MELO3C015542 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C015542
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionPhotosystem II protein D1
Locationchr2 : 2671334 .. 2671958 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGACCAATGTGAGTGGATAGTTGATTGTGTATGACAGATCTTAATGTTTTGCCTAAGGAATGTAAGTTTGCATGAGTTTTCCTTCGTATGATCTTTCGAGGAATTGTTTGAGTATTTTCTTTGTGGATGCAAACAAGACTCATAAAGTTGGTTTTGGAACTATTATTAGATCTTCTATGGCATCCATTCTAGCGACTATACATGGGTCTTAAGGAGATATAATTTAGACTTGTGTGTATTTAATATAATTTTGAAGGGTGTTTATGTTTACCAAAAAGATTTGGTATCACCTTAGAATAAGTTGCTTTGGCTTAGTTTCATGATCAATTCATTAATGAGAAAAGAAGGAAGAATGATGCGATTTCACTCATTTCCGAACATTAACTCATATTCTCTAATTCACAGGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA

mRNA sequence

ATGGAGGACCAATGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA

Coding sequence (CDS)

ATGGAGGACCAATGTTACAGATTCGGTCAAGAGGAAGAAACTGAGAATATTGTAGCTGCTCATGCTTATTTCGGCCGATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAAATTTCTTCCTAGTTGCTTGGCCTGTAATAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGGCTTTAGGTCTAGGGAGGAAAGTTCAGTTGCTCCTAGGCTGA

Protein sequence

MEDQCYRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALGLGRKVQLLLG*
Homology
[Close]
BLAST of MELO3C015542 vs. Swiss-Prot
Match: PSBA_LEPTE (Photosystem II protein D1 OS=Leptosira terrestris GN=psbA PE=3 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25
Identity = 55/61 (90.16%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. Swiss-Prot
Match: PSBA_BUXMI (Photosystem II protein D1 OS=Buxus microphylla GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25
Identity = 55/61 (90.16%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. Swiss-Prot
Match: PSBA_AMAHY (Photosystem II protein D1 OS=Amaranthus hybridus GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-25
Identity = 55/61 (90.16%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. Swiss-Prot
Match: PSBA_PHAVU (Photosystem II protein D1 OS=Phaseolus vulgaris GN=psbA PE=3 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-25
Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. Swiss-Prot
Match: PSBA_EUCGG (Photosystem II protein D1 OS=Eucalyptus globulus subsp. globulus GN=psbA PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-25
Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. TrEMBL
Match: A0A0E0IVZ4_ORYNI (Photosystem II protein D1 OS=Oryza nivara PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.5e-24
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFLVAWPV+GIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLVAWPVVGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. TrEMBL
Match: Q27HM6_9ZZZZ (Photosystem II D1 (Fragment) OS=uncultured organism GN=psbA PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 2   EDQCYRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGIST 61
           ++Q Y+FGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALG+ST
Sbjct: 159 QNQGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVST 218

Query: 62  MALGL 67
           MA  L
Sbjct: 219 MAFNL 223

[Close]
BLAST of MELO3C015542 vs. TrEMBL
Match: S4TB88_9LILI (Photosystem II protein D1 OS=Najas flexilis GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. TrEMBL
Match: Q27HP0_9ZZZZ (Photosystem II D1 (Fragment) OS=uncultured organism GN=psbA PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 2   EDQCYRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGIST 61
           ++Q Y+FGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALG+ST
Sbjct: 176 QNQGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVST 235

Query: 62  MALGL 67
           MA  L
Sbjct: 236 MAFNL 240

[Close]
BLAST of MELO3C015542 vs. TrEMBL
Match: F6GPP3_NELLU (Photosystem II protein D1 OS=Nelumbo lutea GN=psbA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.1e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. TAIR10
Match: ATCG00020.1 (ATCG00020.1 photosystem II reaction center protein A)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-26
Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. NCBI nr
Match: gi|89161039|gb|ABD63018.1| (photosystem II D1 [uncultured organism])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 2   EDQCYRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGIST 61
           ++Q Y+FGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALG+ST
Sbjct: 176 QNQGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVST 235

Query: 62  MALGL 67
           MA  L
Sbjct: 236 MAFNL 240

[Close]
BLAST of MELO3C015542 vs. NCBI nr
Match: gi|937633874|gb|ALI90517.1| (PsbA, partial (chloroplast) [Sphenoclea zeylanica])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. NCBI nr
Match: gi|408901346|gb|AFU95407.1| (PsbA, partial (chloroplast) [Linum usitatissimum])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. NCBI nr
Match: gi|16119014|gb|AAL14703.1|AF420302_1 (photosystem II D1 protein [Amaranthus powellii])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 1 

Query: 6   YRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGISTMALG 65
           YRFGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPVIGIWFTALGISTMA  
Sbjct: 237 YRFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVIGIWFTALGISTMAFN 296

Query: 66  L 67
           L
Sbjct: 297 L 297

[Close]
BLAST of MELO3C015542 vs. NCBI nr
Match: gi|89161067|gb|ABD63032.1| (photosystem II D1 [uncultured organism])

HSP 1 Score: 115.9 bits (289), Expect = 3.0e-23
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1 

Query: 2   EDQCYRFGQEEETENIVAAHAYFGRLIFQYASFNNSRSLNFFLVAWPVIGIWFTALGIST 61
           ++Q Y+FGQEEET NIVAAH YFGRLIFQYASFNNSRSL+FFL AWPV+GIWFTALG+ST
Sbjct: 159 QNQGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGVST 218

Query: 62  MALGL 67
           MA  L
Sbjct: 219 MAFNL 223

The following BLAST results are available for this feature:
BLAST of MELO3C015542 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBA_LEPTE1.9e-2590.16Photosystem II protein D1 OS=Leptosira terrestris GN=psbA PE=3 SV=2[more]
PSBA_BUXMI1.9e-2590.16Photosystem II protein D1 OS=Buxus microphylla GN=psbA PE=3 SV=1[more]
PSBA_AMAHY1.9e-2590.16Photosystem II protein D1 OS=Amaranthus hybridus GN=psbA PE=3 SV=1[more]
PSBA_PHAVU2.5e-2588.52Photosystem II protein D1 OS=Phaseolus vulgaris GN=psbA PE=3 SV=2[more]
PSBA_EUCGG2.5e-2588.52Photosystem II protein D1 OS=Eucalyptus globulus subsp. globulus GN=psbA PE=3 SV... [more]
BLAST of MELO3C015542 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0E0IVZ4_ORYNI9.5e-2490.16Photosystem II protein D1 OS=Oryza nivara PE=3 SV=1[more]
Q27HM6_9ZZZZ2.1e-2381.54Photosystem II D1 (Fragment) OS=uncultured organism GN=psbA PE=2 SV=1[more]
S4TB88_9LILI2.1e-2390.16Photosystem II protein D1 OS=Najas flexilis GN=psbA PE=3 SV=1[more]
Q27HP0_9ZZZZ2.1e-2381.54Photosystem II D1 (Fragment) OS=uncultured organism GN=psbA PE=2 SV=1[more]
F6GPP3_NELLU2.1e-2390.16Photosystem II protein D1 OS=Nelumbo lutea GN=psbA PE=3 SV=1[more]
BLAST of MELO3C015542 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00020.11.4e-2688.52ATCG00020.1 photosystem II reaction center protein A[more]
BLAST of MELO3C015542 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|89161039|gb|ABD63018.1|3.0e-2381.54photosystem II D1 [uncultured organism][more]
gi|937633874|gb|ALI90517.1|3.0e-2390.16PsbA, partial (chloroplast) [Sphenoclea zeylanica][more]
gi|408901346|gb|AFU95407.1|3.0e-2390.16PsbA, partial (chloroplast) [Linum usitatissimum][more]
gi|16119014|gb|AAL14703.1|AF420302_13.0e-2390.16photosystem II D1 protein [Amaranthus powellii][more]
gi|89161067|gb|ABD63032.1|3.0e-2381.54photosystem II D1 [uncultured organism][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000484Photo_RC_L/M
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009772photosynthetic electron transport in photosystem II
Vocabulary: Molecular Function
TermDefinition
GO:0045156electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0019684 photosynthesis, light reaction
cellular_component GO:0009507 chloroplast
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015542T1MELO3C015542T1mRNA


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3DG3DSA:1.20.85.10coord: 5..66
score: 2.4
IPR000484Photosynthetic reaction centre, L/MPFAMPF00124Photo_RCcoord: 6..63
score: 9.
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 6..67
score: 3.93
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 6..66
score: 1.5
NoneNo IPR availablePANTHERPTHR33149:SF6SUBFAMILY NOT NAMEDcoord: 6..66
score: 1.5