGGGTGGTTAAGTTTCAGTCTCCAAACCGTCTTCCTAGACATCCTATTTTTTTAGACCCTGAATCACTGAATGCCTTGGAGAACATCTAATTTATATTGTATATGCACTTACGGATGCTTACATAGTCGTTATCTGAAGTCAATCGGGTACAATTAAATTGCAGGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGGTGAATAAATTTTTAAAATTCTGCTAAAAATGTTTTTTGCCAATACAATTTGATACTTCAAATTTGCTGCAGAACTTAGCCTTTTTTTTGTTTATCGTTTGATTTGCAGTTGAGGCCAAAGAAGAAGATCAAGTAGACCGTTGATTTTGATCAGAGAGTATGCAAAAGTCTATGCTTTGATTTATTTTCAGGATTGCTTATGCTTAGAGCCATTTGGCTTATACTCATTAGGAGTTTGAACTGTTATGTTTTTTGCTTTTTAACATTCTCGAGAAACGGCATGTTTTGTTGTTGAACTGAGTACGAAATTTTCAGCTTCTTATTTCCCA

mRNA sequence

AAAGCAGAGAGAGCATTAACGAGCGGCGCCCCAAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGACACCATCGACAATGTCAAAGCTAAGATCCAGGATAAGGAAGAGTCGACACTACACCTGGTGCTCAGGCTTCGTGGTGGTATTATTGAGCCGTCTTTGATGGCATTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAGTAGACCGTTGATTTTGATCAGAGAGTATGCAAAAGTCTATGCTTTGATTTATTTTCAGGATTGCTTATGCTTAGAGCCATTTGGCTTATACTCATTAGGAGTTTGAACTGTTATGTTTTTTGCTTTTTAACATTCTCGAGAAACGGCATGTTTTGTTGTTGAACTGAGTACGAAATTTTCAGCTTCTTATTTCCCA

Coding sequence (CDS)

ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACGATTACGTTGGAAGTTGAGTCCAGCGACACCATCGACAATGTCAAAGCTAAGATCCAGGATAAGGAAGAGTCGACACTACACCTGGTGCTCAGGCTTCGTGGTGGTATTATTGAGCCGTCTTTGATGGCATTGGCTAGGAAGTACAATCAGGACAAGATGATCTGCCGCAAGTGCTATGCCCGCCTGCACCCTCGTGCTGTCAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAGTAG

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Homology
[Close]
BLAST of MELO3C016083.2 vs. NCBI nr
Match: ONK57134.1 (uncharacterized protein A4U43_C10F16960 [Asparagus officinalis] >ONK71298.1 uncharacterized protein A4U43_C04F7030 [Asparagus officinalis])

HSP 1 Score: 194.5 bits (493), Expect = 1.7e-46
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY 60

Query: 61  NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 100
           NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct: 61  NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 99

[Close]
BLAST of MELO3C016083.2 vs. NCBI nr
Match: PNS98441.1 (hypothetical protein POPTR_016G077200v3 [Populus trichocarpa])

HSP 1 Score: 193.0 bits (489), Expect = 4.9e-46
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY 60

Query: 61  NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 100
           NQ+KMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct: 61  NQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 99

[Close]
BLAST of MELO3C016083.2 vs. NCBI nr
Match: XP_016901146.1 (PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis melo])

HSP 1 Score: 181.8 bits (460), Expect = 1.1e-42
Identity = 99/121 (81.82%), Postives = 99/121 (81.82%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE----------------------ESTL 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                      ESTL
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGWCIVLRSEIESHCFVFVIFFAESTL 60

Query: 61  HLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 100
           HLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI
Sbjct: 61  HLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 120

[Close]
BLAST of MELO3C016083.2 vs. NCBI nr
Match: KCW46606.1 (hypothetical protein EUGRSUZ_K00415 [Eucalyptus grandis])

HSP 1 Score: 181.4 bits (459), Expect = 1.5e-42
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARK+
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKF 60

Query: 61  NQDKMICR-------KCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 100
           N+DKMICR       KCYARLHPRAVNCRKKKCGHSNQLR KKKIK
Sbjct: 61  NRDKMICRKWPNLVCKCYARLHPRAVNCRKKKCGHSNQLRAKKKIK 106

[Close]
BLAST of MELO3C016083.2 vs. NCBI nr
Match: NP_001237759.1 (uncharacterized protein LOC100306626 [Glycine max] >ACU14903.1 unknown [Glycine max])

HSP 1 Score: 179.1 bits (453), Expect = 7.4e-42
Identity = 99/128 (77.34%), Postives = 99/128 (77.34%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQRRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. TAIR10
Match: AT2G36170.1 (Ubiquitin supergroup;Ribosomal protein L40e)

HSP 1 Score: 177.2 bits (448), Expect = 5.1e-45
Identity = 98/128 (76.56%), Postives = 98/128 (76.56%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. TAIR10
Match: AT3G52590.1 (ubiquitin extension protein 1)

HSP 1 Score: 177.2 bits (448), Expect = 5.1e-45
Identity = 98/128 (76.56%), Postives = 98/128 (76.56%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. TAIR10
Match: AT1G65350.1 (ubiquitin 13)

HSP 1 Score: 75.9 bits (185), Expect = 1.6e-14
Identity = 47/76 (61.84%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 49
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADNI 136

[Close]
BLAST of MELO3C016083.2 vs. TAIR10
Match: AT4G05320.2 (polyubiquitin 10)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 47/77 (61.04%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 49
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

[Close]
BLAST of MELO3C016083.2 vs. TAIR10
Match: AT4G05050.1 (ubiquitin 11)

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-14
Identity = 47/77 (61.04%), Postives = 48/77 (62.34%), Query Frame = 0 

Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 49
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

[Close]
BLAST of MELO3C016083.2 vs. Swiss-Prot
Match: sp|P49636|RL40_NICSY (Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris OX=4096 GN=UBICEP52-7 PE=2 SV=2)

HSP 1 Score: 177.9 bits (450), Expect = 5.4e-44
Identity = 98/128 (76.56%), Postives = 99/128 (77.34%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCR+KKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRRKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. Swiss-Prot
Match: sp|B9DHA6|RL40A_ARATH (Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana OX=3702 GN=RPL40A PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.2e-44
Identity = 98/128 (76.56%), Postives = 98/128 (76.56%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. Swiss-Prot
Match: sp|P0CH34|RL40A_ORYSJ (Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-1 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.2e-44
Identity = 98/128 (76.56%), Postives = 98/128 (76.56%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. Swiss-Prot
Match: sp|Q42202|RL40B_ARATH (Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana OX=3702 GN=RPL40B PE=2 SV=2)

HSP 1 Score: 177.2 bits (448), Expect = 9.2e-44
Identity = 98/128 (76.56%), Postives = 98/128 (76.56%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSLM LARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMMLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. Swiss-Prot
Match: sp|P0CH35|RL40B_ORYSJ (Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Ub-CEP52-2 PE=3 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 9.2e-44
Identity = 98/128 (76.56%), Postives = 98/128 (76.56%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSL ALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. TrEMBL
Match: tr|A0A2K1XCG6|A0A2K1XCG6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G077200v3 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.3e-46
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY 60

Query: 61  NQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 100
           NQ+KMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK
Sbjct: 61  NQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 99

[Close]
BLAST of MELO3C016083.2 vs. TrEMBL
Match: tr|A0A1S4DYS9|A0A1S4DYS9_CUCME (ubiquitin-60S ribosomal protein L40-like OS=Cucumis melo OX=3656 GN=LOC103493230 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 7.5e-43
Identity = 99/121 (81.82%), Postives = 99/121 (81.82%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE----------------------ESTL 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                      ESTL
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGWCIVLRSEIESHCFVFVIFFAESTL 60

Query: 61  HLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 100
           HLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI
Sbjct: 61  HLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKI 120

[Close]
BLAST of MELO3C016083.2 vs. TrEMBL
Match: tr|A0A058ZZ13|A0A058ZZ13_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00415 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.8e-43
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKY 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARK+
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEESTLHLVLRLRGGIIEPSLMALARKF 60

Query: 61  NQDKMICR-------KCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 100
           N+DKMICR       KCYARLHPRAVNCRKKKCGHSNQLR KKKIK
Sbjct: 61  NRDKMICRKWPNLVCKCYARLHPRAVNCRKKKCGHSNQLRAKKKIK 106

[Close]
BLAST of MELO3C016083.2 vs. TrEMBL
Match: tr|A0A1U8G8Z4|A0A1U8G8Z4_CAPAN (ubiquitin-60S ribosomal protein L40 OS=Capsicum annuum OX=4072 GN=LOC107863663 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.9e-42
Identity = 99/128 (77.34%), Postives = 99/128 (77.34%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

[Close]
BLAST of MELO3C016083.2 vs. TrEMBL
Match: tr|A0A2G5ETU7|A0A2G5ETU7_AQUCA (Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00400207v1 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.9e-42
Identity = 99/128 (77.34%), Postives = 99/128 (77.34%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-------------------------- 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE                          
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  ---ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 100
              ESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ
Sbjct: 61  IQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

The following BLAST results are available for this feature:
BLAST of MELO3C016083.2 vs. NCBI nr
Match NameE-valueIdentityDescription
ONK57134.11.7e-46100.00uncharacterized protein A4U43_C10F16960 [Asparagus officinalis] >ONK71298.1 unch... [more]
PNS98441.14.9e-4698.99hypothetical protein POPTR_016G077200v3 [Populus trichocarpa][more]
XP_016901146.11.1e-4281.82PREDICTED: ubiquitin-60S ribosomal protein L40-like [Cucumis melo][more]
KCW46606.11.5e-4290.57hypothetical protein EUGRSUZ_K00415 [Eucalyptus grandis][more]
NP_001237759.17.4e-4277.34uncharacterized protein LOC100306626 [Glycine max] >ACU14903.1 unknown [Glycine ... [more]
BLAST of MELO3C016083.2 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G36170.15.1e-4576.56Ubiquitin supergroup;Ribosomal protein L40e[more]
AT3G52590.15.1e-4576.56ubiquitin extension protein 1[more]
AT1G65350.11.6e-1461.84ubiquitin 13[more]
AT4G05320.22.1e-1461.04polyubiquitin 10[more]
AT4G05050.12.1e-1461.04ubiquitin 11[more]
BLAST of MELO3C016083.2 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P49636|RL40_NICSY5.4e-4476.56Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris OX=4096 GN=UBICEP52-... [more]
sp|B9DHA6|RL40A_ARATH9.2e-4476.56Ubiquitin-60S ribosomal protein L40-1 OS=Arabidopsis thaliana OX=3702 GN=RPL40A ... [more]
sp|P0CH34|RL40A_ORYSJ9.2e-4476.56Ubiquitin-60S ribosomal protein L40-1 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
sp|Q42202|RL40B_ARATH9.2e-4476.56Ubiquitin-60S ribosomal protein L40-2 OS=Arabidopsis thaliana OX=3702 GN=RPL40B ... [more]
sp|P0CH35|RL40B_ORYSJ9.2e-4476.56Ubiquitin-60S ribosomal protein L40-2 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
BLAST of MELO3C016083.2 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2K1XCG6|A0A2K1XCG6_POPTR3.3e-4698.99Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G077200v3 PE=... [more]
tr|A0A1S4DYS9|A0A1S4DYS9_CUCME7.5e-4381.82ubiquitin-60S ribosomal protein L40-like OS=Cucumis melo OX=3656 GN=LOC103493230... [more]
tr|A0A058ZZ13|A0A058ZZ13_EUCGR9.8e-4390.57Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00415 PE=4 SV... [more]
tr|A0A1U8G8Z4|A0A1U8G8Z4_CAPAN4.9e-4277.34ubiquitin-60S ribosomal protein L40 OS=Capsicum annuum OX=4072 GN=LOC107863663 P... [more]
tr|A0A2G5ETU7|A0A2G5ETU7_AQUCA4.9e-4277.34Uncharacterized protein OS=Aquilegia coerulea OX=218851 GN=AQUCO_00400207v1 PE=4... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR029071Ubiquitin-like_domsf
IPR038587L40e_sf
IPR000626Ubiquitin_dom
IPR001975Ribosomal_L40e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016083.2.1MELO3C016083.2.1mRNA


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001975Ribosomal protein L40eSMARTSM01377Ribosomal_L40e_3coord: 48..99
e-value: 3.6E-33
score: 126.2
IPR001975Ribosomal protein L40ePFAMPF01020Ribosomal_L40ecoord: 49..98
e-value: 5.7E-32
score: 109.2
IPR000626Ubiquitin domainSMARTSM00213ubq_7coord: 1..68
e-value: 0.0027
score: 27.0
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 3..38
e-value: 7.2E-10
score: 38.4
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..34
score: 9.983
IPR038587Ribosomal protein L40e superfamilyGENE3DG3DSA:2.20.28.70coord: 51..99
e-value: 1.1E-32
score: 113.6
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 1..50
e-value: 3.2E-18
score: 67.6
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 34..98
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..34
NoneNo IPR availablePANTHERPTHR10666:SF255UBIQUITIN-60S RIBOSOMAL PROTEIN L40coord: 1..34
coord: 34..98
IPR029071Ubiquitin-like domain superfamilySUPERFAMILYSSF54236Ubiquitin-likecoord: 1..47
IPR011332Zinc-binding ribosomal proteinSUPERFAMILYSSF57829Zn-binding ribosomal proteinscoord: 47..98

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C016083.2Cucumber (Gy14) v2cgybmedB268
MELO3C016083.2Cucumber (Gy14) v1cgymedB451
MELO3C016083.2Cucurbita moschata (Rifu)cmomedB339
MELO3C016083.2Cucurbita pepo (Zucchini)cpemedB240
MELO3C016083.2Wild cucumber (PI 183967)cpimedB303
MELO3C016083.2Cucumber (Chinese Long) v2cumedB299
MELO3C016083.2Bottle gourd (USVL1VR-Ls)lsimedB474
MELO3C016083.2Watermelon (Charleston Gray)medwcgB481
MELO3C016083.2Watermelon (97103) v1medwmB495
MELO3C016083.2Cucumber (Chinese Long) v3cucmedB309
MELO3C016083.2Watermelon (97103) v2medwmbB484
MELO3C016083.2Wax gourdmedwgoB578