MELO3C015683 (gene) Melon (DHL92) v3.5.1

NameMELO3C015683
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr2 : 4583720 .. 4584256 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGTCAACATGAAGGATGTGCAACTAACAAACCGCCACTCCTTGATGGAACCAACTATGGGTACTGGAAGGCTCGGATGATGGCCTTCTTGAAATCATTGGACCTGAATTGCTGGAGGGTTGTGATGGTTGGATGGCAACAACCTATGAAGACCAGTGAAAACGGAGTTGTTACCCAAAAAACTGAGCTAAAATGGTTAAAACCTGAAGATGAAGTTGTTGTGGGAAATTGCCAAGCCCTTAATGCACTATTCAATGCAGTAGACCCACATGTGTTTAAGTTAATCAACACATGCACGCCTGTTAAGGAAGCATGGGACATACTAGAGGTTGTTTATGAAGGTACTTCCAAGGTCAAAACCTCTCAATTACAAATTCTAATGTCCCAGATTGAGGGAATGAAGATGAGGGAAGATCAGACAATCTCAGAGTACAATGTCAAAATTCTGGACATTGCAAATGAGACATTTCTTTTAGGAGAAAGAATTCCCGAATCAAGGCTTTTAAGAAAAGTTCTGTGTTCCCTACCTTAA

mRNA sequence

ATGGAAAGTCAACATGAAGGATGTGCAACTAACAAACCGCCACTCCTTGATGGAACCAACTATGGGTACTGGAAGGCTCGGATGATGGCCTTCTTGAAATCATTGGACCTGAATTGCTGGAGGGTTGTGATGGTTGGATGGCAACAACCTATGAAGACCAGTGAAAACGGAGTTGTTACCCAAAAAACTGAGCTAAAATGGTTAAAACCTGAAGATGAAGTTGTTGTGGGAAATTGCCAAGCCCTTAATGCACTATTCAATGCAGTAGACCCACATGTGTTTAAGTTAATCAACACATGCACGCCTGTTAAGGAAGCATGGGACATACTAGAGGTTGTTTATGAAGGTACTTCCAAGGTCAAAACCTCTCAATTACAAATTCTAATGTCCCAGATTGAGGGAATGAAGATGAGGGAAGATCAGACAATCTCAGAGTACAATGTCAAAATTCTGGACATTGCAAATGAGACATTTCTTTTAGGAGAAAGAATTCCCGAATCAAGGCTTTTAAGAAAAGTTCTGTGTTCCCTACCTTAA

Coding sequence (CDS)

ATGGAAAGTCAACATGAAGGATGTGCAACTAACAAACCGCCACTCCTTGATGGAACCAACTATGGGTACTGGAAGGCTCGGATGATGGCCTTCTTGAAATCATTGGACCTGAATTGCTGGAGGGTTGTGATGGTTGGATGGCAACAACCTATGAAGACCAGTGAAAACGGAGTTGTTACCCAAAAAACTGAGCTAAAATGGTTAAAACCTGAAGATGAAGTTGTTGTGGGAAATTGCCAAGCCCTTAATGCACTATTCAATGCAGTAGACCCACATGTGTTTAAGTTAATCAACACATGCACGCCTGTTAAGGAAGCATGGGACATACTAGAGGTTGTTTATGAAGGTACTTCCAAGGTCAAAACCTCTCAATTACAAATTCTAATGTCCCAGATTGAGGGAATGAAGATGAGGGAAGATCAGACAATCTCAGAGTACAATGTCAAAATTCTGGACATTGCAAATGAGACATTTCTTTTAGGAGAAAGAATTCCCGAATCAAGGCTTTTAAGAAAAGTTCTGTGTTCCCTACCTTAA

Protein sequence

MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVTQKTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTSKVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP*
BLAST of MELO3C015683 vs. TrEMBL
Match: Q84VH8_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48
Identity = 94/180 (52.22%), Postives = 130/180 (72.22%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M  + EG   N+PP+LDG+NY YWKARM+AFLKSLD   W+ V+ GW+ P      G  T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTS 120
              K E  W K EDE+ +GN +ALNALFN VD ++F+LINTCT  K+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KVK S+LQ+L ++ E +KM+E++ I ++++ IL+IAN    LGERI + +L+RK+L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

BLAST of MELO3C015683 vs. TrEMBL
Match: Q84VI4_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.0e-48
Identity = 94/180 (52.22%), Postives = 130/180 (72.22%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M  + EG   N+PP+LDG+NY YWKARM+AFLKSLD   W+ V+ GW+ P      G  T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTS 120
              K E  W K EDE+ +GN +ALNALFN VD ++F+LINTCT  K+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KVK S+LQ+L ++ E +KM+E++ I ++++ IL+IAN    LGERI + +L+RK+L SLP
Sbjct: 121 KVKISRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

BLAST of MELO3C015683 vs. TrEMBL
Match: Q84VH6_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-48
Identity = 94/180 (52.22%), Postives = 129/180 (71.67%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M  + EG   N+PP+LDGTNY YWKARM+AFLKSLD   W+ V+ GW+ P      G  T
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTS 120
              K E  W K EDE+ +GN +ALNALFN VD ++F+LINTCT  K+AW+IL+  +EGTS
Sbjct: 61  NELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

Query: 121 KVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KVK S+LQ+L ++ E +KM+E++ I ++++ IL+IAN    LGER+ + +L+RK+L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLP 180

BLAST of MELO3C015683 vs. TrEMBL
Match: V9H042_SOYBN (Gag-protease polyprotein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.2e-47
Identity = 93/180 (51.67%), Postives = 128/180 (71.11%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M  + EG   N+PP+LDGTNY YWKARM+AFLKSLD   W+ V+  W+ P      G  T
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKDWEHPKMLDTEGKPT 60

Query: 61  Q--KTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTS 120
              K E  W K EDE+ +GN +ALNALFN VD ++F+LINTCT  K+AW+IL+  +EGTS
Sbjct: 61  DGLKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

Query: 121 KVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KVK S+LQ+L ++ E +KM+E++ I ++++ IL+IAN    LGER+ + +L+RK+L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLP 180

BLAST of MELO3C015683 vs. TrEMBL
Match: Q84VI2_SOYBN (Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 2.4e-46
Identity = 93/180 (51.67%), Postives = 128/180 (71.11%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M  + EG   N+PP+LDG+NY YWKARM+AFLKSLD   W+ V+ GW+ P      G  T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTS 120
              K E  W K EDE+ +GN +ALNALFN VD ++F+LINTCT  K+A +IL+  +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTS 120

Query: 121 KVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KVK S+LQ+L ++ E +KM+E++ I ++++ IL+IAN    LGERI + +L+RK+L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

BLAST of MELO3C015683 vs. NCBI nr
Match: gi|659100591|ref|XP_008451170.1| (PREDICTED: uncharacterized protein LOC103492548 [Cucumis melo])

HSP 1 Score: 366.3 bits (939), Expect = 3.0e-98
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT
Sbjct: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60

Query: 61  QKTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTSKV 120
           QKTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTSKV
Sbjct: 61  QKTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTSKV 120

Query: 121 KTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP
Sbjct: 121 KTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 178

BLAST of MELO3C015683 vs. NCBI nr
Match: gi|659129626|ref|XP_008464761.1| (PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 3.0e-53
Identity = 100/178 (56.18%), Postives = 135/178 (75.84%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M+   EG +T +PPLLDG NYGYWK+RM+AFL SLD+  W+ ++ GW+ P K  E G VT
Sbjct: 138 MDGIREGNSTTRPPLLDGGNYGYWKSRMIAFLMSLDMRSWKAIISGWEHPTKKDEFGKVT 197

Query: 61  QKTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTSKV 120
           +K+ELKW+  ED+  VGN +ALN LFN VD ++FKLINT    K AW+ILEV YEGTS +
Sbjct: 198 RKSELKWMSEEDDATVGNSRALNTLFNVVDQNIFKLINTYKFAKAAWEILEVAYEGTSNI 257

Query: 121 KTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           K S++QIL S  + +KM ED+TI+E+ V++L+IANE + LGE++ +S+L+RKVL SLP
Sbjct: 258 KMSRMQILTSHFKALKMEEDETIAEFIVRVLNIANELYTLGEKMSDSKLVRKVLRSLP 315

BLAST of MELO3C015683 vs. NCBI nr
Match: gi|29423270|gb|AAO73521.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-48
Identity = 94/180 (52.22%), Postives = 130/180 (72.22%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M  + EG   N+PP+LDG+NY YWKARM+AFLKSLD   W+ V+ GW+ P      G  T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTS 120
              K E  W K EDE+ +GN +ALNALFN VD ++F+LINTCT  K+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KVK S+LQ+L ++ E +KM+E++ I ++++ IL+IAN    LGERI + +L+RK+L SLP
Sbjct: 121 KVKISRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

BLAST of MELO3C015683 vs. NCBI nr
Match: gi|29423279|gb|AAO73527.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 200.3 bits (508), Expect = 2.9e-48
Identity = 94/180 (52.22%), Postives = 130/180 (72.22%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M  + EG   N+PP+LDG+NY YWKARM+AFLKSLD   W+ V+ GW+ P      G  T
Sbjct: 1   MNMEKEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTS 120
              K E  W K EDE+ +GN +ALNALFN VD ++F+LINTCT  K+AW+IL++ +EGTS
Sbjct: 61  DELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTS 120

Query: 121 KVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KVK S+LQ+L ++ E +KM+E++ I ++++ IL+IAN    LGERI + +L+RK+L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLP 180

BLAST of MELO3C015683 vs. NCBI nr
Match: gi|29423282|gb|AAO73529.1| (gag-pol polyprotein [Glycine max])

HSP 1 Score: 199.1 bits (505), Expect = 6.4e-48
Identity = 94/180 (52.22%), Postives = 129/180 (71.67%), Query Frame = 1

Query: 1   MESQHEGCATNKPPLLDGTNYGYWKARMMAFLKSLDLNCWRVVMVGWQQPMKTSENGVVT 60
           M  + EG   N+PP+LDGTNY YWKARM+AFLKSLD   W+ V+ GW+ P      G  T
Sbjct: 1   MNMEKEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPT 60

Query: 61  Q--KTELKWLKPEDEVVVGNCQALNALFNAVDPHVFKLINTCTPVKEAWDILEVVYEGTS 120
              K E  W K EDE+ +GN +ALNALFN VD ++F+LINTCT  K+AW+IL+  +EGTS
Sbjct: 61  NELKPEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTS 120

Query: 121 KVKTSQLQILMSQIEGMKMREDQTISEYNVKILDIANETFLLGERIPESRLLRKVLCSLP 179
           KVK S+LQ+L ++ E +KM+E++ I ++++ IL+IAN    LGER+ + +L+RK+L SLP
Sbjct: 121 KVKMSRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLP 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q84VH8_SOYBN2.0e-4852.22Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VI4_SOYBN2.0e-4852.22Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Q84VH6_SOYBN4.5e-4852.22Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
V9H042_SOYBN2.2e-4751.67Gag-protease polyprotein OS=Glycine max PE=2 SV=1[more]
Q84VI2_SOYBN2.4e-4651.67Gag-pol polyprotein OS=Glycine max GN=gag-pol PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659100591|ref|XP_008451170.1|3.0e-98100.00PREDICTED: uncharacterized protein LOC103492548 [Cucumis melo][more]
gi|659129626|ref|XP_008464761.1|3.0e-5356.18PREDICTED: uncharacterized protein LOC103502566 [Cucumis melo][more]
gi|29423270|gb|AAO73521.1|2.9e-4852.22gag-pol polyprotein [Glycine max][more]
gi|29423279|gb|AAO73527.1|2.9e-4852.22gag-pol polyprotein [Glycine max][more]
gi|29423282|gb|AAO73529.1|6.4e-4852.22gag-pol polyprotein [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025314DUF4219
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0044238 primary metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005488 binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015683T1MELO3C015683T1mRNA


Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025314Domain of unknown function DUF4219PFAMPF13961DUF4219coord: 16..43
score: 3.
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 12..178
score: 2.7
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 78..178
score: 2.6

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None